Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IVK BPC Identified: 116 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Ribozyme 3IVK -7!M:19!M U:A WC [cWW][XX] 10.45 55.75; 57.04 1.29 0.83 0.07 2.47
Ribozyme 3IVK -6!M:22!M C:A fS(sb:O2*-N1)_1 [tSS][-] 8.49 86.83; 59.32 27.51 147.86 1.57 45.26
Ribozyme 3IVK -6!M:18!M C:G WC [cWW][XIX] 10.66 54.87; 52.27 2.6 -11.55 0.18 14.45
Ribozyme 3IVK -5!M:17!M C:G WC [cWW][XIX] 10.57 55.69; 50.65 5.04 -6.36 0.25 12.57
Ribozyme 3IVK -3!M:27!M G:A fS(sb:O2*-N1)_1 [---][-] 9.07 104.35; 53.55 50.8 162.4 2.46 3.51
Ribozyme 3IVK -4!M:16!M A:U WC [cWW][XX] 10.2 61.09; 61.75 0.66 -7.81 0.07 11.44
Ribozyme 3IVK -3!M:26!M G:A fS [tSW][X] 9.35 118.75; 11.36 107.39 144.97 0.78 20.92
Ribozyme 3IVK -3!M:15!M G:C WC [cWW][XIX] 10.62 54.64; 55.71 1.07 -10.58 0.02 17.12
Ribozyme 3IVK -2!M:14!M U:A WC [cWW][XX] 10.2 59.5; 56.83 2.67 -7.32 0.16 10.41
Ribozyme 3IVK -1!M:13!M A:U WC [cWW][XX] 10.09 56.4; 59.17 2.77 -4.33 0.01 7.24
Ribozyme 3IVK 1!M:12!M G:C WC [cWW][XIX] 10.66 55.35; 56.25 0.9 -9.64 0.16 18.61
Ribozyme 3IVK 2!M:11!M G:A S [tSH][XI] 8.94 102.37; 4.41 97.97 13.74 0.22 14.91
Ribozyme 3IVK 6!M:119!M A:U WC [cWW][XX] 10.08 56.05; 61.3 5.25 -9.21 0.08 11.02
Ribozyme 3IVK 7!M:118!M C:G WC [cWW][XIX] 10.54 57.73; 51.85 5.88 -12.77 0.26 14.67
Ribozyme 3IVK 8!M:117!M U:A WC [cWW][XX] 10.88 51.89; 49.17 2.72 -9.36 0.0 12.89
Ribozyme 3IVK 9!M:116!M A:U WC [cWW][XX] 10.86 54.45; 51.33 3.12 -4.28 0.31 11.5
Ribozyme 3IVK 10!M:115!M U:A WC [cWW][XX] 10.35 56.68; 49.17 7.5 -1.29 0.14 10.65
Ribozyme 3IVK 16!M:25!M U:A pfS [cSW][-] 9.11 128.22; 35.09 93.13 -36.48 0.6 32.0
Ribozyme 3IVK 29!M:72!M A:G rS [tSS][-] 8.34 47.37; 99.48 52.11 -169.8 0.2 36.46
Ribozyme 3IVK 31!M:84!M A:U pfS [cSW][-] 9.44 34.01; 120.64 86.63 -29.62 1.24 25.13
Ribozyme 3IVK 32!M:74!M A:G fS [tSW][X] 9.38 4.88; 117.16 112.28 164.13 1.08 22.62
Ribozyme 3IVK 35!M:81!M C:G WC [cWW][XIX] 10.46 60.11; 58.69 1.42 -3.43 0.37 3.48
Ribozyme 3IVK 36!M:80!M U:A WC [cWW][XX] 10.37 66.94; 55.97 10.97 -3.85 0.25 8.51
Ribozyme 3IVK 37!M:79!M G:C WC [cWW][XIX] 10.56 62.55; 57.05 5.5 0.89 0.11 7.32
Ribozyme 3IVK 38!M:78!M C:G WC [cWW][XIX] 10.64 56.65; 50.57 6.08 -3.84 0.07 8.75
Ribozyme 3IVK 39!M:77!M C:G WC [cWW][XIX] 10.59 59.1; 52.67 6.43 -2.83 0.0 6.91
Ribozyme 3IVK 40!M:44!M C:G WC [cWW][XIX] 10.62 56.27; 52.96 3.3 -1.18 0.12 2.97
Ribozyme 3IVK 41!M:43!M G:A S(sb:O2*-N7) [---][-] 7.46 83.16; 35.24 47.92 -177.07 2.31 23.84
