Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3GOT BPC Identified: 34 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3GOT 16!A:80!A G:C WC [cWW][XIX] 10.62 55.64; 54.1 1.54 -10.98 0.11 15.39
Riboswitch 3GOT 17!A:79!A A:U WC [cWW][XX] 10.24 56.68; 56.8 0.12 -12.6 0.06 21.42
Riboswitch 3GOT 18!A:78!A C:G WC [cWW][XIX] 10.59 52.09; 56.61 4.53 -14.3 0.13 17.03
Riboswitch 3GOT 19!A:77!A A:U WC [cWW][XX] 10.42 57.57; 58.99 1.42 -7.42 0.33 11.3
Riboswitch 3GOT 20!A:76!A U:A WC [cWW][XX] 10.3 59.95; 54.13 5.82 -13.91 0.36 21.35
Riboswitch 3GOT 21!A:75!A A:U WC [cWW][XX] 10.44 57.72; 55.13 2.58 -5.55 0.01 12.02
Riboswitch 3GOT 22!A:52!A U:A WC [cWW][XX] 10.46 56.38; 54.95 1.43 3.03 0.72 17.37
Riboswitch 3GOT 23!A:46!A A:G fS [tSW][X] 9.41 2.75; 117.59 114.84 134.84 0.2 4.42
Riboswitch 3GOT 24!A:53!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.55 145.15; 136.92 8.24 -123.27 2.14 37.47
Riboswitch 3GOT 25!A:45!A U:A WC [cWW][XX] 10.49 54.49; 58.24 3.75 -13.59 0.12 13.52
Riboswitch 3GOT 27!A:43!A G:C WC [cWW][XIX] 10.53 57.98; 57.1 0.88 -8.53 0.01 9.45
Riboswitch 3GOT 28!A:42!A C:G WC [cWW][XIX] 10.63 54.42; 55.48 1.06 -0.95 0.32 13.9
Riboswitch 3GOT 29!A:41!A G:C WC [cWW][XIX] 10.7 52.4; 56.54 4.14 -6.49 0.01 10.9
Riboswitch 3GOT 30!A:40!A U:A WC [cWW][XX] 10.34 58.45; 57.7 0.75 -4.76 0.3 8.41
Riboswitch 3GOT 31!A:39!A G:C WC [cWW][XIX] 10.47 55.42; 56.12 0.7 -3.53 0.22 9.28
Riboswitch 3GOT 33!A:66!A A:A rH [tWH][V] 12.33 21.95; 17.32 4.62 130.59 0.33 12.47
Riboswitch 3GOT 33!A:37!A A:G rpS(sb:O2*-N3) [---][-] 5.31 100.82; 156.21 55.39 -18.31 1.87 13.41
Riboswitch 3GOT 34!A:65!A U:A rH_1 [tWH][XXIV] 9.62 30.36; 19.79 10.57 168.39 0.1 9.6
Riboswitch 3GOT 34!A:37!A U:G rpS [cSS][-] 4.33 123.66; 101.13 22.53 121.49 1.31 26.65
Riboswitch 3GOT 35!A:64!A A:A rH [tWH][V] 12.29 21.4; 23.02 1.62 171.21 0.25 7.95
Riboswitch 3GOT 37!A:61!A G:C WC [cWW][XIX] 10.77 50.11; 53.66 3.54 -17.32 0.45 11.3
Riboswitch 3GOT 38!A:66!A G:A fS [tSW][X] 9.34 118.7; 26.57 92.13 -93.45 0.18 33.94
Riboswitch 3GOT 38!A:60!A G:C WC [cWW][XIX] 10.51 56.26; 56.88 0.62 -7.4 0.73 25.93
Riboswitch 3GOT 46!A:53!A G:C WC [cWW][XIX] 10.73 53.27; 54.97 1.69 0.02 1.02 22.87
Riboswitch 3GOT 49!A:76!A U:A pfS* [cWS][-] 5.94 68.41; 125.56 57.15 23.86 1.22 30.4
Riboswitch 3GOT 50!A:75!A C:U pfS [cSW][-] 7.61 36.01; 131.51 95.5 -26.0 0.27 20.52
Riboswitch 3GOT 54!A:72!A C:G WC [cWW][XIX] 10.39 57.15; 54.66 2.49 -8.66 0.15 16.21
Riboswitch 3GOT 55!A:71!A G:C WC [cWW][XIX] 10.77 53.44; 54.16 0.72 -12.35 0.02 10.71
Riboswitch 3GOT 56!A:70!A G:C WC [cWW][XIX] 10.76 53.74; 53.27 0.47 -12.76 0.19 13.12
Riboswitch 3GOT 57!A:69!A G:U Wb [cWW][XXVIII] 10.47 40.31; 63.84 23.53 -15.53 0.05 16.31
Riboswitch 3GOT 58!A:68!A C:G WC [cWW][XIX] 10.52 54.01; 54.99 0.98 -11.88 0.29 17.43
Riboswitch 3GOT 59!A:67!A A:U WC [cWW][XX] 10.48 57.58; 54.68 2.9 -13.49 0.04 10.11
Riboswitch 3GOT 61!A:65!A C:A pfS [cSW][-] 9.19 130.5; 40.48 90.02 19.45 0.16 12.78
Riboswitch 3GOT 62!A:63!A G:U pS* [cHS][-] 6.67 140.89; 54.68 86.21 11.01 0.35 8.34