Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IVN BPC Identified: 72 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3IVN 5!A:73!A G:C WC [cWW][XIX] 10.55 51.14; 59.4 8.26 -9.24 0.19 17.15
Riboswitch 3IVN 6!A:72!A G:U Wb [cWW][XXVIII] 10.34 42.79; 69.52 26.72 -9.51 0.18 14.09
Riboswitch 3IVN 7!A:71!A C:G WC [cWW][XIX] 10.87 51.12; 54.23 3.11 -9.12 0.06 12.39
Riboswitch 3IVN 8!A:70!A C:G WC [cWW][XIX] 10.75 46.54; 58.14 11.6 -6.4 0.3 12.02
Riboswitch 3IVN 9!A:69!A A:U WC [cWW][XX] 10.3 60.91; 55.08 5.82 -2.55 0.14 2.53
Riboswitch 3IVN 10!A:68!A G:C WC [cWW][XIX] 10.53 56.84; 52.25 4.59 -8.89 0.29 19.28
Riboswitch 3IVN 11!A:67!A U:A WC [cWW][XX] 10.75 55.27; 52.65 2.61 -15.8 0.28 24.12
Riboswitch 3IVN 12!A:66!A A:U WC [cWW][XX] 10.85 58.33; 50.57 7.76 -8.53 0.42 7.01
Riboswitch 3IVN 13!A:43!A U:A WC [cWW][XX] 10.32 55.83; 61.3 5.47 5.12 0.64 15.72
Riboswitch 3IVN 14!A:37!A A:G fS [tSW][X] 9.42 4.65; 116.86 112.21 62.26 0.14 4.35
Riboswitch 3IVN 15!A:44!A A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.52 142.19; 135.58 6.61 -122.73 2.04 37.94
Riboswitch 3IVN 16!A:44!A C:C H_2 [---][-] 8.44 31.95; 104.79 72.84 33.17 2.15 13.09
Riboswitch 3IVN 16!A:36!A C:G WC [cWW][XIX] 10.62 55.1; 57.23 2.14 -0.9 0.68 15.21
Riboswitch 3IVN 17!A:35!A C:G WC [cWW][XIX] 10.38 59.06; 58.29 0.77 -6.47 0.39 14.23
Riboswitch 3IVN 18!A:34!A U:A WC [cWW][XX] 10.33 60.49; 55.29 5.19 -6.38 0.26 11.44
Riboswitch 3IVN 19!A:33!A C:G WC [cWW][XIX] 10.32 60.62; 52.44 8.18 -5.06 0.14 6.21
Riboswitch 3IVN 20!A:32!A A:U WC [cWW][XX] 10.85 55.76; 51.87 3.89 -5.61 0.12 9.25
Riboswitch 3IVN 21!A:31!A A:U WC [cWW][XX] 10.6 52.17; 57.85 5.68 -4.35 0.28 13.23
Riboswitch 3IVN 22!A:30!A U:U Wb [cWW][XVI] 8.45 76.66; 47.97 28.69 -11.41 0.04 18.78
Riboswitch 3IVN 24!A:57!A A:A rH [tWH][V] 12.76 15.1; 19.96 4.85 177.27 0.42 22.16
Riboswitch 3IVN 25!A:56!A U:A rH_1 [tWH][XXIV] 10.22 29.38; 13.56 15.82 -177.76 0.05 14.91
Riboswitch 3IVN 25!A:28!A U:G rpS [cSS][-] 4.21 123.4; 110.91 12.49 110.17 0.26 38.87
Riboswitch 3IVN 26!A:55!A A:A rS* [tHH][-] 12.73 22.47; 11.66 10.81 29.86 0.26 6.0
Riboswitch 3IVN 28!A:52!A G:C WC [cWW][XIX] 10.85 52.36; 52.08 0.28 -16.74 0.08 20.14
Riboswitch 3IVN 29!A:57!A G:A fS [tSW][X] 9.88 120.62; 14.0 106.63 -117.92 0.74 12.8
Riboswitch 3IVN 29!A:51!A G:C WC [cWW][XIX] 10.78 56.39; 54.19 2.2 -11.55 0.15 15.17
Riboswitch 3IVN 37!A:44!A G:C WC [cWW][XIX] 10.92 50.06; 58.31 8.25 9.26 0.31 16.54
Riboswitch 3IVN 39!A:65!A G:C WC [cWW][XIX] 10.74 56.15; 49.98 6.17 -27.3 1.39 49.37
Riboswitch 3IVN 39!A:42!A G:U fS*_1 [tWS][-] 7.83 105.15; 21.4 83.75 122.08 0.61 31.95
Riboswitch 3IVN 41!A:66!A C:U pfS [cSW][-] 7.73 35.51; 135.05 99.55 -20.16 0.18 14.56
Riboswitch 3IVN 45!A:63!A C:G WC [cWW][XIX] 10.71 56.11; 52.39 3.72 -2.48 0.01 12.21
Riboswitch 3IVN 46!A:62!A A:U WC [cWW][XX] 10.63 56.02; 55.12 0.9 -6.25 0.42 14.35
Riboswitch 3IVN 47!A:61!A G:C WC [cWW][XIX] 10.78 53.74; 52.07 1.67 -10.66 0.02 15.72
Riboswitch 3IVN 48!A:60!A G:C WC [cWW][XIX] 11.0 51.8; 57.72 5.92 -8.83 0.06 13.03
Riboswitch 3IVN 49!A:59!A A:U WC [cWW][XX] 10.67 49.1; 52.49 3.39 0.82 0.06 1.76
