Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3F4E BPC Identified: 54 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3F4E 1!X:112!Y G:C WC [cWW][XIX] 11.55 51.85; 40.86 10.99 -7.6 0.42 16.52
Riboswitch 3F4E 2!X:111!Y G:U Wb [cWW][XXVIII] 10.24 42.42; 71.65 29.22 -7.08 0.2 11.28
Riboswitch 3F4E 3!X:110!Y A:U WC [cWW][XX] 10.46 49.02; 59.56 10.55 -13.11 0.06 20.62
Riboswitch 3F4E 4!X:109!Y U:A Wb [---][-] 10.48 71.19; 48.32 22.88 -20.61 0.02 22.51
Riboswitch 3F4E 5!X:108!Y C:G WC [cWW][XIX] 10.16 68.73; 55.32 13.42 -9.56 0.18 13.35
Riboswitch 3F4E 6!X:107!Y U:A WC [cWW][XX] 10.58 55.35; 58.07 2.73 -7.92 0.19 14.2
Riboswitch 3F4E 7!X:106!Y U:A WC [cWW][XX] 10.89 54.09; 58.41 4.32 -5.53 0.45 20.2
Riboswitch 3F4E 8!X:105!Y C:G WC [cWW][XIX] 10.58 58.03; 51.49 6.55 -16.54 0.55 26.52
Riboswitch 3F4E 9!X:104!Y G:A S [tSH][XI] 9.55 96.71; 2.46 94.25 -94.96 2.54 45.26
Riboswitch 3F4E 11!X:31!X G:C rpS [cSS][-] 5.16 98.68; 152.7 54.02 -27.26 0.24 34.81
Riboswitch 3F4E 12!X:93!Y G:G rS [tSS][IV] 8.27 60.52; 83.02 22.5 163.31 0.04 48.0
Riboswitch 3F4E 13!X:28!X C:G pfS [cSW][-] 9.11 102.91; 54.99 47.92 -15.49 0.18 21.83
Riboswitch 3F4E 14!X:28!X A:G S [tSH][XI] 9.65 8.84; 99.87 91.03 -44.93 0.99 20.25
Riboswitch 3F4E 15!X:27!X G:C WC [cWW][XIX] 10.58 58.29; 59.97 1.68 -2.98 0.07 5.24
Riboswitch 3F4E 16!X:26!X G:C WC [cWW][XIX] 10.65 53.14; 52.28 0.86 -6.09 0.05 15.09
Riboswitch 3F4E 17!X:25!X G:C WC [cWW][XIX] 10.87 53.14; 49.9 3.24 2.23 0.89 20.94
Riboswitch 3F4E 18!X:22!X U:A rH_1 [tWH][XXIV] 9.58 37.03; 16.16 20.87 -170.3 0.22 16.14
Riboswitch 3F4E 19!X:90!Y G:A S [tSH][XI] 9.3 105.09; 9.35 95.74 -1.96 1.06 31.43
Riboswitch 3F4E 19!X:21!X G:A S(sb:O2*-N7) [---][-] 7.17 85.6; 34.2 51.4 -165.31 2.08 34.5
Riboswitch 3F4E 29!X:94!Y A:U WC [cWW][XX] 10.81 52.63; 48.52 4.12 -3.02 0.42 17.92
Riboswitch 3F4E 30!X:93!Y C:G WC [cWW][XIX] 10.53 55.95; 52.55 3.4 -17.46 0.0 19.62
Riboswitch 3F4E 31!X:84!Y C:G WC [cWW][XIX] 10.65 55.3; 48.38 6.92 -20.12 0.53 28.23
Riboswitch 3F4E 32!X:83!Y G:C WC [cWW][XIX] 10.84 51.6; 50.19 1.41 -15.51 0.04 15.23
Riboswitch 3F4E 33!X:104!Y G:A rS [tSS][-] 8.41 86.24; 60.37 25.87 170.78 0.23 8.16
Riboswitch 3F4E 33!X:46!X G:C WC [cWW][XIX] 10.68 53.58; 53.79 0.2 -7.75 0.39 15.02
Riboswitch 3F4E 34!X:105!Y U:G rS(ss:O2*-O2*)_2 [---][-] 5.58 167.26; 147.33 19.93 -131.57 0.71 25.43
Riboswitch 3F4E 34!X:45!X U:A WC [cWW][XX] 10.18 57.26; 62.8 5.54 -7.21 0.15 20.37
