Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3HHN BPC Identified: 116 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Ribozyme 3HHN -7!C:19!C U:A WC [cWW][XX] 11.11 46.77; 54.61 7.84 -5.14 0.28 11.17
Ribozyme 3HHN -6!C:18!C C:G WC [cWW][XIX] 10.94 49.52; 55.14 5.63 -15.54 0.31 24.81
Ribozyme 3HHN -5!C:17!C C:G WC [cWW][XIX] 10.7 55.47; 54.7 0.78 -0.94 0.11 6.14
Ribozyme 3HHN -4!C:16!C A:U WC [cWW][XX] 10.59 49.75; 55.87 6.12 -4.98 0.12 9.34
Ribozyme 3HHN -3!C:26!C G:A fS [tSW][X] 9.82 115.49; 9.53 105.95 103.27 0.85 22.79
Ribozyme 3HHN -3!C:15!C G:C WC [cWW][XIX] 10.63 52.61; 58.99 6.38 -10.37 0.22 17.4
Ribozyme 3HHN -2!C:14!C U:A WC [cWW][XX] 10.54 56.3; 56.43 0.13 -8.33 0.12 13.34
Ribozyme 3HHN -1!C:13!C A:U WC [cWW][XX] 10.53 54.83; 56.83 1.99 -2.75 0.04 5.82
Ribozyme 3HHN 1!C:12!C G:C WC [cWW][XIX] 10.46 56.81; 60.84 4.03 -11.34 0.12 18.41
Ribozyme 3HHN 2!C:11!C G:A S [tSH][XI] 9.4 104.31; 7.0 97.31 8.18 0.68 16.27
Ribozyme 3HHN 3!C:46!C A:G rpS [cSS][-] 5.79 150.53; 104.54 45.99 -30.93 0.4 42.84
Ribozyme 3HHN 5!C:120!C C:G WC [cWW][XIX] 10.75 47.09; 58.69 11.6 -9.41 0.48 19.17
Ribozyme 3HHN 6!C:119!C A:U WC [cWW][XX] 10.59 56.2; 64.32 8.13 -6.97 0.27 14.66
Ribozyme 3HHN 7!C:118!C C:G Wb* [---][-] 10.98 47.86; 62.78 14.92 -5.31 0.35 13.49
Ribozyme 3HHN 8!C:117!C U:A WC [cWW][XX] 10.45 56.27; 54.5 1.78 -8.99 0.06 11.65
Ribozyme 3HHN 9!C:116!C A:U WC [cWW][XX] 10.66 57.34; 55.36 1.98 -9.59 0.96 25.27
Ribozyme 3HHN 10!C:115!C U:A WC [cWW][XX] 10.77 54.98; 53.55 1.42 -12.57 0.59 21.63
Ribozyme 3HHN 18!C:22!C G:A rpS [cSS][-] 5.61 108.54; 146.94 38.4 -33.47 0.27 24.01
Ribozyme 3HHN 29!C:72!C A:G rS [tSS][-] 8.21 51.78; 92.94 41.16 -168.99 0.53 40.04
Ribozyme 3HHN 31!C:84!C A:U pfS [cSW][-] 9.31 38.92; 120.48 81.55 -31.94 1.55 28.26
Ribozyme 3HHN 32!C:74!C A:G fS [tSW][X] 9.56 6.73; 116.66 109.93 172.54 1.27 24.49
Ribozyme 3HHN 33!C:74!C A:G fS(sb:O2*-N1)_1 [---][-] 8.8 45.71; 106.35 60.64 165.16 2.26 19.46
Ribozyme 3HHN 35!C:81!C C:G WC [cWW][XIX] 10.23 58.64; 52.27 6.37 -8.39 0.03 12.9
Ribozyme 3HHN 36!C:80!C U:A WC [cWW][XX] 10.39 53.05; 55.92 2.87 -3.65 0.14 8.25
Ribozyme 3HHN 37!C:79!C G:C WC [cWW][XIX] 10.62 59.26; 49.87 9.39 -5.46 0.0 8.37
Ribozyme 3HHN 38!C:78!C C:G WC [cWW][XIX] 10.61 58.15; 52.19 5.96 -6.73 0.03 14.52
Ribozyme 3HHN 39!C:77!C C:G WC [cWW][XIX] 10.96 54.3; 52.04 2.26 -8.9 0.03 13.04
Ribozyme 3HHN 40!C:44!C C:G WC [cWW][XIX] 10.75 52.38; 49.37 3.01 -3.63 0.11 3.85