Ribozyme 3IVK 46!M:113!M G:C Wb* [---][-] 10.82 69.17; 54.53 14.64 -20.6 0.13 24.44
Ribozyme 3IVK 48!M:112!M U:A WC [cWW][XX] 10.48 55.6; 60.89 5.3 -10.22 0.05 13.8
Ribozyme 3IVK 49!M:111!M U:A WC [cWW][XX] 10.82 53.61; 58.25 4.63 -0.62 0.09 3.4
Ribozyme 3IVK 50!M:110!M G:C WC [cWW][XIX] 10.32 57.13; 58.8 1.67 5.75 0.37 29.62
Ribozyme 3IVK 51!M:109!M A:U WC [cWW][XX] 10.7 52.51; 59.76 7.25 2.46 0.31 2.86
Ribozyme 3IVK 52!M:108!M G:C WC [cWW][XIX] 10.74 52.73; 56.38 3.64 -4.33 0.34 11.43
Ribozyme 3IVK 53!M:107!M A:U WC [cWW][XX] 10.36 58.48; 55.87 2.61 0.69 0.01 7.23
Ribozyme 3IVK 54!M:106!M A:U WC [cWW][XX] 9.74 60.58; 66.11 5.53 -9.72 0.15 11.21
Ribozyme 3IVK 55!M:69!M C:G WC [cWW][XIX] 10.76 51.18; 51.35 0.17 -8.05 0.28 13.52
Ribozyme 3IVK 56!M:68!M A:U WC [cWW][XX] 10.34 56.16; 60.36 4.2 -16.34 0.2 17.71
Ribozyme 3IVK 57!M:67!M U:A WC [cWW][XX] 10.56 55.81; 58.2 2.39 -12.79 0.09 17.02
Ribozyme 3IVK 58!M:66!M C:G WC [cWW][XIX] 10.58 55.8; 54.35 1.45 -8.28 0.09 11.09
Ribozyme 3IVK 59!M:65!M G:C WC [cWW][XIX] 10.7 54.13; 54.33 0.2 -11.1 0.67 23.97
Ribozyme 3IVK 61!M:64!M A:A fS [tSW][-] 9.94 105.33; 10.39 94.93 107.02 1.19 41.38
Ribozyme 3IVK 68!M:70!M U:C pfS [cSW][-] 8.05 135.21; 32.2 103.01 -39.45 2.21 66.9
Ribozyme 3IVK 71!M:105!M A:G rpS [cSS][-] 7.36 116.32; 108.46 7.86 -51.3 0.13 34.62
Ribozyme 3IVK 71!M:86!M A:C fS(sb:O2*-N1)_1 [tSS][-] 8.67 52.43; 94.69 42.26 134.7 1.25 43.81
Ribozyme 3IVK 72!M:85!M G:C WC [cWW][XIX] 10.4 57.66; 51.13 6.53 -5.45 0.02 14.31
Ribozyme 3IVK 73!M:84!M A:U WC [cWW][XX] 10.09 62.86; 55.12 7.74 -3.56 0.31 11.5
Ribozyme 3IVK 74!M:83!M G:C WC [cWW][XIX] 10.74 55.67; 54.57 1.1 -3.25 0.16 2.94
Ribozyme 3IVK 75!M:82!M G:C WC [cWW][XIX] 10.49 55.5; 52.45 3.05 2.57 0.62 16.92
Ribozyme 3IVK 86!M:105!M C:G WC [cWW][XIX] 10.62 51.34; 55.2 3.86 -7.75 0.11 10.95
Ribozyme 3IVK 87!M:104!M G:C WC [cWW][XIX] 10.48 52.88; 54.07 1.19 -17.61 0.29 35.93
Ribozyme 3IVK 88!M:103!M G:A WC [cWW][VIII] 12.87 48.28; 43.53 4.75 -11.06 0.59 22.78
Ribozyme 3IVK 89!M:102!M U:A WC [cWW][XX] 10.59 55.27; 52.66 2.62 -12.71 0.01 17.31
Ribozyme 3IVK 90!M:101!M G:C WC [cWW][XIX] 10.52 55.23; 55.94 0.71 -5.42 0.2 9.82
Ribozyme 3IVK 90!M:97!M G:A rH*_1 [tHW][-] 12.02 17.43; 25.09 7.66 122.77 0.88 21.23
Ribozyme 3IVK 91!M:100!M G:C WC [cWW][XIX] 10.54 55.81; 54.75 1.06 -1.33 0.04 12.8
Ribozyme 3IVK 92!M:99!M G:C WC [cWW][XIX] 10.71 54.61; 57.14 2.53 -4.11 0.67 18.62
