Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3GS8 BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_Ribozyme 3GS8 2!A:13!B C:G WC [cWW][XIX] 10.49 57.73; 57.39 0.35 -13.47 0.0 21.37
HP_Ribozyme 3GS8 3!A:12!B C:G WC [cWW][XIX] 10.65 54.41; 54.82 0.4 -5.96 0.05 8.31
HP_Ribozyme 3GS8 4!A:11!B C:G WC [cWW][XIX] 10.46 61.59; 55.38 6.21 -0.42 0.07 2.51
HP_Ribozyme 3GS8 5!A:9!B A:A S [tSH][-] 10.53 78.14; 3.88 74.26 -93.93 0.14 9.56
HP_Ribozyme 3GS8 6!A:25!C G:C WC [cWW][XIX] 10.49 53.37; 56.31 2.94 -12.94 0.52 18.83
HP_Ribozyme 3GS8 7!A:8!B U:G S*_1 [tHS][-] 11.35 5.75; 90.47 84.73 65.2 0.64 15.52
HP_Ribozyme 3GS8 8!A:7!B C:A Wb* [cWW][-] 10.98 45.86; 70.14 24.28 -2.17 0.03 24.86
HP_Ribozyme 3GS8 9!A:6!B C:G WC [cWW][XIX] 10.57 58.44; 61.17 2.73 -2.82 0.31 22.71
HP_Ribozyme 3GS8 10!A:5!B A:U WC [cWW][XX] 11.07 55.12; 50.04 5.08 -6.68 0.13 8.57
HP_Ribozyme 3GS8 11!A:4!B C:G WC [cWW][XIX] 10.64 61.89; 55.3 6.59 -10.23 0.16 13.16
HP_Ribozyme 3GS8 12!A:3!B C:G WC [cWW][XIX] 10.37 55.25; 52.85 2.4 -11.51 0.33 11.84
HP_Ribozyme 3GS8 13!A:2!B G:C WC [cWW][XIX] 10.7 59.76; 60.63 0.87 -12.83 0.2 16.29
HP_Ribozyme 3GS8 10!B:25!C A:C rpS(sb:O2*-N3) [cSS][-] 5.44 96.24; 151.67 55.43 -66.56 1.01 46.61
HP_Ribozyme 3GS8 11!B:24!C G:A rpS(sb:O2*-N3) [---][-] 5.46 151.97; 97.76 54.21 -82.96 1.44 46.1
HP_Ribozyme 3GS8 15!C:49!D G:C WC [cWW][XIX] 10.76 54.31; 56.21 1.9 -3.57 0.56 5.7
HP_Ribozyme 3GS8 16!C:48!D G:C WC [cWW][XIX] 10.91 51.0; 54.13 3.13 -8.73 0.26 14.03
HP_Ribozyme 3GS8 17!C:47!D C:G WC [cWW][XIX] 10.48 56.73; 57.77 1.04 -5.08 0.25 15.95
HP_Ribozyme 3GS8 18!C:46!D A:U WC [cWW][XX] 10.25 59.34; 58.29 1.05 -4.35 0.17 8.31
HP_Ribozyme 3GS8 19!C:45!D G:C WC [cWW][XIX] 10.32 57.1; 59.55 2.45 1.95 0.01 8.86
HP_Ribozyme 3GS8 20!C:44!D A:C Wb* [cWW][-] 10.28 78.31; 50.28 28.03 -0.09 0.1 10.76
HP_Ribozyme 3GS8 21!C:43!D G:A S [tSH][XI] 9.49 95.2; 2.77 92.43 49.23 0.04 8.4
HP_Ribozyme 3GS8 22!C:41!D A:U rH_1 [tWH][XXIV] 9.72 18.54; 32.63 14.09 -166.85 0.45 11.2
HP_Ribozyme 3GS8 23!C:40!D A:A rH [tWH][V] 12.55 12.41; 30.23 17.83 -169.41 0.31 13.01
HP_Ribozyme 3GS8 24!C:38!D A:A rH [tWH][V] 12.06 13.06; 33.75 20.69 173.69 0.61 20.53
HP_Ribozyme 3GS8 26!C:36!D A:G WC [cWW][VIII] 12.45 49.0; 49.0 0.0 -14.08 0.2 20.96
HP_Ribozyme 3GS8 27!C:35!D C:G WC [cWW][XIX] 10.56 55.44; 52.97 2.47 -15.33 0.65 23.08
HP_Ribozyme 3GS8 28!C:34!D A:U WC [cWW][XX] 10.69 53.83; 54.37 0.54 -14.36 0.29 20.14
HP_Ribozyme 3GS8 29!C:33!D C:G WC [cWW][XIX] 10.68 54.39; 57.0 2.61 -7.83 0.38 13.71
HP_Ribozyme 3GS8 30!C:32!D G:C WC [cWW][XIX] 10.88 52.22; 52.84 0.61 -9.02 0.31 9.71
HP_Ribozyme 3GS8 31!C:31!D A:U WC [cWW][XX] 10.77 55.05; 49.98 5.07 -0.36 0.51 3.71