Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3I2Q
BPC Identified: 30
Ambiguities: 0
| HP_ribozyme |
3I2Q |
-4!A:13!B |
C:G |
WC [cWW][XIX] |
10.75 |
54.69; 55.09 |
0.4 |
-3.31 |
0.18 |
20.64 |
| HP_ribozyme |
3I2Q |
-3!A:12!B |
C:G |
WC [cWW][XIX] |
10.48 |
55.33; 55.08 |
0.24 |
-0.75 |
0.04 |
3.08 |
| HP_ribozyme |
3I2Q |
-2!A:11!B |
C:G |
WC [cWW][XIX] |
10.47 |
59.96; 56.82 |
3.14 |
3.01 |
0.2 |
6.59 |
| HP_ribozyme |
3I2Q |
1!A:25!B |
G:C |
WC [cWW][XIX] |
10.54 |
51.3; 54.53 |
3.23 |
-14.76 |
0.39 |
19.48 |
| HP_ribozyme |
3I2Q |
2!A:8!B |
U:G |
S*_1 [tHS][-] |
10.94 |
12.53; 105.49 |
92.97 |
25.67 |
0.1 |
10.52 |
| HP_ribozyme |
3I2Q |
3!A:7!B |
C:A |
Wb* [cWW][-] |
11.03 |
47.2; 72.38 |
25.18 |
-3.76 |
0.22 |
30.63 |
| HP_ribozyme |
3I2Q |
4!A:6!B |
C:G |
WC [cWW][XIX] |
10.6 |
57.08; 57.99 |
0.91 |
-3.9 |
0.4 |
14.02 |
| HP_ribozyme |
3I2Q |
5!A:5!B |
A:U |
WC [cWW][XX] |
10.38 |
58.53; 56.63 |
1.91 |
-2.2 |
0.02 |
5.47 |
| HP_ribozyme |
3I2Q |
6!A:4!B |
C:G |
WC [cWW][XIX] |
10.43 |
60.78; 58.13 |
2.65 |
-2.07 |
0.19 |
8.25 |
| HP_ribozyme |
3I2Q |
7!A:3!B |
C:G |
WC [cWW][XIX] |
10.16 |
61.12; 55.46 |
5.66 |
-5.33 |
0.17 |
12.09 |
| HP_ribozyme |
3I2Q |
8!A:2!B |
G:C |
WC [cWW][XIX] |
10.31 |
59.17; 61.97 |
2.79 |
-6.7 |
0.14 |
12.65 |
| HP_ribozyme |
3I2Q |
10!B:25!B |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.45 |
93.22; 151.83 |
58.62 |
-65.54 |
0.07 |
46.98 |
| HP_ribozyme |
3I2Q |
11!B:24!B |
G:A |
rpS(sb:O2*-N3) [---][-] |
5.52 |
152.01; 93.49 |
58.52 |
-74.04 |
1.4 |
50.24 |
| HP_ribozyme |
3I2Q |
15!B:49!C |
G:C |
WC [cWW][XIX] |
10.64 |
54.81; 56.88 |
2.06 |
-8.75 |
0.44 |
6.81 |
| HP_ribozyme |
3I2Q |
16!B:48!C |
G:C |
WC [cWW][XIX] |
10.67 |
52.62; 56.08 |
3.46 |
-8.45 |
0.26 |
15.73 |
| HP_ribozyme |
3I2Q |
17!B:47!C |
C:G |
WC [cWW][XIX] |
10.62 |
56.4; 58.04 |
1.65 |
-6.25 |
0.22 |
11.55 |
| HP_ribozyme |
3I2Q |
18!B:46!C |
A:U |
WC [cWW][XX] |
10.33 |
58.36; 59.02 |
0.66 |
-2.08 |
0.12 |
8.88 |
| HP_ribozyme |
3I2Q |
19!B:45!C |
G:C |
WC [cWW][XIX] |
10.36 |
56.79; 59.92 |
3.13 |
1.05 |
0.1 |
10.19 |
| HP_ribozyme |
3I2Q |
20!B:44!C |
A:C |
Wb* [cWW][-] |
10.23 |
76.54; 50.93 |
25.61 |
1.18 |
0.36 |
16.19 |
| HP_ribozyme |
3I2Q |
21!B:43!C |
G:A |
S [tSH][XI] |
9.45 |
97.73; 3.05 |
94.68 |
36.54 |
0.06 |
7.64 |
| HP_ribozyme |
3I2Q |
22!B:41!C |
A:U |
rH_1 [tWH][XXIV] |
9.85 |
20.93; 33.51 |
12.58 |
-171.3 |
0.26 |
7.72 |
| HP_ribozyme |
3I2Q |
23!B:40!C |
A:A |
rH [tWH][V] |
12.67 |
11.33; 27.9 |
16.58 |
172.76 |
0.56 |
22.42 |
| HP_ribozyme |
3I2Q |
24!B:38!C |
A:A |
rpS* [---][-] |
11.62 |
5.55; 52.33 |
46.78 |
149.16 |
0.28 |
11.12 |
| HP_ribozyme |
3I2Q |
26!B:36!C |
A:G |
WC [cWW][VIII] |
12.85 |
46.11; 46.67 |
0.56 |
-2.39 |
0.07 |
16.83 |
| HP_ribozyme |
3I2Q |
27!B:36!C |
C:G |
WC_Mo [cWW][XIX] |
10.18 |
76.96; 58.15 |
18.81 |
-14.14 |
2.05 |
10.33 |
| HP_ribozyme |
3I2Q |
27!B:35!C |
C:G |
WC [cWW][XIX] |
10.65 |
53.96; 54.61 |
0.65 |
-15.5 |
0.33 |
19.85 |
| HP_ribozyme |
3I2Q |
28!B:34!C |
A:U |
WC [cWW][XX] |
10.45 |
53.68; 56.52 |
2.84 |
-15.48 |
0.02 |
17.52 |
| HP_ribozyme |
3I2Q |
29!B:33!C |
C:G |
WC [cWW][XIX] |
10.54 |
56.28; 55.33 |
0.95 |
-11.23 |
0.41 |
15.9 |
| HP_ribozyme |
3I2Q |
30!B:32!C |
G:C |
WC [cWW][XIX] |
10.85 |
52.67; 54.2 |
1.53 |
-8.37 |
0.12 |
11.76 |
| HP_ribozyme |
3I2Q |
31!B:31!C |
A:U |
WC [cWW][XX] |
10.6 |
59.64; 52.76 |
6.87 |
-0.19 |
0.21 |
6.56 |