| RNA | PDB | Position | bp | bpC; LG [LW][Sanger] | dCC | <X ; <Y | |<X - <Y| | Torsion | Z-Diff | Buckle |
| Riboswitch | 3IQR | 1!A:93!A | G:C | WC [cWW][XIX] | 10.79 | 50.48; 52.58 | 2.09 | -0.43 | 0.08 | 3.89 |
| Riboswitch | 3IQR | 2!A:92!A | G:C | WC [cWW][XIX] | 10.66 | 52.94; 55.81 | 2.87 | -12.2 | 0.05 | 15.78 |
| Riboswitch | 3IQR | 3!A:91!A | C:G | WC [cWW][XIX] | 10.45 | 54.58; 56.03 | 1.45 | -8.69 | 0.52 | 20.06 |
| Riboswitch | 3IQR | 4!A:90!A | U:A | WC [cWW][XX] | 10.34 | 57.2; 58.53 | 1.34 | -11.93 | 0.59 | 21.44 |
| Riboswitch | 3IQR | 5!A:89!A | U:G | Wb [cWW][XXVIII] | 10.08 | 69.42; 47.67 | 21.75 | -11.64 | 0.4 | 10.97 |
| Riboswitch | 3IQR | 6!A:88!A | A:U | WC [cWW][XX] | 10.2 | 58.24; 58.18 | 0.05 | -5.88 | 0.17 | 13.12 |
| Riboswitch | 3IQR | 7!A:87!A | U:A | WC [cWW][XX] | 10.45 | 55.45; 58.57 | 3.12 | -4.2 | 0.31 | 11.06 |
| Riboswitch | 3IQR | 8!A:86!A | C:G | WC [cWW][XIX] | 10.73 | 54.22; 54.4 | 0.17 | 1.38 | 0.03 | 4.05 |
| Riboswitch | 3IQR | 11!A:44!A | G:C | rpS [cSS][-] | 5.63 | 101.42; 150.83 | 49.4 | -73.31 | 0.47 | 36.24 |
| Riboswitch | 3IQR | 12!A:43!A | A:G | rpS [cSS][-] | 5.41 | 147.6; 111.6 | 35.99 | -29.08 | 0.16 | 30.68 |
| Riboswitch | 3IQR | 13!A:41!A | G:C | WC [cWW][XIX] | 10.25 | 63.45; 58.36 | 5.09 | -2.17 | 0.57 | 14.16 |
| Riboswitch | 3IQR | 15!A:40!A | G:C | WC [cWW][XIX] | 10.25 | 57.28; 60.54 | 3.26 | 5.68 | 0.18 | 14.62 |
| Riboswitch | 3IQR | 16!A:39!A | G:C | WC [cWW][XIX] | 10.64 | 54.67; 56.92 | 2.26 | 1.47 | 0.28 | 16.19 |
| Riboswitch | 3IQR | 17!A:38!A | U:A | WC [cWW][XX] | 10.12 | 60.02; 58.15 | 1.87 | 1.26 | 0.1 | 11.45 |
| Riboswitch | 3IQR | 18!A:37!A | G:A | S [tSH][XI] | 9.45 | 98.84; 12.7 | 86.15 | 5.18 | 0.05 | 10.25 |
| Riboswitch | 3IQR | 19!A:36!A | G:A | S [tSH][XI] | 8.65 | 98.52; 7.88 | 90.64 | -70.43 | 0.0 | 22.48 |
| Riboswitch | 3IQR | 20!A:35!A | A:G | S [tSH][XI] | 9.29 | 13.55; 102.25 | 88.7 | 1.64 | 0.26 | 15.26 |
| Riboswitch | 3IQR | 20!A:32!A* | A:G | rS [tSS][-]; rS(sb:O2*-N1)_2 [---][-] | 8.54 | 58.22; 101.12 | 42.89 | 132.36 | 1.61 | 53.16 |
| Riboswitch | 3IQR | 21!A:31!A | G:C | WC [cWW][XIX] | 10.51 | 54.53; 57.53 | 3.01 | 1.45 | 0.33 | 11.5 |
| Riboswitch | 3IQR | 22!A:30!A | G:C | WC [cWW][XIX] | 10.75 | 55.88; 51.82 | 4.06 | 0.66 | 0.32 | 13.1 |
| Riboswitch | 3IQR | 23!A:62!A | G:A | fS [tSW][X] | 9.48 | 113.44; 7.95 | 105.49 | 157.85 | 0.42 | 14.14 |
| Riboswitch | 3IQR | 23!A:29!A | G:C | WC [cWW][XIX] | 10.69 | 54.96; 54.22 | 0.74 | 8.08 | 0.25 | 13.02 |
| Riboswitch | 3IQR | 24!A:85!A | A:A | pfS [cSW][-] | 9.71 | 29.07; 112.49 | 83.42 | -53.43 | 2.14 | 40.95 |
| Riboswitch | 3IQR | 25!A:68!A | C:G | WC [cWW][XIX] | 10.41 | 53.22; 56.84 | 3.62 | -32.66 | 0.64 | 43.18 |