Ribozyme 3HHN 41!C:43!C G:A S(sb:O2*-N7) [---][-] 7.59 83.82; 35.03 48.79 -172.45 1.99 23.59
Ribozyme 3HHN 46!C:113!C G:C WC [cWW][XIX] 10.86 56.06; 52.75 3.3 -7.46 0.07 16.34
Ribozyme 3HHN 48!C:112!C U:A WC [cWW][XX] 10.16 60.5; 58.9 1.6 -6.2 0.57 19.53
Ribozyme 3HHN 49!C:111!C U:A WC [cWW][XX] 10.49 53.83; 61.74 7.92 -2.31 0.2 5.88
Ribozyme 3HHN 50!C:110!C G:C WC [cWW][XIX] 10.52 50.81; 58.87 8.06 -12.4 0.28 16.92
Ribozyme 3HHN 51!C:109!C A:U WC [cWW][XX] 10.51 50.31; 55.12 4.81 -10.05 0.2 11.45
Ribozyme 3HHN 52!C:108!C G:C WC [cWW][XIX] 10.5 52.73; 57.57 4.83 -12.09 0.29 17.3
Ribozyme 3HHN 53!C:107!C A:U WC [cWW][XX] 10.3 61.16; 58.96 2.2 -1.52 0.65 14.8
Ribozyme 3HHN 54!C:106!C A:U WC [cWW][XX] 10.3 64.46; 57.77 6.69 1.42 0.24 7.63
Ribozyme 3HHN 55!C:69!C C:G WC [cWW][XIX] 10.62 53.54; 53.61 0.07 -8.92 0.15 13.98
Ribozyme 3HHN 56!C:68!C A:U WC [cWW][XX] 10.39 53.53; 59.41 5.88 -16.82 0.04 21.13
Ribozyme 3HHN 57!C:67!C U:A WC [cWW][XX] 10.53 50.33; 56.5 6.16 -10.08 0.14 13.94
Ribozyme 3HHN 1001!C:1018!C A:U WC [cWW][XX] 10.81 52.81; 47.48 5.33 -4.93 0.3 14.78
Ribozyme 3HHN 1002!C:1017!C C:G WC [cWW][XIX] 11.04 45.92; 55.55 9.63 -3.45 0.31 12.98
Ribozyme 3HHN 1003!C:1016!C C:G WC [cWW][XIX] 10.72 55.27; 51.22 4.05 -0.35 0.48 8.35
Ribozyme 3HHN 1004!C:1015!C C:G WC [cWW][XIX] 10.69 54.09; 55.57 1.48 -3.14 0.17 7.56
Ribozyme 3HHN 71!C:86!C A:C fS(sb:O2*-N1)_1 [tSS][-] 8.49 53.97; 102.66 48.69 141.05 0.87 37.95
Ribozyme 3HHN 72!C:85!C G:C WC [cWW][XIX] 10.71 53.93; 52.22 1.71 -1.55 0.09 6.58
Ribozyme 3HHN 73!C:84!C A:U WC [cWW][XX] 10.23 58.7; 55.02 3.67 -1.77 0.62 14.26
Ribozyme 3HHN 74!C:83!C G:C WC [cWW][XIX] 10.73 54.85; 52.99 1.86 -3.85 0.17 6.94
Ribozyme 3HHN 75!C:82!C G:C WC [cWW][XIX] 10.76 57.28; 49.46 7.82 1.04 0.14 6.63
Ribozyme 3HHN 86!C:105!C C:G WC [cWW][XIX] 10.55 55.22; 49.4 5.82 -8.47 0.14 13.13
Ribozyme 3HHN 87!C:104!C G:C WC [cWW][XIX] 10.67 56.29; 58.07 1.78 -16.28 0.45 23.79
Ribozyme 3HHN 88!C:103!C G:A WC [cWW][VIII] 12.55 52.72; 55.25 2.53 -9.53 0.49 17.19
Ribozyme 3HHN 89!C:102!C U:A WC [cWW][XX] 11.12 44.57; 52.47 7.91 -6.25 0.03 9.04
Ribozyme 3HHN 90!C:101!C G:C WC [cWW][XIX] 10.57 55.3; 56.32 1.02 -6.36 0.02 10.58
Ribozyme 3HHN 91!C:100!C G:C WC [cWW][XIX] 10.9 51.57; 51.85 0.27 -5.28 0.03 7.23
Ribozyme 3HHN 92!C:99!C G:C WC [cWW][XIX] 10.67 61.7; 49.69 12.01 3.37 0.45 30.2
Ribozyme 3HHN 94!C:96!C U:A S(sb:O2*-N7) [---][-] 6.53 79.09; 39.68 39.41 -169.02 0.72 28.75
