Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3GM7
BPC Identified: 18
Ambiguities: 0
mRNA |
3GM7 |
1!G:18!H |
C:G |
WC [cWW][XIX] |
11.15 |
37.67; 57.82 |
20.15 |
-7.7 |
0.07 |
21.79 |
mRNA |
3GM7 |
2!G:17!H |
U:U |
Wb_mo [cWW][XVI] |
10.3 |
34.08; 56.73 |
22.65 |
-6.16 |
0.08 |
10.1 |
mRNA |
3GM7 |
3!G:16!H |
G:C |
WC [cWW][XIX] |
10.66 |
58.57; 44.89 |
13.68 |
-5.52 |
0.19 |
6.77 |
mRNA |
3GM7 |
4!G:15!H |
C:G |
WC [cWW][XIX] |
10.44 |
55.65; 53.24 |
2.42 |
-4.78 |
0.09 |
7.51 |
mRNA |
3GM7 |
5!G:14!H |
U:U |
Wb_mo [cWW][XVI] |
10.59 |
53.82; 33.16 |
20.66 |
-4.82 |
0.39 |
15.84 |
mRNA |
3GM7 |
6!G:13!H |
G:C |
WC [cWW][XIX] |
10.5 |
55.99; 52.18 |
3.81 |
-9.28 |
0.06 |
11.36 |
mRNA |
3GM7 |
7!G:12!H |
C:G |
WC [cWW][XIX] |
10.35 |
55.63; 55.7 |
0.07 |
-7.1 |
0.16 |
8.03 |
mRNA |
3GM7 |
8!G:11!H |
U:U |
Wb_mo [cWW][XVI] |
10.27 |
32.37; 56.86 |
24.49 |
-14.52 |
0.34 |
11.71 |
mRNA |
3GM7 |
9!G:10!H |
G:C |
WC [cWW][XIX] |
10.28 |
57.57; 55.0 |
2.56 |
-8.62 |
0.13 |
10.41 |
mRNA |
3GM7 |
10!G:9!H |
C:G |
WC [cWW][XIX] |
10.31 |
57.35; 55.14 |
2.21 |
-9.25 |
0.04 |
14.55 |
mRNA |
3GM7 |
11!G:8!H |
U:U |
Wb_mo [cWW][XVI] |
10.04 |
57.78; 40.36 |
17.42 |
-3.67 |
0.29 |
13.39 |
mRNA |
3GM7 |
12!G:7!H |
G:C |
WC [cWW][XIX] |
10.52 |
52.7; 52.27 |
0.42 |
-1.91 |
0.25 |
10.61 |
mRNA |
3GM7 |
13!G:6!H |
C:G |
WC [cWW][XIX] |
10.6 |
54.64; 56.3 |
1.66 |
-2.8 |
0.01 |
2.5 |
mRNA |
3GM7 |
14!G:5!H |
U:U |
Wb_mo [cWW][XVI] |
10.55 |
55.91; 32.42 |
23.49 |
-6.56 |
0.39 |
11.2 |
mRNA |
3GM7 |
15!G:4!H |
G:C |
WC [cWW][XIX] |
10.36 |
54.54; 53.9 |
0.65 |
-7.26 |
0.11 |
10.16 |
mRNA |
3GM7 |
16!G:3!H |
C:G |
WC [cWW][XIX] |
10.69 |
56.08; 54.26 |
1.82 |
-7.96 |
0.05 |
9.71 |
mRNA |
3GM7 |
17!G:2!H |
U:U |
Wb_mo [cWW][XVI] |
10.35 |
58.25; 39.16 |
19.09 |
-8.21 |
0.13 |
16.11 |
mRNA |
3GM7 |
18!G:1!H |
G:C |
WC [cWW][XIX] |
10.46 |
54.36; 54.66 |
0.29 |
-6.41 |
0.03 |
6.67 |