| RNA | PDB | Position | bp | bpC; LG [LW][Sanger] | dCC | <X ; <Y | |<X - <Y| | Torsion | Z-Diff | Buckle |
| Riboswitch | 3F4H | 1!X:112!Y | G:C | Wb* [---][-] | 11.97 | 54.05; 36.74 | 17.31 | -7.76 | 0.39 | 22.71 |
| Riboswitch | 3F4H | 2!X:111!Y | G:U | Wb [cWW][XXVIII] | 10.3 | 45.38; 71.48 | 26.09 | -14.56 | 0.47 | 16.13 |
| Riboswitch | 3F4H | 3!X:110!Y | A:U | WC [cWW][XX] | 10.39 | 55.6; 59.53 | 3.93 | -17.42 | 0.15 | 25.11 |
| Riboswitch | 3F4H | 4!X:109!Y | U:A | WC [cWW][XX] | 9.74 | 66.62; 65.44 | 1.18 | -17.41 | 0.25 | 25.65 |
| Riboswitch | 3F4H | 5!X:108!Y | C:G | WC_Mo [cWW][XIX] | 10.37 | 70.01; 57.7 | 12.31 | -11.38 | 0.39 | 16.14 |
| Riboswitch | 3F4H | 6!X:107!Y | U:A | WC [cWW][XX] | 10.85 | 55.6; 61.88 | 6.27 | -12.66 | 0.2 | 21.61 |
| Riboswitch | 3F4H | 7!X:106!Y | U:A | WC [cWW][XX] | 10.94 | 54.66; 58.8 | 4.14 | -11.21 | 0.6 | 22.01 |
| Riboswitch | 3F4H | 8!X:105!Y | C:G | WC [cWW][XIX] | 10.51 | 61.61; 58.55 | 3.06 | -13.82 | 0.19 | 19.9 |
| Riboswitch | 3F4H | 11!X:31!X | G:C | rpS [cSS][-] | 5.4 | 98.13; 152.5 | 54.37 | -46.53 | 0.13 | 33.03 |
| Riboswitch | 3F4H | 12!X:93!Y | G:G | rS [tSS][IV] | 8.25 | 68.59; 82.72 | 14.13 | 159.49 | 0.49 | 34.86 |
| Riboswitch | 3F4H | 13!X:28!X | C:G | pfS [cSW][-] | 9.34 | 95.98; 57.45 | 38.53 | -7.52 | 0.14 | 17.66 |
| Riboswitch | 3F4H | 14!X:28!X | A:G | S [tSH][XI] | 9.71 | 10.82; 101.02 | 90.2 | -25.36 | 0.13 | 9.51 |
| Riboswitch | 3F4H | 15!X:27!X | G:C | WC [cWW][XIX] | 10.49 | 55.08; 58.54 | 3.46 | 0.39 | 0.06 | 5.72 |
| Riboswitch | 3F4H | 16!X:26!X | G:C | WC [cWW][XIX] | 10.56 | 60.22; 55.88 | 4.33 | -5.68 | 0.42 | 16.41 |
| Riboswitch | 3F4H | 17!X:25!X | G:C | WC [cWW][XIX] | 10.76 | 57.01; 51.41 | 5.61 | -1.58 | 0.79 | 18.72 |
| Riboswitch | 3F4H | 18!X:22!X | U:A | rH_1 [tWH][XXIV] | 9.74 | 35.47; 21.04 | 14.43 | -173.44 | 0.58 | 17.84 |
| Riboswitch | 3F4H | 19!X:90!Y | G:A | S [tSH][XI] | 9.36 | 99.15; 8.66 | 90.49 | -3.28 | 1.47 | 39.32 |
| Riboswitch | 3F4H | 19!X:22!X | G:A | S(bp:N1-O2P)_1 [---][-] | 8.5 | 67.53; 40.12 | 27.41 | -107.59 | 2.6 | 29.23 |
| Riboswitch | 3F4H | 19!X:21!X | G:A | S(sb:O2*-N7) [---][-] | 6.95 | 81.55; 31.99 | 49.56 | -163.7 | 1.62 | 33.38 |
| Riboswitch | 3F4H | 29!X:94!Y | A:U | WC [cWW][XX] | 10.65 | 53.84; 51.75 | 2.09 | -1.1 | 0.25 | 9.44 |
| Riboswitch | 3F4H | 30!X:93!Y | C:G | WC [cWW][XIX] | 10.56 | 56.91; 50.58 | 6.34 | -16.71 | 0.34 | 20.5 |
| Riboswitch | 3F4H | 31!X:84!Y | C:G | WC [cWW][XIX] | 10.63 | 54.92; 54.55 | 0.37 | -18.97 | 0.38 | 23.78 |
| Riboswitch | 3F4H | 32!X:83!Y | G:C | WC [cWW][XIX] | 10.9 | 52.76; 49.67 | 3.09 | -15.48 | 0.39 | 18.89 |
| Riboswitch | 3F4H | 33!X:104!Y | G:A | rS [tSS][-] | 8.3 | 84.42; 57.44 | 26.98 | 168.92 | 0.16 | 23.22 |
| Riboswitch | 3F4H | 33!X:46!X | G:C | WC [cWW][XIX] | 10.97 | 52.96; 50.77 | 2.19 | -10.93 | 0.13 | 15.5 |
| Riboswitch | 3F4H | 34!X:105!Y | U:G | rS(ss:O2*-O2*)_2 [---][-] | 5.39 | 163.28; 141.62 | 21.67 | -132.36 | 0.54 | 34.3 |
