Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IIN BPC Identified: 111 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Group_I_RNA 3IIN 4!B:212!C G:C WC [cWW][XIX] 11.56 54.48; 47.78 6.69 12.33 0.26 11.64
Group_I_RNA 3IIN 5!B:211!C G:C WC [cWW][XIX] 10.74 52.75; 57.31 4.56 3.81 0.36 12.07
Group_I_RNA 3IIN 6!B:210!C C:G WC [cWW][XIX] 11.28 48.28; 40.73 7.55 0.53 0.72 18.87
Group_I_RNA 3IIN 7!B:209!C C:G WC_Mo [cWW][XIX] 10.64 55.77; 66.44 10.67 -9.58 0.12 10.65
Group_I_RNA 3IIN 8!B:208!C G:C WC [cWW][XIX] 10.8 55.25; 48.78 6.48 -2.1 0.54 10.07
Group_I_RNA 3IIN 9!B:207!C U:A WC [cWW][XX] 11.12 50.2; 50.7 0.5 -4.23 0.02 6.68
Group_I_RNA 3IIN 9!B:59!B U:A rpS(bs:O2-O2*) [---][-] 5.89 107.09; 156.86 49.77 -76.42 0.67 39.11
Group_I_RNA 3IIN 10!B:58!B G:A rpS(sb:O2*-N3) [---][-] 5.62 147.96; 95.86 52.1 -55.81 1.5 39.4
Group_I_RNA 3IIN 11!B:2!D U:A WC [cWW][XX] 11.15 51.39; 47.31 4.08 -8.43 0.9 28.21
Group_I_RNA 3IIN 12!B:1!D G:C WC [cWW][XIX] 10.69 49.06; 54.76 5.7 1.03 0.03 8.87
Group_I_RNA 3IIN 12!B:168!B G:A rpS [cSS][-] 7.0 98.57; 129.45 30.88 -47.05 0.91 19.14
Group_I_RNA 3IIN 13!B:168!B C:A rpS(sb:O2*-N3) [cSS][-] 4.22 161.15; 106.21 54.95 50.75 0.74 7.66
Group_I_RNA 3IIN 13!B:167!B C:A rpS(sb:O2*-N3) [cSS][-] 5.81 127.31; 97.63 29.67 -66.54 1.68 25.14
Group_I_RNA 3IIN 13!B:37!B C:G WC [cWW][XIX] 10.64 49.18; 57.61 8.44 -5.01 0.42 14.63
Group_I_RNA 3IIN 14!B:39!B C:A pfS [cSW][-] 9.35 122.23; 41.83 80.4 -27.35 0.48 48.0
Group_I_RNA 3IIN 14!B:36!B C:G WC [cWW][XIX] 11.44 45.7; 46.08 0.39 -2.17 0.31 11.07
Group_I_RNA 3IIN 15!B:35!B U:A WC [cWW][XX] 11.15 44.27; 55.21 10.94 -1.87 0.26 9.89
Group_I_RNA 3IIN 16!B:34!B U:A WC [cWW][XX] 11.41 49.69; 47.09 2.59 -1.74 0.03 6.36
Group_I_RNA 3IIN 17!B:33!B G:C WC [cWW][XIX] 11.47 54.56; 46.48 8.07 6.27 0.07 14.15
Group_I_RNA 3IIN 18!B:33!B C:C WC [---][-] 8.8 65.75; 55.55 10.19 -16.37 1.71 5.86
Group_I_RNA 3IIN 18!B:32!B C:G WC [cWW][XIX] 10.87 54.08; 54.09 0.02 1.59 0.23 18.02
Group_I_RNA 3IIN 19!B:31!B G:C WC [cWW][XIX] 10.69 57.78; 54.03 3.75 -10.25 1.21 30.66
Group_I_RNA 3IIN 22!B:29!B G:C Wb* [---][-] 10.97 60.64; 45.32 15.32 8.99 0.71 7.1
Group_I_RNA 3IIN 23!B:28!B G:C WC [cWW][XIX] 10.99 55.84; 58.9 3.06 15.06 0.17 17.16
Group_I_RNA 3IIN 24!B:27!B G:A S [tSH][XI] 9.55 99.49; 11.53 87.97 -83.23 0.25 22.75
Group_I_RNA 3IIN 24!B:26!B G:A S(sb:O2*-N7) [---][-] 7.94 93.05; 31.68 61.37 -167.32 1.07 31.24
Group_I_RNA 3IIN 25!B:161!B A:A rWb* [tWW][I] 13.65 29.83; 32.64 2.81 121.45 0.75 34.2