Ribozyme 3IVK 93!M:98!M U:A S [tSH][-] 10.69 82.78; 19.23 63.55 15.62 0.75 18.44
Ribozyme 3IVK -7!C:19!C U:A WC [cWW][XX] 10.44 55.94; 57.17 1.22 1.16 0.14 1.97
Ribozyme 3IVK -6!C:22!C C:A fS(sb:O2*-N1)_1 [tSS][-] 8.48 87.02; 59.26 27.75 147.42 1.51 45.37
Ribozyme 3IVK -6!C:18!C C:G WC [cWW][XIX] 10.66 55.06; 52.15 2.91 -11.62 0.18 13.94
Ribozyme 3IVK -5!C:17!C C:G WC [cWW][XIX] 10.56 56.18; 50.97 5.21 -6.33 0.28 12.4
Ribozyme 3IVK -4!C:16!C A:U WC [cWW][XX] 10.2 61.27; 61.98 0.72 -7.87 0.08 11.88
Ribozyme 3IVK -3!C:27!C G:A fS(sb:O2*-N1)_1 [---][-] 9.06 104.07; 53.79 50.29 162.01 2.42 3.49
Ribozyme 3IVK -3!C:26!C G:A fS [tSW][X] 9.36 118.46; 11.4 107.07 144.2 0.8 20.83
Ribozyme 3IVK -3!C:15!C G:C WC [cWW][XIX] 10.62 54.43; 55.71 1.28 -10.61 0.01 17.23
Ribozyme 3IVK -2!C:14!C U:A WC [cWW][XX] 10.2 59.53; 56.68 2.86 -7.46 0.14 10.72
Ribozyme 3IVK -1!C:13!C A:U WC [cWW][XX] 10.09 56.45; 59.27 2.82 -5.06 0.06 7.74
Ribozyme 3IVK 1!C:12!C G:C WC [cWW][XIX] 10.66 55.05; 56.22 1.18 -9.59 0.14 19.15
Ribozyme 3IVK 2!C:11!C G:A S [tSH][XI] 8.94 102.51; 4.66 97.85 15.88 0.27 14.93
Ribozyme 3IVK 6!C:119!C A:U WC [cWW][XX] 10.08 56.11; 61.33 5.22 -9.26 0.07 11.18
Ribozyme 3IVK 7!C:118!C C:G WC [cWW][XIX] 10.53 57.94; 51.99 5.95 -12.64 0.27 14.79
Ribozyme 3IVK 8!C:117!C U:A WC [cWW][XX] 10.88 51.84; 49.21 2.63 -9.52 0.0 12.9
Ribozyme 3IVK 9!C:116!C A:U WC [cWW][XX] 10.86 54.38; 51.22 3.16 -4.28 0.3 11.18
Ribozyme 3IVK 10!C:115!C U:A WC [cWW][XX] 10.35 56.96; 49.11 7.86 -1.21 0.11 10.52
Ribozyme 3IVK 16!C:25!C U:A pfS [cSW][-] 9.11 128.52; 35.01 93.51 -37.53 0.63 32.51
Ribozyme 3IVK 29!C:72!C A:G rS [tSS][-] 8.34 47.12; 99.61 52.49 -169.13 0.22 37.4
Ribozyme 3IVK 31!C:84!C A:U pfS [cSW][-] 9.44 34.09; 120.63 86.54 -29.28 1.22 25.09
Ribozyme 3IVK 32!C:74!C A:G fS [tSW][X] 9.38 5.09; 117.23 112.14 162.1 1.05 22.2
Ribozyme 3IVK 35!C:81!C C:G WC [cWW][XIX] 10.47 60.18; 58.77 1.41 -3.37 0.39 3.21
Ribozyme 3IVK 36!C:80!C U:A WC [cWW][XX] 10.36 67.02; 56.01 11.01 -4.03 0.3 7.91
Ribozyme 3IVK 37!C:79!C G:C WC [cWW][XIX] 10.55 62.72; 56.92 5.8 0.84 0.16 7.67
Ribozyme 3IVK 38!C:78!C C:G WC [cWW][XIX] 10.64 56.63; 50.48 6.15 -3.42 0.12 8.07
Ribozyme 3IVK 39!C:77!C C:G WC [cWW][XIX] 10.59 58.95; 52.65 6.3 -2.83 0.01 6.95
Ribozyme 3IVK 40!C:44!C C:G WC [cWW][XIX] 10.61 56.13; 53.0 3.13 -0.6 0.12 3.27
Ribozyme 3IVK 41!C:43!C G:A S(sb:O2*-N7) [---][-] 7.47 82.96; 35.01 47.95 -177.31 2.33 23.69
Ribozyme 3IVK 46!C:113!C G:C Wb* [---][-] 10.82 69.04; 54.55 14.48 -20.34 0.05 23.97