| Riboswitch | 3IQR | 25!A:67!A | C:U | WC_mo [cWW][XVIII] | 11.98 | 34.23; 43.04 | 8.82 | -4.61 | 2.08 | 56.5 |
| Riboswitch | 3IQR | 26!A:67!A | U:U | Wb [cWW][XVI] | 8.69 | 45.88; 72.56 | 26.69 | -22.6 | 0.26 | 30.91 |
| Riboswitch | 3IQR | 27!A:66!A | G:C | WC [cWW][XIX] | 10.71 | 52.34; 54.22 | 1.89 | -10.86 | 0.01 | 14.84 |
| Riboswitch | 3IQR | 28!A:65!A | G:C | WC [cWW][XIX] | 10.74 | 51.4; 53.87 | 2.47 | -8.32 | 0.31 | 22.49 |
| Riboswitch | 3IQR | 30!A:61!A | C:A | pfS [cSW][-] | 9.65 | 120.06; 33.09 | 86.96 | -26.37 | 1.05 | 19.2 |
| Riboswitch | 3IQR | 42!A:60!A | G:C | WC [cWW][XIX] | 10.53 | 54.87; 56.5 | 1.62 | -3.27 | 0.12 | 7.44 |
| Riboswitch | 3IQR | 43!A:59!A | G:C | WC [cWW][XIX] | 10.31 | 58.6; 58.78 | 0.18 | -12.89 | 0.23 | 27.2 |
| Riboswitch | 3IQR | 44!A:58!A | C:G | WC [cWW][XIX] | 10.83 | 53.27; 51.18 | 2.08 | -16.33 | 0.53 | 25.65 |
| Riboswitch | 3IQR | 46!A:47!A | A:C | pS* [cHS][-] | 6.55 | 160.75; 35.68 | 125.07 | 3.0 | 0.97 | 9.98 |
| Riboswitch | 3IQR | 47!A:57!A | C:U | WC [cWW][XVIII] | 8.46 | 54.25; 65.4 | 11.15 | -18.58 | 2.44 | 10.05 |
| Riboswitch | 3IQR | 47!A:56!A | C:G | WC [cWW][XIX] | 11.07 | 50.38; 48.22 | 2.16 | 5.62 | 0.41 | 17.03 |
| Riboswitch | 3IQR | 48!A:55!A | C:G | WC [cWW][XIX] | 10.49 | 56.56; 55.04 | 1.52 | -3.79 | 0.11 | 13.58 |
| Riboswitch | 3IQR | 49!A:54!A | A:U | WC [cWW][XX] | 10.01 | 60.34; 62.77 | 2.44 | 8.92 | 0.35 | 5.75 |
| Riboswitch | 3IQR | 50!A:53!A | G:A | S [tSH][XI] | 9.42 | 93.8; 8.12 | 85.68 | -91.95 | 0.42 | 21.02 |
| Riboswitch | 3IQR | 50!A:52!A | G:A | S(sb:O2*-N7) [---][-] | 7.08 | 84.89; 32.86 | 52.02 | -170.5 | 2.53 | 30.0 |
| Riboswitch | 3IQR | 56!A:90!A | G:A | rpS*(bp:N2-O1P) [---][-] | 12.14 | 84.48; 100.96 | 16.48 | 106.18 | 0.57 | 72.63 |
| Riboswitch | 3IQR | 64!A:85!A | U:A | WC [cWW][XX] | 10.42 | 57.9; 56.02 | 1.88 | -10.45 | 0.1 | 13.48 |
| Riboswitch | 3IQR | 69!A:82!A | C:G | WC [cWW][XIX] | 10.4 | 56.5; 56.2 | 0.29 | -4.01 | 0.21 | 17.28 |
| Riboswitch | 3IQR | 70!A:81!A | A:U | WC [cWW][XX] | 10.57 | 53.66; 57.11 | 3.45 | -11.98 | 0.32 | 20.79 |
| Riboswitch | 3IQR | 71!A:80!A | G:U | Wb [cWW][XXVIII] | 10.04 | 44.16; 69.79 | 25.63 | -5.52 | 0.05 | 4.18 |
| Riboswitch | 3IQR | 72!A:79!A | C:G | WC [cWW][XIX] | 10.66 | 53.26; 57.26 | 4.0 | -5.56 | 0.09 | 14.1 |
| Riboswitch | 3IQR | 73!A:78!A | G:C | WC [cWW][XIX] | 10.72 | 52.43; 56.59 | 4.16 | 1.72 | 0.1 | 1.8 |
| Riboswitch | 3IQR | 74!A:77!A | G:A | S [tSH][XI] | 9.24 | 91.28; 14.15 | 77.13 | -102.61 | 0.96 | 14.41 |
| Riboswitch | 3IQR | 74!A:76!A | G:A | S(sb:O2*-N7) [---][-] | 7.62 | 83.82; 34.35 | 49.46 | -165.2 | 2.38 | 27.67 |