| Riboswitch | 3F4H | 34!X:45!X | U:A | WC [cWW][XX] | 10.5 | 54.8; 58.8 | 4.01 | -10.09 | 0.1 | 13.66 |
| Riboswitch | 3F4H | 35!X:44!X | G:C | WC [cWW][XIX] | 10.6 | 55.34; 55.08 | 0.25 | -13.48 | 0.03 | 17.43 |
| Riboswitch | 3F4H | 36!X:43!X | G:C | WC [cWW][XIX] | 10.75 | 54.62; 50.72 | 3.9 | -9.33 | 0.47 | 17.29 |
| Riboswitch | 3F4H | 37!X:40!X | U:A | rH_1 [tWH][XXIV] | 9.55 | 32.49; 19.48 | 13.01 | -166.88 | 0.36 | 6.79 |
| Riboswitch | 3F4H | 38!X:70!Y | A:G | S [tSH][XI] | 9.59 | 6.91; 99.76 | 92.85 | -25.83 | 0.63 | 27.23 |
| Riboswitch | 3F4H | 41!X:82!Y | G:C | WC [cWW][XIX] | 10.65 | 54.92; 53.2 | 1.73 | -16.7 | 0.01 | 22.57 |
| Riboswitch | 3F4H | 41!X:63!Y | G:A | rS [tSS][-] | 8.51 | 87.18; 56.45 | 30.73 | 161.58 | 0.9 | 31.59 |
| Riboswitch | 3F4H | 42!X:81!Y | U:A | WC [cWW][XX] | 11.04 | 47.88; 54.44 | 6.56 | 0.97 | 0.05 | 14.78 |
| Riboswitch | 3F4H | 46!X:104!Y | C:A | rpS(bs:O2-O2*) [cSS][-] | 5.83 | 97.76; 154.16 | 56.41 | -40.24 | 1.08 | 8.37 |
| Riboswitch | 3F4H | 49!X:60!Y | A:U | WC [cWW][XX] | 10.56 | 52.67; 57.46 | 4.79 | -11.43 | 0.35 | 18.19 |
| Riboswitch | 3F4H | 50!X:59!Y | A:U | WC [cWW][XX] | 10.48 | 57.96; 50.4 | 7.56 | -13.54 | 0.01 | 17.79 |
| Riboswitch | 3F4H | 51!X:58!Y | G:C | WC [cWW][XIX] | 10.46 | 53.82; 59.37 | 5.55 | -14.16 | 0.01 | 17.95 |
| Riboswitch | 3F4H | 52!X:57!Y | C:G | WC [cWW][XIX] | 10.34 | 58.34; 58.25 | 0.1 | -13.04 | 0.18 | 14.21 |
| Riboswitch | 3F4H | 62!Y:83!Y | G:C | rpS [cSS][-] | 5.18 | 107.37; 159.66 | 52.29 | -37.24 | 0.13 | 15.53 |
| Riboswitch | 3F4H | 63!Y:82!Y | A:C | rpS(bs:O2-O2*) [cSS][-] | 5.72 | 148.06; 104.92 | 43.14 | -35.42 | 1.51 | 9.04 |
| Riboswitch | 3F4H | 64!Y:80!Y | U:A | WC [cWW][XX] | 9.98 | 54.62; 61.07 | 6.45 | -1.95 | 0.26 | 11.72 |
| Riboswitch | 3F4H | 65!Y:79!Y* | U:A | WC [cWW][XX]; Wb* [---][-] | 10.46 | 50.45; 61.57 | 11.12 | -12.25 | 0.08 | 21.26 |
| Riboswitch | 3F4H | 66!Y:78!Y | U:A | WC [cWW][XX] | 10.27 | 57.02; 55.86 | 1.16 | -7.66 | 0.51 | 15.75 |
| Riboswitch | 3F4H | 67!Y:77!Y | G:C | WC [cWW][XIX] | 10.44 | 58.96; 54.59 | 4.37 | -5.82 | 0.13 | 9.23 |
| Riboswitch | 3F4H | 68!Y:76!Y | G:C | WC [cWW][XIX] | 10.88 | 53.45; 48.66 | 4.8 | -5.01 | 0.38 | 11.21 |
| Riboswitch | 3F4H | 69!Y:73!Y | U:A | rH_1 [tWH][XXIV] | 10.23 | 36.37; 14.5 | 21.87 | -154.29 | 0.02 | 12.33 |
| Riboswitch | 3F4H | 70!Y:72!Y | G:A | S(sb:O2*-N7) [---][-] | 7.05 | 81.48; 36.45 | 45.04 | -167.72 | 1.46 | 29.61 |
| Riboswitch | 3F4H | 85!Y:98!Y | A:G | WC [cWW][VIII] | 12.79 | 45.78; 49.11 | 3.33 | -9.38 | 0.12 | 15.87 |
| Riboswitch | 3F4H | 86!Y:97!Y | C:G | WC [cWW][XIX] | 10.6 | 53.79; 56.13 | 2.33 | -18.31 | 0.7 | 28.61 |
| Riboswitch | 3F4H | 87!Y:96!Y | A:U | WC [cWW][XX] | 10.35 | 56.16; 55.52 | 0.64 | -16.41 | 0.16 | 21.26 |
| Riboswitch | 3F4H | 88!Y:95!Y | G:C | WC [cWW][XIX] | 10.74 | 59.59; 45.55 | 14.04 | -16.46 | 0.26 | 29.47 |
| Riboswitch | 3F4H | 89!Y:92!Y | U:A | rH_1 [tWH][XXIV] | 9.35 | 36.59; 21.38 | 15.21 | -160.46 | 0.24 | 9.32 |