Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3I2U BPC Identified: 30 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HP_ribozyme 3I2U 2!A:13!B C:G WC [cWW][XIX] 10.37 56.02; 55.76 0.26 -10.45 0.12 21.64
HP_ribozyme 3I2U 3!A:12!B C:G WC [cWW][XIX] 10.64 55.26; 52.51 2.75 -8.74 0.12 10.09
HP_ribozyme 3I2U 4!A:11!B C:G WC [cWW][XIX] 10.52 60.89; 54.45 6.44 -2.74 0.3 1.54
HP_ribozyme 3I2U 5!A:9!B A:A S [tSH][-] 10.81 75.2; 4.25 70.95 -76.59 0.13 9.88
HP_ribozyme 3I2U 6!A:25!B G:C WC [cWW][XIX] 10.54 52.73; 56.04 3.31 -11.63 0.4 16.99
HP_ribozyme 3I2U 7!A:8!B U:G S*_1 [tHS][-] 11.34 5.75; 93.78 88.02 47.68 0.87 17.21
HP_ribozyme 3I2U 8!A:7!B C:A Wb* [cWW][-] 11.25 46.45; 70.71 24.26 2.92 0.09 30.42
HP_ribozyme 3I2U 9!A:6!B C:G WC [cWW][XIX] 10.6 59.62; 60.86 1.24 -2.74 0.48 18.72
HP_ribozyme 3I2U 10!A:5!B A:U WC [cWW][XX] 10.87 54.33; 51.64 2.7 -9.08 0.05 12.61
HP_ribozyme 3I2U 11!A:4!B C:G WC [cWW][XIX] 10.54 56.79; 55.65 1.14 -8.54 0.31 10.98
HP_ribozyme 3I2U 12!A:3!B C:G WC [cWW][XIX] 10.65 52.85; 53.07 0.22 -9.97 0.17 11.62
HP_ribozyme 3I2U 13!A:2!B G:C WC [cWW][XIX] 10.73 60.46; 61.65 1.19 -8.68 0.17 11.75
HP_ribozyme 3I2U 10!B:25!B A:C rpS(sb:O2*-N3) [cSS][-] 5.42 93.57; 151.42 57.86 -64.84 0.53 50.22
HP_ribozyme 3I2U 11!B:24!B G:A rpS(sb:O2*-N3) [---][-] 5.43 152.72; 91.05 61.67 -73.7 1.67 45.97
HP_ribozyme 3I2U 15!B:49!C G:C WC [cWW][XIX] 10.79 52.28; 57.28 5.0 -1.67 0.49 1.43
HP_ribozyme 3I2U 16!B:48!C G:C WC [cWW][XIX] 10.76 50.61; 55.54 4.93 -9.64 0.29 16.42
HP_ribozyme 3I2U 17!B:47!C C:G WC [cWW][XIX] 10.73 56.08; 58.12 2.04 -5.52 0.2 12.89
HP_ribozyme 3I2U 18!B:46!C A:U WC [cWW][XX] 10.3 58.06; 60.85 2.79 -3.6 0.0 9.67
HP_ribozyme 3I2U 19!B:45!C G:C WC [cWW][XIX] 10.43 54.7; 61.8 7.1 -0.88 0.09 12.98
HP_ribozyme 3I2U 20!B:44!C A:C Wb* [cWW][-] 10.31 77.25; 48.83 28.42 1.34 0.21 18.54
HP_ribozyme 3I2U 21!B:43!C G:A S [tSH][XI] 9.42 99.76; 4.17 95.59 44.7 0.11 6.33
HP_ribozyme 3I2U 22!B:41!C A:U rH_1 [tWH][XXIV] 9.56 19.09; 32.45 13.35 179.65 0.28 12.88
HP_ribozyme 3I2U 23!B:40!C A:A rH [tWH][V] 12.61 13.18; 28.88 15.71 166.12 0.59 20.26
HP_ribozyme 3I2U 24!B:38!C A:A rpS* [---][-] 11.92 4.09; 51.92 47.83 157.94 0.55 13.87
HP_ribozyme 3I2U 26!B:36!C A:G WC [cWW][VIII] 12.47 46.89; 45.97 0.92 -16.28 0.01 22.1
HP_ribozyme 3I2U 27!B:35!C C:G WC [cWW][XIX] 10.57 55.13; 54.3 0.84 -16.73 0.47 21.66
HP_ribozyme 3I2U 28!B:34!C A:U WC [cWW][XX] 10.35 55.15; 57.27 2.13 -16.39 0.16 22.84
HP_ribozyme 3I2U 29!B:33!C C:G WC [cWW][XIX] 10.59 56.5; 55.97 0.53 -11.11 0.33 12.53
HP_ribozyme 3I2U 30!B:32!C G:C WC [cWW][XIX] 10.79 53.0; 53.31 0.31 -8.96 0.03 11.43
HP_ribozyme 3I2U 31!B:31!C A:U WC [cWW][XX] 10.7 55.26; 52.11 3.15 -2.15 0.11 8.08