Group_I_RNA 3IIN 26!B:163!B A:G fS(sb:O2*-N6) [---][-] 8.73 37.23; 104.33 67.1 168.47 1.38 44.74
Group_I_RNA 3IIN 26!B:148!B A:U rpS(sb:O2*-N3) [cSS][-] 5.81 97.74; 141.31 43.57 -51.69 0.2 26.72
Group_I_RNA 3IIN 27!B:163!B A:G rS [tSS][-] 7.57 67.06; 83.73 16.67 166.53 0.6 35.96
Group_I_RNA 3IIN 27!B:147!B A:C rpS(bs:O2-O2*) [cSS][-] 5.96 155.09; 98.82 56.28 -72.28 0.07 31.0
Group_I_RNA 3IIN 28!B:164!B C:G rS(ss:O2*-O2*) [---][-] 5.59 151.95; 149.44 2.51 -112.3 1.75 28.52
Group_I_RNA 3IIN 36!B:38!B G:G pS_1 [cSH][-] 9.93 112.27; 28.81 83.46 -24.32 0.44 50.63
Group_I_RNA 3IIN 41!B:143!B G:C WC [cWW][XIX] 10.4 49.3; 59.1 9.8 1.46 0.17 6.78
Group_I_RNA 3IIN 42!B:142!B G:C WC [cWW][XIX] 10.44 51.32; 60.29 8.97 -2.26 0.27 7.0
Group_I_RNA 3IIN 43!B:141!B U:A WC [cWW][XX] 10.48 56.21; 53.32 2.88 -3.06 0.28 8.07
Group_I_RNA 3IIN 44!B:140!B G:C WC [cWW][XIX] 10.61 51.29; 61.61 10.32 -6.62 0.12 11.2
Group_I_RNA 3IIN 45!B:139!B U:G WC [---][-] 10.28 63.78; 50.78 13.0 -13.25 0.28 23.73
Group_I_RNA 3IIN 46!B:138!B C:G WC [cWW][XIX] 11.03 51.42; 55.26 3.84 -14.51 0.34 24.8
Group_I_RNA 3IIN 46!B:97!B C:A rpS(sb:O2*-N3) [cSS][-] 6.0 138.3; 94.47 43.83 -73.73 0.3 35.41
Group_I_RNA 3IIN 47!B:136!B A:A rH [tWH][V] 12.19 28.2; 20.26 7.94 -167.65 0.08 7.44
Group_I_RNA 3IIN 48!B:96!B A:C rpS(sb:O2*-N3) [cSS][-] 6.02 90.73; 152.39 61.66 -30.76 0.76 25.08
Group_I_RNA 3IIN 49!B:123!B A:G rS [tSS][-] 8.6 62.65; 84.09 21.44 164.76 0.32 14.43
Group_I_RNA 3IIN 49!B:95!B A:C rpS(bs:O2-O2*) [cSS][-] 5.71 150.22; 109.81 40.41 -41.34 1.16 6.51
Group_I_RNA 3IIN 51!B:93!B U:A WC [cWW][XX] 10.14 57.9; 60.88 2.97 5.72 0.06 7.76
Group_I_RNA 3IIN 52!B:125!B C:G pS*(bs:N4-O2*) [---][-] 8.74 15.32; 150.76 135.44 5.52 0.05 2.26
Group_I_RNA 3IIN 52!B:92!B C:G WC [cWW][XIX] 10.38 56.32; 51.2 5.12 1.63 0.4 4.83
Group_I_RNA 3IIN 53!B:91!B G:C WC [cWW][XIX] 10.53 55.12; 57.7 2.58 3.99 0.04 5.99
Group_I_RNA 3IIN 54!B:90!B G:C WC [cWW][XIX] 10.82 55.84; 47.55 8.29 3.37 0.22 4.7
Group_I_RNA 3IIN 55!B:89!B C:G WC [cWW][XIX] 10.6 56.35; 47.15 9.2 -5.36 0.27 9.16
Group_I_RNA 3IIN 56!B:88!B G:C WC [cWW][XIX] 10.41 50.98; 59.09 8.11 -6.44 0.08 23.01
Group_I_RNA 3IIN 57!B:87!B A:A S [tSH][-] 9.52 91.3; 10.88 80.42 -31.8 0.53 13.89
Group_I_RNA 3IIN 58!B:86!B A:A S [tSH][-] 9.73 4.61; 86.06 81.46 59.73 0.28 8.67
Group_I_RNA 3IIN 59!B:85!B A:C sWb [---][-] 11.38 23.06; 64.55 41.49 6.25 0.69 23.02
Group_I_RNA 3IIN 60!B:84!B C:G WC [cWW][XIX] 10.75 51.84; 46.99 4.85 -11.59 0.74 31.41
