Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3GER BPC Identified: 36 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3GER 15!A:81!A G:C WC [cWW][XIX] 10.69 54.04; 55.06 1.02 -4.42 0.27 12.27
Riboswitch 3GER 16!A:80!A G:C WC [cWW][XIX] 10.65 54.8; 54.29 0.5 -6.03 0.25 16.91
Riboswitch 3GER 17!A:79!A A:U WC [cWW][XX] 10.51 55.59; 55.45 0.14 -11.02 0.02 14.71
Riboswitch 3GER 18!A:78!A C:G WC [cWW][XIX] 10.74 52.83; 54.49 1.66 -12.08 0.1 17.13
Riboswitch 3GER 19!A:77!A A:U WC [cWW][XX] 10.2 58.77; 59.18 0.41 -5.25 0.44 13.09
Riboswitch 3GER 20!A:76!A U:A WC [cWW][XX] 10.32 59.2; 56.49 2.71 -10.11 0.32 18.48
Riboswitch 3GER 21!A:75!A A:U WC [cWW][XX] 10.47 58.89; 55.81 3.09 -5.92 0.08 12.67
Riboswitch 3GER 22!A:52!A U:A WC [cWW][XX] 10.4 57.49; 56.11 1.39 3.4 0.61 16.8
Riboswitch 3GER 23!A:46!A A:G fS [tSW][X] 9.47 2.88; 118.9 116.02 141.91 0.2 5.79
Riboswitch 3GER 24!A:53!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.45 146.57; 138.02 8.54 -120.27 2.16 38.23
Riboswitch 3GER 25!A:45!A U:A WC [cWW][XX] 10.58 55.55; 56.27 0.72 -10.67 0.13 13.69
Riboswitch 3GER 26!A:44!A C:A Wb* [cWW][-] 10.77 48.82; 68.52 19.7 -9.43 0.0 16.23
Riboswitch 3GER 27!A:43!A G:C WC [cWW][XIX] 10.66 54.57; 55.12 0.54 -3.78 0.34 10.09
Riboswitch 3GER 28!A:42!A C:G WC [cWW][XIX] 10.65 54.71; 56.23 1.52 0.12 0.15 8.04
Riboswitch 3GER 29!A:41!A G:C WC [cWW][XIX] 10.68 53.02; 55.7 2.68 -7.67 0.05 11.65
Riboswitch 3GER 30!A:40!A U:A WC [cWW][XX] 10.34 57.73; 57.75 0.02 -4.15 0.16 6.74
Riboswitch 3GER 31!A:39!A G:C WC [cWW][XIX] 10.56 56.32; 55.87 0.45 -1.33 0.17 7.03
Riboswitch 3GER 33!A:66!A A:A rH [tWH][V] 12.3 22.6; 19.02 3.57 138.03 0.05 13.27
Riboswitch 3GER 33!A:37!A A:G rpS(sb:O2*-N3) [---][-] 5.33 101.97; 157.47 55.5 -14.09 1.91 15.72
Riboswitch 3GER 34!A:65!A U:A rH_1 [tWH][XXIV] 9.66 31.0; 21.92 9.08 174.22 0.17 6.17
Riboswitch 3GER 34!A:37!A U:G rpS [cSS][-] 4.46 120.87; 102.09 18.78 122.36 1.26 28.31
Riboswitch 3GER 35!A:64!A A:A rH [tWH][V] 12.27 20.74; 20.7 0.04 169.28 0.35 3.91
Riboswitch 3GER 37!A:61!A G:C WC [cWW][XIX] 10.82 51.68; 52.87 1.2 -14.38 0.33 11.3
Riboswitch 3GER 38!A:66!A G:A fS [tSW][X] 9.34 118.44; 24.82 93.61 -89.92 0.25 33.27
Riboswitch 3GER 38!A:60!A G:C WC [cWW][XIX] 10.55 55.88; 56.31 0.44 -5.96 0.98 25.45
Riboswitch 3GER 46!A:53!A G:C WC [cWW][XIX] 10.68 54.21; 55.3 1.08 0.36 0.83 21.91
Riboswitch 3GER 49!A:76!A U:A pfS* [cWS][-] 5.98 68.36; 124.93 56.58 32.25 1.34 33.23
Riboswitch 3GER 50!A:75!A C:U pfS [cSW][-] 7.72 38.67; 132.41 93.74 -28.82 0.65 23.04
Riboswitch 3GER 54!A:72!A C:G WC [cWW][XIX] 10.54 56.85; 55.88 0.98 -7.3 0.1 13.42
Riboswitch 3GER 55!A:71!A G:C WC [cWW][XIX] 10.79 52.69; 52.92 0.23 -11.0 0.11 10.0
Riboswitch 3GER 56!A:70!A G:C WC [cWW][XIX] 10.72 52.63; 53.96 1.33 -12.65 0.1 14.29
Riboswitch 3GER 57!A:69!A G:U Wb [cWW][XXVIII] 10.56 39.76; 65.18 25.42 -14.75 0.14 16.77
Riboswitch 3GER 58!A:68!A C:G WC [cWW][XIX] 10.6 55.03; 55.11 0.08 -10.48 0.22 14.88
Riboswitch 3GER 59!A:67!A A:U WC [cWW][XX] 10.61 56.62; 53.5 3.12 -10.43 0.18 10.63
Riboswitch 3GER 61!A:65!A C:A pfS [cSW][-] 9.15 130.33; 38.86 91.47 21.59 0.48 16.8
Riboswitch 3GER 62!A:63!A G:U pS* [cHS][-] 6.62 142.83; 51.54 91.29 7.85 0.21 9.36