Ribozyme 3HHN -7!E:19!E U:A WC [cWW][XX] 11.11 46.78; 54.65 7.87 -5.08 0.28 11.16
Ribozyme 3HHN -6!E:18!E C:G WC [cWW][XIX] 10.93 49.51; 55.15 5.63 -15.48 0.32 24.69
Ribozyme 3HHN -5!E:17!E C:G WC [cWW][XIX] 10.71 55.44; 54.63 0.81 -0.89 0.1 5.93
Ribozyme 3HHN -4!E:16!E A:U WC [cWW][XX] 10.59 49.8; 55.93 6.13 -4.98 0.12 9.26
Ribozyme 3HHN -3!E:26!E G:A fS [tSW][X] 9.82 115.43; 9.63 105.8 103.05 0.85 22.86
Ribozyme 3HHN -3!E:15!E G:C WC [cWW][XIX] 10.63 52.57; 58.98 6.4 -10.4 0.22 17.21
Ribozyme 3HHN -2!E:14!E U:A WC [cWW][XX] 10.54 56.23; 56.44 0.22 -8.26 0.15 13.41
Ribozyme 3HHN -1!E:13!E A:U WC [cWW][XX] 10.53 54.88; 56.74 1.86 -2.55 0.04 5.68
Ribozyme 3HHN 1!E:12!E G:C WC [cWW][XIX] 10.46 56.82; 60.7 3.88 -11.36 0.14 18.39
Ribozyme 3HHN 2!E:11!E G:A S [tSH][XI] 9.63 100.9; 11.88 89.02 2.33 0.45 16.6
Ribozyme 3HHN 3!E:113!E A:C fS(sb:O2*-N1)_1 [tSS][-] 8.26 56.33; 86.95 30.61 151.23 2.53 49.9
Ribozyme 3HHN 3!E:46!E A:G rpS [cSS][-] 5.71 147.86; 106.63 41.22 -22.62 0.44 36.92
Ribozyme 3HHN 5!E:120!E C:G WC [cWW][XIX] 10.93 42.67; 53.7 11.03 -16.44 0.37 16.09
Ribozyme 3HHN 6!E:119!E A:U WC [cWW][XX] 10.36 58.43; 56.2 2.23 -11.92 0.02 14.27
Ribozyme 3HHN 7!E:118!E C:G WC [cWW][XIX] 10.85 52.88; 55.01 2.13 -9.39 0.43 16.82
Ribozyme 3HHN 8!E:117!E U:A WC [cWW][XX] 10.65 59.28; 51.79 7.48 -6.7 0.32 17.93
Ribozyme 3HHN 9!E:116!E A:U WC [cWW][XX] 10.23 60.85; 53.54 7.31 -0.96 0.0 24.49
Ribozyme 3HHN 10!E:115!E U:A WC [cWW][XX] 11.12 49.21; 52.29 3.09 -9.82 0.09 17.92
Ribozyme 3HHN 18!E:22!E G:A rpS [cSS][-] 5.61 108.54; 146.93 38.39 -33.57 0.25 24.07
Ribozyme 3HHN 29!E:72!E A:G rS [tSS][-] 8.18 52.75; 93.5 40.75 -169.51 0.58 40.03
Ribozyme 3HHN 31!E:84!E A:U pfS [cSW][-] 9.68 35.13; 117.02 81.9 -29.4 1.18 28.08
Ribozyme 3HHN 32!E:74!E A:G fS [tSW][X] 9.73 8.38; 115.6 107.23 157.33 1.31 27.54
Ribozyme 3HHN 33!E:74!E A:G fS(sb:O2*-N1)_1 [---][-] 8.54 49.57; 105.41 55.84 168.16 2.24 21.21
Ribozyme 3HHN 35!E:81!E C:G WC [cWW][XIX] 10.3 59.21; 55.31 3.89 -6.14 0.07 20.45
Ribozyme 3HHN 36!E:80!E U:A WC [cWW][XX] 10.31 55.91; 58.29 2.38 -3.94 0.13 5.41
Ribozyme 3HHN 37!E:79!E G:C WC [cWW][XIX] 10.5 47.84; 56.53 8.7 -9.29 0.12 11.33
Ribozyme 3HHN 38!E:78!E C:G WC [cWW][XIX] 10.64 56.6; 51.5 5.1 -5.62 0.35 10.83
Ribozyme 3HHN 39!E:77!E C:G WC [cWW][XIX] 10.71 57.48; 51.84 5.64 -3.05 0.06 3.4
Ribozyme 3HHN 40!E:44!E C:G WC [cWW][XIX] 10.71 53.83; 54.36 0.53 -5.88 0.26 10.1
Ribozyme 3HHN 41!E:43!E G:A S(sb:O2*-N7) [---][-] 7.35 102.65; 37.5 65.15 -167.82 0.84 27.04