Group_I_RNA 3IIN 61!B:83!B C:G WC [cWW][XIX] 10.53 56.81; 48.47 8.34 -8.0 0.14 12.64
Group_I_RNA 3IIN 62!B:191!C U:A rpS(sb:O2*-N3) [cSS][-] 5.9 151.9; 94.61 57.29 -83.44 0.1 37.48
Group_I_RNA 3IIN 62!B:81!B U:A rH_1 [tWH][XXIV] 9.5 43.88; 16.4 27.48 172.04 0.26 9.14
Group_I_RNA 3IIN 63!B:64!B A:A pS [cSH][-] 6.33 145.01; 40.06 104.95 20.76 0.81 24.14
Group_I_RNA 3IIN 65!B:80!B G:U Wb [cWW][XXVIII] 10.66 43.39; 70.08 26.7 -5.11 0.13 13.64
Group_I_RNA 3IIN 66!B:79!B C:G WC [cWW][XIX] 10.96 47.88; 52.55 4.67 -12.7 0.32 13.64
Group_I_RNA 3IIN 67!B:78!B G:C WC [cWW][XIX] 10.7 49.96; 57.57 7.61 -2.84 0.58 14.48
Group_I_RNA 3IIN 68!B:77!B C:G WC_Mo [cWW][XIX] 10.48 70.87; 55.49 15.39 -3.06 0.3 12.06
Group_I_RNA 3IIN 69!B:76!B C:G Wb [---][-] 11.34 60.06; 42.16 17.9 6.75 0.77 1.91
Group_I_RNA 3IIN 70!B:75!B C:G Wb [---][-] 10.53 60.41; 46.53 13.88 2.73 0.05 2.38
Group_I_RNA 3IIN 81!B:190!B A:A rWb* [tWW][I] 13.95 33.67; 33.97 0.3 111.14 1.01 39.77
Group_I_RNA 3IIN 83!B:192!C G:A rS [tSS][-] 7.78 82.05; 72.44 9.61 167.69 1.42 27.28
Group_I_RNA 3IIN 84!B:193!C G:G rS(ss:O2*-O2*)_1 [---][-] 5.56 153.41; 144.87 8.53 -127.65 0.52 33.21
Group_I_RNA 3IIN 92!B:125!B* G:G S_1 [tSH][-]; S_2_mo [---][-] 11.27 3.98; 89.92 85.94 19.72 0.14 3.01
Group_I_RNA 3IIN 94!B:124!B G:U Wb [cWW][XXVIII] 10.65 39.07; 65.24 26.17 -3.63 0.19 13.95
Group_I_RNA 3IIN 95!B:123!B C:G WC [cWW][XIX] 10.56 55.94; 51.4 4.55 -6.62 0.26 14.48
Group_I_RNA 3IIN 96!B:122!B C:G WC [cWW][XIX] 10.81 51.39; 59.68 8.29 6.34 0.18 8.77
Group_I_RNA 3IIN 98!B:139!B A:G rS [tSS][-] 8.78 42.25; 100.12 57.87 172.35 0.19 24.89
Group_I_RNA 3IIN 100!B:119!B C:G WC [cWW][XIX] 10.83 48.0; 51.59 3.6 5.03 0.33 32.81
Group_I_RNA 3IIN 102!B:117!B U:A Wb* [---][-] 10.65 49.23; 64.14 14.91 0.78 0.54 18.2
Group_I_RNA 3IIN 103!B:116!B C:G WC [cWW][XIX] 10.71 49.4; 58.24 8.83 -3.32 0.12 8.9
Group_I_RNA 3IIN 104!B:115!B G:C WC [cWW][XIX] 10.88 55.2; 47.18 8.01 5.22 0.45 20.15
Group_I_RNA 3IIN 105!B:114!B C:G Wb*_Mo [---][-] 10.26 63.43; 73.17 9.73 11.5 1.1 23.51
Group_I_RNA 3IIN 107!B:112!B G:C WC [cWW][XIX] 10.62 55.55; 62.29 6.75 3.21 0.14 20.24
Group_I_RNA 3IIN 1001!B:1014!B C:G WC [cWW][XIX] 11.14 50.57; 53.97 3.41 -4.51 0.29 23.13
Group_I_RNA 3IIN 1002!B:1013!B C:G WC [cWW][XIX] 11.21 47.96; 49.27 1.31 7.71 0.16 7.18
Group_I_RNA 3IIN 128!B:178!B G:C WC [cWW][XIX] 11.16 53.78; 49.28 4.5 -13.91 1.1 30.82
Group_I_RNA 3IIN 128!B:177!B G:C WC_mo [cWW][XIX] 13.32 40.14; 31.04 9.09 16.58 1.79 7.71
