Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3GOG BPC Identified: 35 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3GOG 16!A:80!A G:C WC [cWW][XIX] 10.74 53.59; 53.29 0.3 -8.7 0.13 15.95
Riboswitch 3GOG 17!A:79!A A:U WC [cWW][XX] 10.58 55.38; 55.03 0.35 -9.77 0.12 16.9
Riboswitch 3GOG 18!A:78!A C:G WC [cWW][XIX] 10.72 52.88; 55.98 3.1 -11.14 0.01 18.21
Riboswitch 3GOG 19!A:77!A A:U WC [cWW][XX] 10.27 58.1; 57.77 0.33 -8.17 0.27 10.15
Riboswitch 3GOG 20!A:76!A U:A WC [cWW][XX] 10.39 57.03; 57.0 0.03 -11.18 0.55 19.55
Riboswitch 3GOG 21!A:75!A G:C WC [cWW][XIX] 10.66 56.18; 55.28 0.9 -6.94 0.05 13.75
Riboswitch 3GOG 22!A:52!A U:A WC [cWW][XX] 10.41 58.29; 56.08 2.22 2.19 0.34 12.56
Riboswitch 3GOG 23!A:46!A A:G fS [tSW][X] 9.49 4.22; 118.03 113.81 137.13 0.26 1.99
Riboswitch 3GOG 24!A:53!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.36 147.32; 136.65 10.67 -115.47 2.58 40.63
Riboswitch 3GOG 25!A:45!A U:A WC [cWW][XX] 10.32 56.63; 57.98 1.35 -11.71 0.31 16.31
Riboswitch 3GOG 26!A:44!A C:A Wb* [cWW][-] 10.67 49.75; 68.92 19.17 -7.57 0.02 13.98
Riboswitch 3GOG 27!A:43!A G:C WC [cWW][XIX] 10.62 55.83; 54.63 1.2 -7.65 0.22 11.24
Riboswitch 3GOG 28!A:42!A C:G WC [cWW][XIX] 10.6 55.89; 55.6 0.29 -0.44 0.07 9.86
Riboswitch 3GOG 29!A:41!A G:C WC [cWW][XIX] 10.64 53.54; 56.31 2.77 -9.02 0.11 12.09
Riboswitch 3GOG 30!A:40!A U:A WC [cWW][XX] 10.4 56.52; 57.22 0.7 -2.12 0.07 5.62
Riboswitch 3GOG 31!A:39!A G:C WC [cWW][XIX] 10.59 55.24; 55.24 0.0 -1.24 0.22 7.29
Riboswitch 3GOG 33!A:66!A A:A rH [tWH][V] 12.28 20.5; 18.92 1.58 139.12 0.06 10.2
Riboswitch 3GOG 33!A:37!A A:G rpS(sb:O2*-N3) [---][-] 5.27 100.8; 158.83 58.04 -14.26 1.77 13.64
Riboswitch 3GOG 34!A:65!A U:A rH_1 [tWH][XXIV] 9.67 32.5; 20.12 12.38 171.93 0.29 5.32
Riboswitch 3GOG 34!A:37!A U:G rpS [cSS][-] 4.36 120.32; 102.94 17.38 125.32 1.38 27.48
Riboswitch 3GOG 35!A:64!A A:A rH [tWH][V] 12.23 19.96; 21.53 1.58 178.85 0.26 6.08
Riboswitch 3GOG 37!A:61!A G:C WC [cWW][XIX] 10.68 52.3; 53.99 1.69 -13.79 0.45 10.51
Riboswitch 3GOG 38!A:66!A G:A fS [tSW][X] 9.42 118.58; 24.54 94.04 -89.7 0.39 31.36
Riboswitch 3GOG 38!A:60!A G:C WC [cWW][XIX] 10.51 55.69; 57.35 1.65 -6.67 0.74 24.56
Riboswitch 3GOG 46!A:53!A G:C WC [cWW][XIX] 10.71 53.0; 54.44 1.44 4.32 0.76 17.07
Riboswitch 3GOG 49!A:76!A U:A pfS* [cWS][-] 5.92 69.25; 125.9 56.65 33.23 1.15 32.21
Riboswitch 3GOG 50!A:75!A C:C pfS [cSW][-] 8.1 35.22; 131.75 96.53 -27.98 0.66 23.33
Riboswitch 3GOG 54!A:72!A C:G WC [cWW][XIX] 10.5 57.41; 54.81 2.59 -9.84 0.07 15.4
Riboswitch 3GOG 55!A:71!A G:C WC [cWW][XIX] 10.78 52.68; 52.37 0.31 -11.64 0.04 11.47
Riboswitch 3GOG 56!A:70!A G:C WC [cWW][XIX] 10.81 51.89; 52.83 0.94 -11.0 0.04 12.92
Riboswitch 3GOG 57!A:69!A G:U Wb [cWW][XXVIII] 10.4 39.76; 65.44 25.68 -12.88 0.01 13.13
Riboswitch 3GOG 58!A:68!A C:G WC [cWW][XIX] 10.64 53.71; 55.18 1.47 -9.82 0.0 14.75
Riboswitch 3GOG 59!A:67!A A:U WC [cWW][XX] 10.58 57.61; 54.49 3.12 -7.63 0.14 9.59
Riboswitch 3GOG 61!A:65!A C:A pfS [cSW][-] 9.2 131.12; 40.06 91.06 22.11 0.26 16.75
Riboswitch 3GOG 62!A:63!A G:U pS* [cHS][-] 6.72 144.16; 49.7 94.46 10.37 0.28 9.0