Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3FAR
BPC Identified: 20
Ambiguities: 0
vRNA |
3FAR |
1!A:23!B |
C:G |
WC [cWW][XIX] |
10.82 |
52.63; 51.18 |
1.46 |
-11.78 |
0.24 |
18.84 |
vRNA |
3FAR |
2!A:22!B |
U:A |
WC [cWW][XX] |
10.37 |
57.7; 53.66 |
4.04 |
-11.22 |
0.08 |
14.36 |
vRNA |
3FAR |
3!A:21!B |
U:A |
WC [cWW][XX] |
10.78 |
55.52; 54.5 |
1.02 |
-5.12 |
0.11 |
7.93 |
vRNA |
3FAR |
4!A:20!B |
G:C |
WC [cWW][XIX] |
10.44 |
52.51; 55.71 |
3.2 |
-9.5 |
0.1 |
10.66 |
vRNA |
3FAR |
5!A:19!B |
C:G |
WC [cWW][XIX] |
10.74 |
52.17; 50.06 |
2.11 |
-8.08 |
0.09 |
18.75 |
vRNA |
3FAR |
6!A:18!B |
U:G |
Wb [cWW][XXVIII] |
10.38 |
67.25; 42.85 |
24.39 |
-5.12 |
0.12 |
13.08 |
vRNA |
3FAR |
7!A:17!B |
G:C |
WC [cWW][XIX] |
10.29 |
55.4; 59.81 |
4.42 |
8.27 |
0.15 |
13.36 |
vRNA |
3FAR |
10!A:15!B |
G:C |
WC [cWW][XIX] |
10.57 |
52.38; 53.56 |
1.18 |
-2.07 |
0.01 |
14.43 |
vRNA |
3FAR |
11!A:14!B |
C:G |
WC [cWW][XIX] |
10.4 |
58.46; 54.93 |
3.52 |
-4.55 |
0.02 |
14.06 |
vRNA |
3FAR |
12!A:13!B |
G:C |
WC [cWW][XIX] |
10.7 |
53.13; 52.79 |
0.34 |
4.17 |
0.26 |
7.84 |
vRNA |
3FAR |
13!A:12!B |
C:G |
WC [cWW][XIX] |
10.48 |
55.41; 54.02 |
1.39 |
-4.85 |
0.08 |
12.79 |
vRNA |
3FAR |
14!A:11!B |
G:C |
WC [cWW][XIX] |
10.53 |
53.94; 55.61 |
1.68 |
-1.64 |
0.19 |
4.55 |
vRNA |
3FAR |
15!A:10!B |
C:G |
WC [cWW][XIX] |
10.23 |
56.69; 52.22 |
4.46 |
-5.48 |
0.36 |
12.52 |
vRNA |
3FAR |
17!A:7!B |
C:G |
WC [cWW][XIX] |
10.62 |
54.64; 54.94 |
0.29 |
4.66 |
0.3 |
12.25 |
vRNA |
3FAR |
18!A:6!B |
G:U |
Wb [cWW][XXVIII] |
10.31 |
43.79; 66.08 |
22.29 |
-4.84 |
0.0 |
17.56 |
vRNA |
3FAR |
19!A:5!B |
G:C |
WC [cWW][XIX] |
10.52 |
55.82; 59.51 |
3.69 |
-7.79 |
0.08 |
14.05 |
vRNA |
3FAR |
20!A:4!B |
C:G |
WC [cWW][XIX] |
10.64 |
56.86; 54.65 |
2.21 |
-6.83 |
0.08 |
8.92 |
vRNA |
3FAR |
21!A:3!B |
A:U |
WC [cWW][XX] |
10.35 |
59.35; 57.06 |
2.29 |
-8.62 |
0.02 |
10.3 |
vRNA |
3FAR |
22!A:2!B |
A:U |
WC [cWW][XX] |
10.32 |
55.66; 53.2 |
2.46 |
-12.58 |
0.04 |
14.14 |
vRNA |
3FAR |
23!A:1!B |
G:C |
WC [cWW][XIX] |
10.73 |
50.15; 50.91 |
0.76 |
-16.65 |
0.09 |
20.94 |