Riboswitch 3F4E 35!X:44!X G:C WC [cWW][XIX] 10.84 56.21; 48.33 7.88 -8.15 0.47 22.59
Riboswitch 3F4E 36!X:43!X G:C WC [cWW][XIX] 10.5 52.84; 53.69 0.85 -6.61 0.47 20.97
Riboswitch 3F4E 37!X:40!X U:A rH_1 [tWH][XXIV] 9.49 32.76; 21.91 10.86 -162.77 0.12 9.17
Riboswitch 3F4E 38!X:70!Y A:G S [tSH][XI] 9.58 4.74; 95.34 90.6 -52.76 0.92 31.79
Riboswitch 3F4E 41!X:82!Y G:C WC [cWW][XIX] 10.44 53.98; 58.68 4.7 -16.0 0.0 22.54
Riboswitch 3F4E 41!X:63!Y G:A rS [tSS][-] 8.31 86.38; 57.75 28.63 161.46 0.84 30.87
Riboswitch 3F4E 42!X:81!Y U:A WC [cWW][XX] 10.96 50.04; 54.92 4.88 -3.21 0.23 13.76
Riboswitch 3F4E 46!X:104!Y C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.9 102.82; 148.57 45.75 -53.59 0.29 20.75
Riboswitch 3F4E 49!X:60!Y A:U Wb [---][-] 10.79 38.79; 71.09 32.29 -4.65 0.05 10.74
Riboswitch 3F4E 50!X:59!Y A:U WC [cWW][XX] 10.45 56.26; 56.0 0.26 -11.78 0.5 19.83
Riboswitch 3F4E 51!X:58!Y G:C WC [cWW][XIX] 10.47 56.25; 55.07 1.17 -12.86 0.42 21.69
Riboswitch 3F4E 52!X:57!Y C:G WC [cWW][XIX] 10.19 64.63; 57.83 6.79 -11.69 0.08 16.35
Riboswitch 3F4E 62!Y:83!Y G:C rpS [cSS][-] 5.5 100.85; 150.13 49.28 -41.24 0.03 24.21
Riboswitch 3F4E 63!Y:82!Y A:C rpS(bs:O2-O2*) [cSS][-] 5.63 149.73; 110.42 39.3 -33.93 1.83 9.86
Riboswitch 3F4E 64!Y:80!Y U:A WC [cWW][XX] 9.94 57.54; 60.75 3.21 -2.12 0.01 7.46
Riboswitch 3F4E 65!Y:79!Y U:A WC [cWW][XX] 10.37 55.33; 56.6 1.27 -11.35 0.08 15.49
Riboswitch 3F4E 66!Y:78!Y U:A WC [cWW][XX] 10.41 54.78; 54.02 0.76 -7.89 0.33 16.99
Riboswitch 3F4E 67!Y:77!Y G:C WC [cWW][XIX] 10.66 56.93; 52.37 4.57 -11.09 0.17 13.11
Riboswitch 3F4E 68!Y:76!Y G:C WC [cWW][XIX] 10.78 55.82; 51.48 4.33 -4.2 0.02 14.41
Riboswitch 3F4E 69!Y:73!Y U:A rH_1 [tWH][XXIV] 10.23 35.85; 18.67 17.18 -155.86 0.04 8.7
Riboswitch 3F4E 70!Y:72!Y G:A S(sb:O2*-N7) [---][-] 7.17 81.22; 32.86 48.36 -165.19 1.15 33.84
Riboswitch 3F4E 84!Y:85!Y G:A pS(sp:O2*-O2P)_2 [---][-] 8.75 151.1; 82.65 68.45 -42.53 2.62 51.95
Riboswitch 3F4E 85!Y:98!Y A:G WC [cWW][VIII] 12.92 45.86; 48.1 2.24 -11.38 0.04 18.66
Riboswitch 3F4E 86!Y:97!Y C:G WC [cWW][XIX] 10.56 54.34; 56.78 2.44 -15.44 0.42 24.09
Riboswitch 3F4E 87!Y:96!Y A:U WC [cWW][XX] 10.42 60.23; 51.46 8.77 -20.17 0.27 24.04
Riboswitch 3F4E 88!Y:95!Y G:C WC [cWW][XIX] 10.83 57.24; 51.53 5.71 -13.31 0.39 22.94
Riboswitch 3F4E 89!Y:92!Y U:A rH_1 [tWH][XXIV] 9.35 37.12; 19.76 17.35 -148.95 0.22 16.7