Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3GS1
BPC Identified: 31
Ambiguities: 0
| HP_Ribozyme |
3GS1 |
-4!A:13!B |
C:G |
WC [cWW][XIX] |
10.45 |
59.26; 55.98 |
3.29 |
-8.4 |
0.35 |
19.38 |
| HP_Ribozyme |
3GS1 |
-3!A:12!B |
C:G |
WC [cWW][XIX] |
10.57 |
55.79; 52.93 |
2.86 |
-2.79 |
0.14 |
4.42 |
| HP_Ribozyme |
3GS1 |
-2!A:11!B |
C:G |
WC [cWW][XIX] |
10.48 |
59.61; 56.12 |
3.49 |
0.04 |
0.18 |
1.71 |
| HP_Ribozyme |
3GS1 |
-1!A:9!B |
A:A |
S [tSH][-] |
10.09 |
81.15; 3.49 |
77.66 |
151.94 |
0.26 |
17.6 |
| HP_Ribozyme |
3GS1 |
1!A:25!C |
G:C |
WC [cWW][XIX] |
10.48 |
53.41; 56.11 |
2.7 |
-10.68 |
0.76 |
20.14 |
| HP_Ribozyme |
3GS1 |
2!A:8!B |
U:G |
S*_1 [tHS][-] |
11.22 |
13.98; 98.62 |
84.63 |
39.72 |
1.24 |
21.24 |
| HP_Ribozyme |
3GS1 |
3!A:7!B |
C:A |
Wb* [cWW][-] |
11.3 |
44.14; 67.75 |
23.61 |
2.59 |
0.19 |
37.02 |
| HP_Ribozyme |
3GS1 |
4!A:6!B |
C:G |
WC [cWW][XIX] |
10.74 |
55.37; 58.83 |
3.45 |
-3.97 |
0.16 |
14.32 |
| HP_Ribozyme |
3GS1 |
5!A:5!B |
A:U |
WC [cWW][XX] |
11.01 |
55.36; 50.53 |
4.83 |
-7.23 |
0.18 |
10.6 |
| HP_Ribozyme |
3GS1 |
6!A:4!B |
C:G |
WC [cWW][XIX] |
10.65 |
60.27; 59.89 |
0.38 |
0.11 |
0.36 |
9.67 |
| HP_Ribozyme |
3GS1 |
7!A:3!B |
C:G |
WC [cWW][XIX] |
10.34 |
61.49; 55.05 |
6.43 |
-12.1 |
0.25 |
12.2 |
| HP_Ribozyme |
3GS1 |
8!A:2!B |
G:C |
WC [cWW][XIX] |
10.69 |
60.22; 55.78 |
4.44 |
-2.96 |
0.0 |
6.24 |
| HP_Ribozyme |
3GS1 |
10!B:25!C |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.45 |
94.63; 153.95 |
59.33 |
-69.7 |
0.13 |
45.24 |
| HP_Ribozyme |
3GS1 |
11!B:24!C |
G:A |
rpS(sb:O2*-N3) [---][-] |
5.38 |
153.97; 101.6 |
52.37 |
-77.3 |
1.71 |
46.0 |
| HP_Ribozyme |
3GS1 |
15!C:49!D |
G:C |
WC [cWW][XIX] |
10.75 |
53.28; 56.31 |
3.03 |
-6.46 |
0.38 |
5.17 |
| HP_Ribozyme |
3GS1 |
16!C:48!D |
G:C |
WC [cWW][XIX] |
10.68 |
52.43; 64.74 |
12.31 |
-16.26 |
0.02 |
10.05 |
| HP_Ribozyme |
3GS1 |
17!C:47!D |
C:G |
WC [cWW][XIX] |
10.73 |
54.74; 57.79 |
3.05 |
-7.67 |
0.3 |
15.37 |
| HP_Ribozyme |
3GS1 |
18!C:46!D |
A:U |
WC [cWW][XX] |
10.46 |
57.33; 58.84 |
1.51 |
-4.87 |
0.07 |
9.74 |
| HP_Ribozyme |
3GS1 |
19!C:45!D |
G:C |
WC [cWW][XIX] |
10.38 |
55.93; 60.03 |
4.11 |
0.08 |
0.05 |
3.59 |
| HP_Ribozyme |
3GS1 |
20!C:44!D |
A:C |
Wb* [cWW][-] |
10.43 |
74.67; 49.56 |
25.12 |
0.56 |
0.14 |
12.44 |
| HP_Ribozyme |
3GS1 |
21!C:43!D |
G:A |
S [tSH][XI] |
9.6 |
97.14; 4.31 |
92.83 |
70.56 |
0.01 |
8.16 |
| HP_Ribozyme |
3GS1 |
22!C:41!D |
A:U |
rH_1 [tWH][XXIV] |
9.76 |
18.58; 32.91 |
14.32 |
-164.02 |
0.35 |
12.14 |
| HP_Ribozyme |
3GS1 |
23!C:40!D |
A:A |
rH_Mo [tWH][V] |
12.88 |
12.06; 30.54 |
18.47 |
-166.54 |
0.58 |
16.11 |
| HP_Ribozyme |
3GS1 |
24!C:38!D |
A:A |
rH [tWH][V] |
12.1 |
12.37; 33.08 |
20.71 |
-179.21 |
0.55 |
15.92 |
| HP_Ribozyme |
3GS1 |
26!C:36!D |
A:G |
WC [cWW][VIII] |
12.62 |
46.89; 47.09 |
0.2 |
-11.94 |
0.0 |
16.78 |
| HP_Ribozyme |
3GS1 |
27!C:36!D |
C:G |
WC_Mo [cWW][XIX] |
10.16 |
72.76; 61.42 |
11.34 |
-22.48 |
2.32 |
11.54 |
| HP_Ribozyme |
3GS1 |
27!C:35!D |
C:G |
WC [cWW][XIX] |
10.68 |
51.39; 52.92 |
1.53 |
-16.66 |
0.24 |
18.86 |
| HP_Ribozyme |
3GS1 |
28!C:34!D |
A:U |
WC [cWW][XX] |
10.58 |
53.14; 52.65 |
0.49 |
-14.0 |
0.12 |
15.96 |
| HP_Ribozyme |
3GS1 |
29!C:33!D |
C:G |
WC [cWW][XIX] |
10.62 |
56.48; 54.92 |
1.56 |
-6.04 |
0.28 |
9.75 |
| HP_Ribozyme |
3GS1 |
30!C:32!D |
G:C |
WC [cWW][XIX] |
10.77 |
53.68; 53.58 |
0.1 |
-10.03 |
0.1 |
13.3 |
| HP_Ribozyme |
3GS1 |
31!C:31!D |
A:U |
WC [cWW][XX] |
10.56 |
61.18; 52.23 |
8.94 |
1.17 |
0.08 |
6.3 |