Ribozyme 3HHN 46!E:113!E G:C WC [cWW][XIX] 10.55 55.84; 55.03 0.81 -5.23 0.11 14.77
Ribozyme 3HHN 48!E:112!E U:A WC [cWW][XX] 10.13 59.23; 58.53 0.7 -8.8 0.58 17.13
Ribozyme 3HHN 49!E:111!E U:A WC [cWW][XX] 10.37 58.22; 56.77 1.46 -8.54 0.0 11.38
Ribozyme 3HHN 50!E:110!E G:C WC [cWW][XIX] 10.82 56.14; 53.75 2.38 -4.2 0.06 9.42
Ribozyme 3HHN 51!E:109!E A:U WC [cWW][XX] 10.79 54.01; 51.86 2.15 -6.92 0.02 12.71
Ribozyme 3HHN 52!E:108!E G:C WC [cWW][XIX] 10.72 51.07; 56.21 5.14 -11.9 0.17 19.76
Ribozyme 3HHN 53!E:107!E A:U WC [cWW][XX] 10.56 58.37; 55.53 2.84 -10.82 0.12 24.75
Ribozyme 3HHN 54!E:106!E A:U WC [cWW][XX] 10.26 61.3; 57.46 3.84 -5.76 0.07 9.01
Ribozyme 3HHN 55!E:69!E C:G WC [cWW][XIX] 10.73 52.5; 51.32 1.18 -7.4 0.22 10.1
Ribozyme 3HHN 56!E:68!E A:U WC [cWW][XX] 11.49 49.8; 45.88 3.92 -19.72 0.44 28.24
Ribozyme 3HHN 57!E:67!E U:A WC [cWW][XX] 10.42 57.87; 57.31 0.56 -4.99 0.16 9.8
Ribozyme 3HHN 1001!E:1018!E A:U WC [cWW][XX] 10.16 55.84; 65.81 9.97 -12.17 0.03 16.33
Ribozyme 3HHN 1002!E:1017!E C:G WC [cWW][XIX] 10.63 55.64; 53.02 2.62 -9.18 0.58 19.43
Ribozyme 3HHN 1003!E:1016!E C:G WC [cWW][XIX] 10.82 59.74; 53.44 6.29 -8.4 0.05 9.67
Ribozyme 3HHN 1004!E:1015!E C:G WC [cWW][XIX] 11.1 54.31; 52.23 2.08 5.53 0.54 1.78
Ribozyme 3HHN 71!E:86!E A:C fS(sb:O2*-N1)_1 [tSS][-] 8.29 53.74; 101.3 47.56 142.29 0.72 36.73
Ribozyme 3HHN 72!E:85!E G:C WC [cWW][XIX] 10.63 53.78; 51.96 1.82 -2.08 0.14 7.05
Ribozyme 3HHN 73!E:84!E A:U WC [cWW][XX] 10.36 56.73; 51.83 4.91 -4.54 0.34 13.19
Ribozyme 3HHN 74!E:83!E G:C WC [cWW][XIX] 10.66 53.01; 53.26 0.26 -7.81 0.28 7.28
Ribozyme 3HHN 75!E:82!E G:C WC [cWW][XIX] 10.49 54.98; 54.86 0.12 2.01 0.34 5.26
Ribozyme 3HHN 86!E:105!E C:G WC [cWW][XIX] 10.56 53.1; 49.03 4.07 -8.58 0.13 13.32
Ribozyme 3HHN 87!E:104!E G:C WC [cWW][XIX] 10.69 50.99; 51.49 0.5 -16.87 0.3 23.47
Ribozyme 3HHN 88!E:103!E G:A WC [cWW][VIII] 12.61 49.22; 47.15 2.07 -13.05 0.15 19.63
Ribozyme 3HHN 89!E:102!E U:A WC [cWW][XX] 11.02 49.68; 51.45 1.77 -16.57 0.43 17.43
Ribozyme 3HHN 90!E:101!E G:C WC [cWW][XIX] 10.66 53.39; 55.87 2.49 -5.16 0.09 7.35
Ribozyme 3HHN 91!E:100!E G:C WC [cWW][XIX] 11.04 54.89; 48.96 5.94 -4.62 0.4 12.55
Ribozyme 3HHN 92!E:99!E G:C WC [cWW][XIX] 11.33 51.98; 44.67 7.31 -1.36 0.72 16.79
Ribozyme 3HHN 93!E:98!E U:A S [tSH][-] 10.68 71.19; 0.22 70.97 137.41 0.38 9.63
Ribozyme 3HHN 94!E:96!E U:A S(sb:O2*-N7) [---][-] 6.67 78.01; 41.02 36.99 -167.53 1.21 26.56