Group_I_RNA 3IIN 129!B:178!B A:C S [tSH][-] 9.62 9.99; 92.38 82.39 -41.85 1.28 31.71
Group_I_RNA 3IIN 130!B:206!C G:G H_1 [cWH][VI] 11.65 25.45; 63.16 37.71 -9.27 0.26 11.53
Group_I_RNA 3IIN 130!B:177!B G:C Wb [---][-] 10.2 50.69; 75.35 24.67 -8.52 0.12 11.29
Group_I_RNA 3IIN 131!B:176!B A:U WC [cWW][XX] 10.35 51.75; 57.64 5.89 -1.24 0.44 11.55
Group_I_RNA 3IIN 132!B:175!B C:G WC [cWW][XIX] 10.81 47.78; 55.64 7.86 2.31 0.24 13.67
Group_I_RNA 3IIN 132!B:172!B C:A rH* [---][-] 12.36 15.78; 51.07 35.28 141.85 0.89 15.51
Group_I_RNA 3IIN 133!B:174!B U:A WC [cWW][XX] 10.66 54.21; 47.72 6.5 -4.49 0.2 9.05
Group_I_RNA 3IIN 134!B:173!B A:U WC [cWW][XX] 11.72 46.83; 53.91 7.08 -13.75 0.82 23.06
Group_I_RNA 3IIN 135!B:170!B G:G rH_1 [tWH][VII] 11.14 40.9; 31.81 9.08 139.61 0.77 23.92
Group_I_RNA 3IIN 144!B:166!B C:G WC [cWW][XIX] 10.9 54.75; 46.26 8.49 -3.36 0.02 9.02
Group_I_RNA 3IIN 145!B:165!B A:U WC [cWW][XX] 10.35 57.22; 56.05 1.17 -11.76 0.2 16.55
Group_I_RNA 3IIN 146!B:164!B C:G WC [cWW][XIX] 10.53 56.12; 47.36 8.76 -9.92 0.4 20.03
Group_I_RNA 3IIN 147!B:163!B C:G WC [cWW][XIX] 10.54 55.23; 50.76 4.46 -1.83 0.33 11.49
Group_I_RNA 3IIN 148!B:161!B U:A rH_1 [tWH][XXIV] 9.58 35.44; 15.61 19.84 154.8 0.94 11.03
Group_I_RNA 3IIN 151!B:160!B G:U Wb [cWW][XXVIII] 10.63 40.18; 57.12 16.94 -5.19 0.03 5.72
Group_I_RNA 3IIN 152!B:159!B G:C WC [cWW][XIX] 10.73 49.77; 61.06 11.29 -6.87 0.25 6.95
Group_I_RNA 3IIN 153!B:158!B C:G WC [cWW][XIX] 10.7 54.71; 50.63 4.07 0.42 0.1 8.22
Group_I_RNA 3IIN 168!B:1!D A:C fS(sb:O2*-N1)_1 [tSS][-] 8.51 50.36; 92.62 42.26 171.7 0.58 12.89
Group_I_RNA 3IIN 180!B:204!C G:C WC_Mo [cWW][XIX] 10.45 57.48; 64.84 7.36 -18.92 0.07 26.8
Group_I_RNA 3IIN 181!B:203!C G:C WC [cWW][XIX] 10.91 51.17; 48.45 2.72 8.25 0.43 6.1
Group_I_RNA 3IIN 182!B:202!C G:A S [tSH][XI] 9.98 90.78; 3.38 87.4 137.86 0.45 9.86
Group_I_RNA 3IIN 184!B:197!C G:C WC [cWW][XIX] 10.85 49.39; 49.95 0.56 -7.21 0.74 21.35
Group_I_RNA 3IIN 185!B:196!C U:A WC [cWW][XX] 10.49 59.64; 51.65 7.99 -9.06 0.0 11.99
Group_I_RNA 3IIN 186!B:195!C G:C WC [cWW][XIX] 10.93 60.64; 53.08 7.55 -1.49 0.23 17.41
Group_I_RNA 3IIN 187!B:194!C G:C WC [cWW][XIX] 10.46 49.42; 57.89 8.47 0.7 0.11 12.56
Group_I_RNA 3IIN 188!B:193!C C:G WC [cWW][XIX] 10.51 59.42; 48.04 11.38 6.62 0.03 10.82
Group_I_RNA 3IIN 189!B:192!C G:A S [tSH][XI] 9.38 95.59; 14.12 81.46 -72.31 0.83 21.54
Group_I_RNA 3IIN 189!B:191!C G:A S(sb:O2*-N7) [---][-] 7.76 83.74; 28.06 55.68 -168.96 2.22 32.12