Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3I2S BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3I2S -4!A:13!B C:G WC [cWW][XIX] 10.64 55.01; 55.04 0.04 -6.76 0.3 20.91
HP_ribozyme 3I2S -3!A:12!B C:G WC [cWW][XIX] 10.45 54.84; 54.86 0.02 1.37 0.08 0.46
HP_ribozyme 3I2S -2!A:11!B C:G WC [cWW][XIX] 10.43 59.8; 56.06 3.74 3.45 0.23 6.92
HP_ribozyme 3I2S -1!A:9!B A:A S [tSH][-] 9.61 85.69; 7.37 78.33 -97.43 0.4 18.36
HP_ribozyme 3I2S 1!A:25!B G:C WC [cWW][XIX] 10.48 51.02; 53.98 2.96 -15.11 0.43 21.35
HP_ribozyme 3I2S 2!A:8!B U:G S*_1 [tHS][-] 11.27 14.04; 103.44 89.4 22.69 0.61 15.35
HP_ribozyme 3I2S 3!A:7!B C:A Wb* [cWW][-] 11.16 46.55; 68.15 21.6 -2.82 0.15 28.49
HP_ribozyme 3I2S 4!A:6!B C:G WC [cWW][XIX] 10.65 56.44; 59.03 2.58 -3.28 0.23 8.62
HP_ribozyme 3I2S 5!A:5!B A:U WC [cWW][XX] 10.41 58.46; 56.01 2.45 -2.08 0.09 6.88
HP_ribozyme 3I2S 6!A:4!B C:G WC [cWW][XIX] 10.68 59.0; 57.86 1.14 -2.09 0.31 11.85
HP_ribozyme 3I2S 7!A:3!B C:G WC [cWW][XIX] 10.24 62.21; 55.42 6.79 -6.71 0.19 11.6
HP_ribozyme 3I2S 8!A:2!B G:C WC [cWW][XIX] 10.44 60.27; 59.82 0.45 -6.08 0.18 10.25
HP_ribozyme 3I2S 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.49 93.86; 150.29 56.43 -69.09 0.31 49.68
HP_ribozyme 3I2S 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.3 152.1; 95.49 56.62 -67.02 1.41 47.51
HP_ribozyme 3I2S 15!B:49!C G:C WC [cWW][XIX] 10.67 52.88; 57.16 4.27 -9.63 0.16 12.47
HP_ribozyme 3I2S 16!B:48!C G:C WC [cWW][XIX] 10.67 52.65; 56.8 4.15 -8.2 0.24 14.84
HP_ribozyme 3I2S 17!B:47!C C:G WC [cWW][XIX] 10.7 56.43; 56.81 0.39 -7.16 0.29 19.83
HP_ribozyme 3I2S 18!B:46!C A:U WC [cWW][XX] 10.3 58.94; 58.65 0.28 -1.21 0.07 5.91
HP_ribozyme 3I2S 19!B:45!C G:C WC [cWW][XIX] 10.38 56.14; 57.66 1.52 1.26 0.05 8.4
HP_ribozyme 3I2S 20!B:44!C A:C Wb* [cWW][-] 10.32 75.92; 49.21 26.72 3.45 0.13 14.55
HP_ribozyme 3I2S 21!B:43!C G:A S [tSH][XI] 9.36 96.83; 3.55 93.27 44.62 0.01 9.66
HP_ribozyme 3I2S 22!B:41!C A:U rH_1 [tWH][XXIV] 9.78 22.71; 31.1 8.39 -165.7 0.58 14.21
HP_ribozyme 3I2S 23!B:40!C A:A rH [tWH][V] 12.52 12.49; 24.44 11.95 164.87 0.44 18.84
HP_ribozyme 3I2S 24!B:38!C A:A rpS* [---][-] 11.66 5.62; 50.1 44.48 162.87 0.51 13.29
HP_ribozyme 3I2S 26!B:36!C A:G WC [cWW][VIII] 12.7 46.81; 47.46 0.64 -0.37 0.03 18.97
HP_ribozyme 3I2S 27!B:35!C C:G WC [cWW][XIX] 10.67 54.39; 54.23 0.15 -15.91 0.29 19.4
HP_ribozyme 3I2S 28!B:34!C A:U WC [cWW][XX] 10.29 54.82; 56.86 2.04 -14.49 0.05 18.05
HP_ribozyme 3I2S 29!B:33!C C:G WC [cWW][XIX] 10.51 55.86; 54.88 0.98 -9.36 0.25 12.72
HP_ribozyme 3I2S 30!B:32!C G:C WC [cWW][XIX] 10.71 53.99; 53.41 0.59 -9.84 0.08 13.41
HP_ribozyme 3I2S 31!B:31!C A:U WC [cWW][XX] 10.48 59.57; 53.63 5.94 1.73 0.21 7.63