| RNA | PDB | Position | bp | bpC; LG [LW][Sanger] | dCC | <X ; <Y | |<X - <Y| | Torsion | Z-Diff | Buckle |
| Riboswitch | 3FO4 | 17!A:79!A | A:U | WC [cWW][XX] | 10.63 | 54.1; 54.52 | 0.42 | -12.6 | 0.42 | 23.12 |
| Riboswitch | 3FO4 | 18!A:78!A | C:G | WC [cWW][XIX] | 10.78 | 52.79; 54.88 | 2.09 | -8.7 | 0.06 | 13.69 |
| Riboswitch | 3FO4 | 19!A:77!A | A:U | WC [cWW][XX] | 10.29 | 58.61; 58.44 | 0.18 | -4.56 | 0.2 | 12.02 |
| Riboswitch | 3FO4 | 20!A:76!A | U:A | WC [cWW][XX] | 10.31 | 58.9; 57.11 | 1.79 | -9.62 | 0.28 | 15.72 |
| Riboswitch | 3FO4 | 21!A:75!A | A:U | WC [cWW][XX] | 10.48 | 59.36; 56.12 | 3.24 | -4.68 | 0.02 | 11.7 |
| Riboswitch | 3FO4 | 22!A:52!A | U:A | WC [cWW][XX] | 10.43 | 57.55; 55.21 | 2.34 | 2.18 | 0.49 | 15.3 |
| Riboswitch | 3FO4 | 23!A:46!A | A:G | fS [tSW][X] | 9.48 | 2.94; 116.98 | 114.04 | 109.97 | 0.13 | 4.76 |
| Riboswitch | 3FO4 | 24!A:53!A | A:C | rpS(ss:O2*-O2*)_1 [cSS][-] | 5.48 | 144.64; 138.81 | 5.83 | -125.06 | 1.62 | 36.12 |
| Riboswitch | 3FO4 | 25!A:45!A | U:A | WC [cWW][XX] | 10.52 | 55.33; 56.83 | 1.5 | -11.07 | 0.04 | 13.01 |
| Riboswitch | 3FO4 | 26!A:44!A | C:A | Wb* [cWW][-] | 10.75 | 48.27; 69.48 | 21.21 | -8.37 | 0.2 | 13.39 |
| Riboswitch | 3FO4 | 27!A:43!A | G:C | WC [cWW][XIX] | 10.67 | 55.05; 55.58 | 0.53 | -5.17 | 0.14 | 7.53 |
| Riboswitch | 3FO4 | 28!A:42!A | C:G | WC [cWW][XIX] | 10.69 | 53.8; 56.38 | 2.58 | -0.32 | 0.12 | 7.85 |
| Riboswitch | 3FO4 | 29!A:41!A | G:C | WC [cWW][XIX] | 10.69 | 52.63; 55.34 | 2.71 | -8.11 | 0.03 | 11.54 |
| Riboswitch | 3FO4 | 30!A:40!A | U:A | WC [cWW][XX] | 10.39 | 57.91; 56.99 | 0.91 | -4.99 | 0.18 | 9.05 |
| Riboswitch | 3FO4 | 31!A:39!A | G:C | WC [cWW][XIX] | 10.55 | 56.03; 55.65 | 0.38 | -3.57 | 0.19 | 7.51 |
| Riboswitch | 3FO4 | 33!A:66!A | A:A | rH [tWH][V] | 12.41 | 21.55; 18.68 | 2.87 | 141.29 | 0.02 | 12.12 |
| Riboswitch | 3FO4 | 33!A:37!A | A:G | rpS(sb:O2*-N3) [---][-] | 5.36 | 100.61; 157.63 | 57.03 | -12.06 | 1.85 | 15.69 |
| Riboswitch | 3FO4 | 34!A:65!A | U:A | rH_1 [tWH][XXIV] | 9.64 | 32.09; 20.74 | 11.35 | 174.7 | 0.28 | 6.41 |
| Riboswitch | 3FO4 | 34!A:37!A | U:G | rpS [cSS][-] | 4.5 | 120.25; 101.78 | 18.48 | 123.29 | 1.37 | 28.59 |
| Riboswitch | 3FO4 | 35!A:64!A | A:A | rH [tWH][V] | 12.24 | 20.11; 20.81 | 0.7 | 165.69 | 0.17 | 7.25 |
| Riboswitch | 3FO4 | 37!A:61!A | G:C | WC [cWW][XIX] | 10.83 | 50.73; 53.07 | 2.34 | -15.62 | 0.5 | 11.94 |
| Riboswitch | 3FO4 | 38!A:66!A | G:A | fS [tSW][X] | 9.35 | 118.56; 24.17 | 94.39 | -91.26 | 0.2 | 34.13 |
| Riboswitch | 3FO4 | 38!A:60!A | G:C | WC [cWW][XIX] | 10.58 | 55.9; 55.9 | 0.0 | -6.93 | 0.92 | 26.25 |
| Riboswitch | 3FO4 | 46!A:53!A | G:C | WC [cWW][XIX] | 10.7 | 53.41; 54.27 | 0.87 | -5.07 | 1.19 | 26.87 |
| Riboswitch | 3FO4 | 49!A:76!A | U:A | pfS* [cWS][-] | 6.08 | 67.61; 125.53 | 57.92 | 33.04 | 1.55 | 34.72 |
| Riboswitch | 3FO4 | 50!A:75!A | C:U | pfS [cSW][-] | 7.87 | 36.97; 131.99 | 95.02 | -28.07 | 0.73 | 22.37 |
| Riboswitch | 3FO4 | 54!A:72!A | C:G | WC [cWW][XIX] | 10.53 | 57.09; 55.81 | 1.28 | -6.97 | 0.01 | 12.96 |
| Riboswitch | 3FO4 | 55!A:71!A | G:C | WC [cWW][XIX] | 10.77 | 52.77; 53.11 | 0.34 | -11.36 | 0.02 | 10.84 |
| Riboswitch | 3FO4 | 56!A:70!A | G:C | WC [cWW][XIX] | 10.76 | 52.44; 53.95 | 1.51 | -11.7 | 0.16 | 14.73 |
| Riboswitch | 3FO4 | 57!A:69!A | G:U | Wb [cWW][XXVIII] | 10.53 | 40.18; 65.38 | 25.2 | -12.89 | 0.03 | 15.36 |
| Riboswitch | 3FO4 | 58!A:68!A | C:G | WC [cWW][XIX] | 10.64 | 54.64; 55.06 | 0.42 | -10.4 | 0.37 | 17.29 |
| Riboswitch | 3FO4 | 59!A:67!A | A:U | WC [cWW][XX] | 10.54 | 57.71; 53.99 | 3.72 | -11.95 | 0.19 | 11.26 |
| Riboswitch | 3FO4 | 61!A:65!A | C:A | pfS [cSW][-] | 9.25 | 129.8; 40.08 | 89.71 | 19.89 | 0.49 | 15.01 |
| Riboswitch | 3FO4 | 62!A:63!A | G:U | pS* [cHS][-] | 6.73 | 144.17; 50.82 | 93.35 | 5.13 | 0.53 | 5.8 |