Riboswitch 3IVN 53!A:54!A G:U pS* [cHS][-] 6.11 141.4; 51.59 89.81 28.62 1.01 21.24
Riboswitch 3IVN 5!B:73!B G:C WC [cWW][XIX] 10.76 56.72; 52.09 4.63 -0.67 0.31 16.9
Riboswitch 3IVN 6!B:72!B G:U Wb [cWW][XXVIII] 10.3 43.76; 68.2 24.44 -9.13 0.09 14.42
Riboswitch 3IVN 7!B:71!B C:G WC [cWW][XIX] 10.66 54.74; 48.38 6.36 -12.6 0.04 23.13
Riboswitch 3IVN 8!B:70!B C:G WC [cWW][XIX] 10.83 52.36; 51.23 1.13 -5.13 0.26 9.59
Riboswitch 3IVN 9!B:69!B A:U WC [cWW][XX] 10.38 56.64; 57.78 1.15 -10.69 0.23 12.91
Riboswitch 3IVN 10!B:68!B G:C WC [cWW][XIX] 10.56 54.75; 53.59 1.15 -15.15 0.67 25.71
Riboswitch 3IVN 11!B:67!B U:A WC [cWW][XX] 10.46 59.76; 49.77 10.0 -14.39 0.5 24.24
Riboswitch 3IVN 12!B:66!B A:U WC [cWW][XX] 10.65 57.3; 53.51 3.78 -0.44 0.0 0.67
Riboswitch 3IVN 13!B:43!B U:A WC [cWW][XX] 10.51 54.51; 60.76 6.24 1.41 0.3 13.42
Riboswitch 3IVN 14!B:37!B A:G fS [tSW][X] 9.37 4.87; 119.11 114.24 73.64 0.3 3.76
Riboswitch 3IVN 15!B:44!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 5.33 143.77; 133.97 9.8 -124.84 1.72 36.33
Riboswitch 3IVN 16!B:44!B C:C H_2 [---][-] 8.33 31.69; 103.95 72.27 35.65 2.7 15.74
Riboswitch 3IVN 16!B:36!B C:G WC [cWW][XIX] 10.94 53.88; 55.08 1.21 -2.29 0.66 14.51
Riboswitch 3IVN 17!B:35!B C:G WC [cWW][XIX] 10.78 53.4; 52.86 0.54 -2.39 0.11 14.63
Riboswitch 3IVN 18!B:34!B U:A WC [cWW][XX] 10.67 57.47; 51.37 6.1 -2.73 0.1 5.89
Riboswitch 3IVN 19!B:33!B C:G WC [cWW][XIX] 10.35 61.15; 51.26 9.89 -7.48 0.01 8.71
Riboswitch 3IVN 20!B:32!B A:U WC [cWW][XX] 10.63 56.98; 52.97 4.01 -9.0 0.08 9.5
Riboswitch 3IVN 21!B:31!B A:U WC [cWW][XX] 10.43 52.59; 56.74 4.16 -5.39 0.32 14.49
Riboswitch 3IVN 22!B:30!B U:U Wb [cWW][XVI] 8.84 78.98; 44.27 34.71 -13.99 0.85 22.35
Riboswitch 3IVN 24!B:28!B A:G pfS(sb:O2*-N3) [---][-] 6.92 87.97; 137.32 49.34 -13.74 1.76 17.83
Riboswitch 3IVN 25!B:56!B U:A rH_1 [tWH][XXIV] 10.4 30.25; 13.8 16.45 -168.29 0.09 5.98
Riboswitch 3IVN 25!B:28!B U:G rpS [cSS][-] 4.48 130.79; 104.04 26.76 96.58 0.02 29.73
Riboswitch 3IVN 28!B:52!B G:C WC [cWW][XIX] 11.11 44.5; 45.91 1.41 -25.64 0.82 19.1
Riboswitch 3IVN 29!B:58!B G:A fS(sb:O2*-N6) [---][-] 9.42 100.6; 34.31 66.29 147.91 1.52 15.47
Riboswitch 3IVN 29!B:57!B G:A fS [tSW][X] 10.03 120.57; 11.81 108.76 -162.1 0.17 9.25
Riboswitch 3IVN 29!B:51!B* G:C WC [cWW][XIX]; Wb* [---][-] 11.04 58.24; 44.38 13.86 -20.71 0.09 20.3
Riboswitch 3IVN 37!B:44!B G:C WC [cWW][XIX] 10.76 53.28; 56.38 3.1 11.84 0.15 17.43
Riboswitch 3IVN 39!B:65!B G:C WC [cWW][XIX] 10.99 52.21; 49.97 2.24 -24.78 1.31 43.8
Riboswitch 3IVN 41!B:66!B C:U pfS [cSW][-] 7.94 35.22; 137.46 102.24 -22.43 0.65 20.75
Riboswitch 3IVN 45!B:63!B C:G WC [cWW][XIX] 10.68 53.93; 55.78 1.85 -0.53 0.46 7.13
Riboswitch 3IVN 46!B:62!B A:U WC [cWW][XX] 10.43 55.65; 57.34 1.69 -7.43 0.02 13.59
Riboswitch 3IVN 47!B:61!B G:C WC [cWW][XIX] 10.55 55.74; 54.07 1.67 -8.5 0.0 10.44
Riboswitch 3IVN 48!B:60!B G:C WC [cWW][XIX] 10.53 58.51; 56.71 1.8 -7.64 0.18 9.0
Riboswitch 3IVN 49!B:59!B A:U WC [cWW][XX] 10.52 58.15; 56.47 1.68 -3.8 0.17 8.64
Riboswitch 3IVN 52!B:56!B C:A pfS [cSW][-] 9.08 130.85; 45.74 85.11 14.73 0.39 12.5
Riboswitch 3IVN 53!B:54!B G:U pS* [cHS][-] 6.17 143.94; 53.88 90.06 14.75 0.9 19.31