Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3GLP
BPC Identified: 16
Ambiguities: 0
| mRNA |
3GLP |
1!A:8!B |
G:C |
WC [cWW][XIX] |
10.67 |
54.66; 57.73 |
3.08 |
-7.62 |
0.09 |
5.45 |
| mRNA |
3GLP |
2!A:7!B |
C:G |
WC [cWW][XIX] |
10.47 |
57.75; 54.98 |
2.77 |
-6.74 |
0.97 |
24.99 |
| mRNA |
3GLP |
3!A:6!B |
U:U |
Wb_mo [cWW][XVI] |
10.69 |
26.15; 57.95 |
31.8 |
5.98 |
0.24 |
17.02 |
| mRNA |
3GLP |
4!A:5!B |
G:C |
WC [cWW][XIX] |
11.0 |
57.56; 51.41 |
6.15 |
-1.33 |
0.29 |
7.46 |
| mRNA |
3GLP |
5!A:4!B |
C:G |
WC [cWW][XIX] |
10.57 |
58.23; 56.63 |
1.6 |
-5.0 |
0.57 |
15.78 |
| mRNA |
3GLP |
6!A:3!B |
U:U |
Wb_mo [cWW][XVI] |
10.44 |
30.01; 56.65 |
26.64 |
-1.23 |
0.33 |
18.26 |
| mRNA |
3GLP |
7!A:2!B |
G:C |
WC [cWW][XIX] |
10.77 |
50.7; 53.9 |
3.19 |
-4.63 |
0.35 |
5.96 |
| mRNA |
3GLP |
8!A:1!B |
C:G |
WC [cWW][XIX] |
10.51 |
59.23; 54.91 |
4.31 |
-0.59 |
0.26 |
6.21 |
| mRNA |
3GLP |
1!C:8!D |
G:C |
WC [cWW][XIX] |
10.55 |
56.15; 59.2 |
3.04 |
-6.03 |
0.08 |
7.35 |
| mRNA |
3GLP |
2!C:7!D |
C:G |
WC [cWW][XIX] |
10.72 |
55.58; 53.97 |
1.61 |
-11.6 |
0.06 |
12.69 |
| mRNA |
3GLP |
3!C:6!D |
U:U |
Wb_mo [cWW][XVI] |
10.85 |
56.11; 22.63 |
33.48 |
0.62 |
0.15 |
14.95 |
| mRNA |
3GLP |
4!C:5!D |
G:C |
WC [cWW][XIX] |
10.53 |
57.22; 56.02 |
1.19 |
-4.17 |
0.0 |
8.89 |
| mRNA |
3GLP |
5!C:4!D |
C:G |
WC [cWW][XIX] |
10.83 |
50.99; 52.45 |
1.46 |
-13.07 |
0.06 |
8.57 |
| mRNA |
3GLP |
6!C:3!D |
U:U |
Wb_mo [cWW][XVI] |
10.85 |
62.31; 29.45 |
32.87 |
-12.76 |
0.44 |
16.22 |
| mRNA |
3GLP |
7!C:2!D |
G:C |
WC [cWW][XIX] |
10.51 |
54.28; 58.75 |
4.47 |
-13.79 |
0.31 |
16.22 |
| mRNA |
3GLP |
8!C:1!D |
C:G |
WC [cWW][XIX] |
10.74 |
54.73; 52.88 |
1.85 |
-5.02 |
0.02 |
6.92 |