Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3FTM
BPC Identified: 25
Ambiguities: 0
| RNA_aptamer |
3FTM |
44!A:6!B |
U:A |
WC [cWW][XX] |
10.33 |
59.04; 59.42 |
0.37 |
-16.77 |
0.15 |
16.94 |
| RNA_aptamer |
3FTM |
45!A:5!B |
G:C |
WC [cWW][XIX] |
10.58 |
56.75; 58.09 |
1.34 |
-9.26 |
0.25 |
9.52 |
| RNA_aptamer |
3FTM |
46!A:4!B |
U:A |
WC [cWW][XX] |
10.35 |
57.04; 54.35 |
2.69 |
-4.83 |
0.15 |
10.13 |
| RNA_aptamer |
3FTM |
47!A:2!B |
G:G |
S_2_mo [---][-] |
10.12 |
82.24; 16.3 |
65.93 |
-164.94 |
0.26 |
11.79 |
| RNA_aptamer |
3FTM |
48!A:4!D |
A:A |
rpS(ss:O2*-O2*) [---][-] |
6.53 |
151.27; 125.57 |
25.7 |
-84.43 |
0.29 |
55.52 |
| RNA_aptamer |
3FTM |
48!A:1!B |
A:G |
S [tSH][XI] |
8.97 |
2.41; 106.53 |
104.12 |
-33.87 |
0.92 |
25.37 |
| RNA_aptamer |
3FTM |
49!A:-1!B |
G:C |
WC [cWW][XIX] |
10.63 |
55.16; 58.5 |
3.33 |
-0.5 |
0.18 |
4.75 |
| RNA_aptamer |
3FTM |
50!A:-2!B |
G:U |
Wb [cWW][XXVIII] |
10.29 |
44.37; 68.5 |
24.13 |
-12.4 |
0.06 |
14.89 |
| RNA_aptamer |
3FTM |
51!A:-3!B |
C:G |
WC [cWW][XIX] |
10.59 |
53.72; 58.75 |
5.03 |
-8.17 |
0.07 |
15.52 |
| RNA_aptamer |
3FTM |
52!A:-4!B |
U:A |
WC [cWW][XX] |
9.99 |
57.66; 57.2 |
0.47 |
-11.64 |
0.01 |
12.17 |
| RNA_aptamer |
3FTM |
53!A:-5!B |
G:C |
WC [cWW][XIX] |
10.75 |
58.42; 49.61 |
8.81 |
-2.84 |
0.07 |
7.98 |
| RNA_aptamer |
3FTM |
2!B:5!D |
G:C |
fS_2 [---][-] |
8.66 |
36.39; 106.99 |
70.6 |
152.37 |
0.93 |
50.09 |
| RNA_aptamer |
3FTM |
2!B:46!C |
G:U |
rpS [cSS][-] |
6.47 |
99.27; 130.75 |
31.48 |
-55.81 |
1.26 |
60.5 |
| RNA_aptamer |
3FTM |
3!B:45!C |
A:G |
rpS [cSS][-] |
5.77 |
148.27; 92.14 |
56.13 |
-101.41 |
0.1 |
61.16 |
| RNA_aptamer |
3FTM |
44!C:6!D |
U:A |
WC [cWW][XX] |
10.15 |
61.59; 58.59 |
3.0 |
-6.26 |
0.17 |
7.09 |
| RNA_aptamer |
3FTM |
45!C:5!D |
G:C |
WC [cWW][XIX] |
10.5 |
52.72; 56.56 |
3.84 |
-4.84 |
0.38 |
15.41 |
| RNA_aptamer |
3FTM |
46!C:4!D |
U:A |
WC [cWW][XX] |
10.56 |
57.1; 58.55 |
1.44 |
-0.07 |
0.53 |
3.59 |
| RNA_aptamer |
3FTM |
47!C:3!D |
G:A |
S [tSH][XI] |
10.52 |
99.0; 24.86 |
74.14 |
-24.63 |
2.35 |
4.08 |
| RNA_aptamer |
3FTM |
47!C:2!D |
G:G |
S_2_mo [---][-] |
10.24 |
81.49; 15.59 |
65.9 |
-169.78 |
0.48 |
11.27 |
| RNA_aptamer |
3FTM |
48!C:1!D |
A:G |
S [tSH][XI] |
8.88 |
5.21; 105.87 |
100.67 |
-78.67 |
0.56 |
21.6 |
| RNA_aptamer |
3FTM |
49!C:-1!D |
G:C |
WC [cWW][XIX] |
10.23 |
55.64; 63.81 |
8.16 |
5.74 |
0.2 |
0.46 |
| RNA_aptamer |
3FTM |
50!C:-2!D |
G:U |
Wb [cWW][XXVIII] |
10.11 |
45.64; 72.28 |
26.64 |
-9.87 |
0.15 |
14.48 |
| RNA_aptamer |
3FTM |
51!C:-3!D |
C:G |
WC [cWW][XIX] |
10.58 |
51.01; 58.85 |
7.84 |
-6.73 |
0.03 |
10.67 |
| RNA_aptamer |
3FTM |
52!C:-4!D |
U:A |
WC [cWW][XX] |
10.14 |
56.53; 54.95 |
1.58 |
-12.77 |
0.0 |
13.69 |
| RNA_aptamer |
3FTM |
53!C:-5!D |
G:C |
WC [cWW][XIX] |
10.74 |
56.64; 52.71 |
3.93 |
-9.24 |
0.07 |
8.44 |