Ribozyme 3IVK 48!C:112!C U:A WC [cWW][XX] 10.47 55.77; 61.06 5.29 -10.4 0.06 13.93
Ribozyme 3IVK 49!C:111!C U:A WC [cWW][XX] 10.82 53.44; 58.26 4.82 -0.6 0.03 3.7
Ribozyme 3IVK 50!C:110!C G:C WC [cWW][XIX] 10.33 57.18; 58.83 1.65 5.57 0.37 29.3
Ribozyme 3IVK 51!C:109!C A:U WC [cWW][XX] 10.7 52.65; 59.69 7.05 2.5 0.33 2.51
Ribozyme 3IVK 52!C:108!C G:C WC [cWW][XIX] 10.74 52.65; 56.35 3.7 -4.08 0.36 11.2
Ribozyme 3IVK 53!C:107!C A:U WC [cWW][XX] 10.36 58.56; 55.89 2.67 0.12 0.01 6.71
Ribozyme 3IVK 54!C:106!C A:U WC [cWW][XX] 9.74 60.4; 66.04 5.65 -9.93 0.13 11.44
Ribozyme 3IVK 55!C:69!C C:G WC [cWW][XIX] 10.77 51.2; 51.3 0.09 -7.35 0.31 13.32
Ribozyme 3IVK 56!C:68!C A:U WC [cWW][XX] 10.33 55.98; 60.68 4.71 -15.54 0.14 17.94
Ribozyme 3IVK 57!C:67!C U:A WC [cWW][XX] 10.55 55.99; 58.6 2.62 -12.71 0.02 16.82
Ribozyme 3IVK 58!C:66!C C:G WC [cWW][XIX] 10.57 55.97; 54.32 1.65 -8.57 0.1 11.63
Ribozyme 3IVK 59!C:65!C G:C WC [cWW][XIX] 10.69 54.26; 54.18 0.08 -11.04 0.69 23.48
Ribozyme 3IVK 61!C:64!C A:A fS [tSW][-] 9.93 105.5; 10.72 94.78 105.05 1.13 41.59
Ribozyme 3IVK 68!C:70!C U:C pfS [cSW][-] 8.05 135.5; 32.0 103.5 -39.79 2.29 67.84
Ribozyme 3IVK 71!C:105!C A:G rpS [cSS][-] 7.36 116.25; 108.49 7.76 -51.26 0.18 34.48
Ribozyme 3IVK 71!C:86!C A:C fS(sb:O2*-N1)_1 [tSS][-] 8.68 52.31; 94.49 42.19 134.82 1.19 43.64
Ribozyme 3IVK 72!C:85!C G:C WC [cWW][XIX] 10.4 57.89; 51.08 6.82 -5.63 0.01 14.63
Ribozyme 3IVK 73!C:84!C A:U WC [cWW][XX] 10.09 63.05; 55.03 8.03 -3.15 0.33 11.47
Ribozyme 3IVK 74!C:83!C G:C WC [cWW][XIX] 10.74 55.69; 54.22 1.47 -3.09 0.16 2.93
Ribozyme 3IVK 75!C:82!C G:C WC [cWW][XIX] 10.49 55.47; 52.75 2.72 2.56 0.61 16.97
Ribozyme 3IVK 86!C:105!C C:G WC [cWW][XIX] 10.62 51.16; 55.22 4.06 -7.69 0.12 11.09
Ribozyme 3IVK 87!C:104!C G:C WC [cWW][XIX] 10.47 52.85; 54.03 1.18 -17.85 0.27 33.65
Ribozyme 3IVK 88!C:103!C G:A WC [cWW][VIII] 12.86 48.18; 43.44 4.73 -10.65 0.55 21.68
Ribozyme 3IVK 89!C:102!C U:A WC [cWW][XX] 10.59 54.94; 52.63 2.3 -12.34 0.05 17.17
Ribozyme 3IVK 90!C:101!C G:C WC [cWW][XIX] 10.53 55.1; 55.65 0.55 -5.58 0.18 9.84
Ribozyme 3IVK 90!C:97!C G:A rH*_1 [tHW][-] 12.01 17.36; 24.88 7.52 123.19 0.89 20.88
Ribozyme 3IVK 91!C:100!C G:C WC [cWW][XIX] 10.53 55.68; 54.72 0.96 -0.99 0.03 12.94
Ribozyme 3IVK 92!C:99!C G:C WC [cWW][XIX] 10.72 54.94; 57.02 2.08 -4.28 0.67 19.62
Ribozyme 3IVK 93!C:98!C U:A S [tSH][-] 10.68 82.93; 18.94 63.98 16.43 0.75 19.36