Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3GS5 BPC Identified: 29 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3GS5 2!A:25!A C:G WC [cWW][XIX] 10.43 58.89; 57.95 0.94 -11.03 0.02 19.41
HP_ribozyme 3GS5 3!A:24!A C:G WC [cWW][XIX] 10.49 56.99; 55.54 1.45 -6.88 0.17 8.43
HP_ribozyme 3GS5 4!A:23!A C:G WC [cWW][XIX] 10.36 61.47; 55.41 6.06 0.55 0.32 6.06
HP_ribozyme 3GS5 5!A:21!A A:A S [tSH][-] 9.88 84.36; 5.76 78.6 -96.42 0.19 16.01
HP_ribozyme 3GS5 6!A:37!C G:C WC [cWW][XIX] 10.44 52.02; 55.54 3.52 -14.73 0.57 22.25
HP_ribozyme 3GS5 8!A:19!A C:A Wb* [cWW][-] 11.13 43.86; 70.05 26.19 -4.41 0.06 28.97
HP_ribozyme 3GS5 9!A:18!A C:G WC [cWW][XIX] 10.56 57.48; 60.74 3.26 -6.76 0.26 12.41
HP_ribozyme 3GS5 10!A:17!A A:U WC [cWW][XX] 10.59 54.78; 52.88 1.9 -9.3 0.34 14.97
HP_ribozyme 3GS5 11!A:16!A C:G WC [cWW][XIX] 10.56 57.69; 57.57 0.11 -6.89 0.26 13.26
HP_ribozyme 3GS5 12!A:15!A C:G WC [cWW][XIX] 10.14 61.14; 58.32 2.82 -13.77 0.25 15.65
HP_ribozyme 3GS5 13!A:14!A G:C WC [cWW][XIX] 10.44 58.51; 60.33 1.82 -9.1 0.01 10.62
HP_ribozyme 3GS5 22!A:37!C A:C rpS(sb:O2*-N3) [cSS][-] 5.55 96.79; 152.2 55.41 -80.16 0.5 50.63
HP_ribozyme 3GS5 23!A:36!C G:A rpS(sb:O2*-N3) [---][-] 5.48 150.63; 97.54 53.08 -81.82 1.7 49.0
HP_ribozyme 3GS5 27!C:62!C G:C WC [cWW][XIX] 10.55 52.66; 56.69 4.03 -11.69 0.53 9.78
HP_ribozyme 3GS5 28!C:61!C G:C WC [cWW][XIX] 10.56 51.26; 59.54 8.28 -11.59 0.06 15.37
HP_ribozyme 3GS5 29!C:60!C C:G WC [cWW][XIX] 10.64 55.22; 57.9 2.67 -9.65 0.4 16.66
HP_ribozyme 3GS5 30!C:59!C A:U WC [cWW][XX] 10.26 59.7; 60.26 0.56 -6.16 0.02 11.63
HP_ribozyme 3GS5 31!C:58!C G:C WC [cWW][XIX] 10.18 56.41; 59.99 3.58 0.69 0.03 10.29
HP_ribozyme 3GS5 32!C:57!C A:C Wb* [cWW][-] 10.16 76.56; 50.65 25.91 -1.06 0.32 16.32
HP_ribozyme 3GS5 33!C:56!C G:A S [tSH][XI] 9.48 98.58; 3.66 94.92 39.43 0.15 7.51
HP_ribozyme 3GS5 34!C:54!C A:U rH_1 [tWH][XXIV] 9.61 19.72; 33.65 13.92 -164.7 0.35 12.35
HP_ribozyme 3GS5 35!C:53!C A:A rH_Mo [tWH][V] 12.53 11.77; 33.13 21.35 -167.39 0.36 14.37
HP_ribozyme 3GS5 36!C:51!C A:A rH_mo [tWH][V] 12.01 8.75; 38.02 29.27 179.09 0.62 16.09
HP_ribozyme 3GS5 38!C:49!C A:G WC [cWW][VIII] 12.5 48.8; 46.88 1.92 -12.23 0.02 22.36
HP_ribozyme 3GS5 39!C:48!C C:G WC [cWW][XIX] 10.5 55.83; 54.69 1.14 -17.84 0.33 23.17
HP_ribozyme 3GS5 40!C:47!C A:U WC [cWW][XX] 10.35 55.33; 56.88 1.55 -17.39 0.04 19.92
HP_ribozyme 3GS5 41!C:46!C C:G WC [cWW][XIX] 10.49 56.92; 56.05 0.87 -11.0 0.36 14.93
HP_ribozyme 3GS5 42!C:45!C G:C WC [cWW][XIX] 10.65 53.71; 54.22 0.51 -12.08 0.13 15.19
HP_ribozyme 3GS5 43!C:44!C A:U WC [cWW][XX] 10.4 62.14; 53.32 8.82 -2.1 0.04 5.83