Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IYQ BPC Identified: 104 Ambiguities: 3
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tmRNA 3IYQ 1!A:345!A G:C WC [cWW][XIX] 10.77 52.43; 54.01 1.59 -14.78 0.04 16.29
tmRNA 3IYQ 2!A:344!A G:C WC [cWW][XIX] 10.86 40.8; 52.83 12.03 -21.11 0.06 30.73
tmRNA 3IYQ 2!A:341!A G:C rH_1 [tWH][-] 10.54 51.16; 25.67 25.49 57.59 0.69 65.75
tmRNA 3IYQ 3!A:343!A G:U Wb [cWW][XXVIII] 10.68 28.34; 66.31 37.97 -22.72 0.28 39.41
tmRNA 3IYQ 4!A:342!A G:C WC [cWW][XIX] 10.43 41.64; 56.83 15.19 -42.24 0.2 52.3
tmRNA 3IYQ 5!A:340!A* G:A WC [cWW][VIII]; rWb* [---][-] 12.99 46.82; 33.85 12.97 -71.34 0.79 86.9
tmRNA 3IYQ 7!A:339!A G:C WC [cWW][XIX] 10.87 52.24; 49.98 2.26 -45.42 0.36 47.61
tmRNA 3IYQ 13!A:330!A G:G pfS_2 [---][-] 8.41 81.66; 132.73 51.07 -49.42 0.68 35.01
tmRNA 3IYQ 22!A:314!A G:C srWC* [---][-] 13.17 20.42; 4.7 15.72 106.48 1.14 85.58
tmRNA 3IYQ 22!A:313!A G:C rpS* [cHH][-] 11.58 8.44; 18.5 10.07 -61.58 0.41 86.46
tmRNA 3IYQ 24!A:314!A G:C WC [cWW][XIX] 10.91 48.81; 48.42 0.39 -22.93 0.01 28.36
tmRNA 3IYQ 25!A:313!A G:C WC [cWW][XIX] 10.91 48.03; 46.46 1.57 -42.44 0.51 39.72
tmRNA 3IYQ 26!A:312!A U:A WC [cWW][XX] 10.72 52.91; 53.45 0.54 -18.14 0.78 27.75
tmRNA 3IYQ 32!A:311!A A:G pS_1 [cSH][-] 7.73 30.51; 133.89 103.37 -54.18 0.23 33.08
tmRNA 3IYQ 35!A:305!A G:C Wb* [---][-] 11.04 64.86; 48.94 15.92 -29.73 2.57 26.59
tmRNA 3IYQ 35!A:304!A G:C Wb [---][-] 10.84 44.03; 57.65 13.62 -10.01 0.86 31.91
tmRNA 3IYQ 36!A:310!A C:G fS(pb:O1P-N1) [---][-] 12.23 119.54; 64.35 55.2 -35.73 1.43 45.89
tmRNA 3IYQ 36!A:303!A C:G WC [cWW][XIX] 10.55 57.24; 48.47 8.76 -17.95 0.22 19.12
tmRNA 3IYQ 37!A:302!A G:C WC [cWW][XIX] 11.19 42.22; 42.71 0.49 -29.01 0.41 39.24
tmRNA 3IYQ 38!A:306!A U:G sWb* [---][-] 11.63 43.54; 41.29 2.25 98.89 1.3 52.3
tmRNA 3IYQ 38!A:303!A* U:G S*_1 [tHS][-]; pS* [cHS][-] 9.84 27.55; 113.22 85.66 42.47 0.22 51.36
tmRNA 3IYQ 39!A:301!A G:C WC [cWW][XIX] 11.14 45.53; 48.48 2.94 -10.93 0.33 16.24
tmRNA 3IYQ 40!A:300!A G:C WC [cWW][XIX] 10.8 49.82; 53.96 4.15 -11.8 0.21 14.63
tmRNA 3IYQ 41!A:299!A C:G WC [cWW][XIX] 10.27 66.47; 49.25 17.23 -19.12 0.29 33.8
tmRNA 3IYQ 42!A:298!A U:G Wb [cWW][XXVIII] 10.42 75.27; 48.94 26.33 -17.15 0.05 23.89
tmRNA 3IYQ 45!A:292!A G:C WC [cWW][XIX] 10.44 54.84; 55.75 0.91 -9.12 0.85 39.62
tmRNA 3IYQ 46!A:291!A C:G WC [cWW][XIX] 10.46 65.46; 55.57 9.89 -4.05 0.42 15.88
tmRNA 3IYQ 47!A:290!A G:C WC [cWW][XIX] 10.5 56.98; 54.12 2.86 3.4 0.21 32.35
tmRNA 3IYQ 48!A:289!A C:G WC [cWW][XIX] 10.82 43.1; 53.52 10.42 -28.57 0.38 35.31
tmRNA 3IYQ 49!A:67!A C:G WC [cWW][XIX] 10.62 53.94; 49.53 4.41 -4.66 0.55 32.79
tmRNA 3IYQ 50!A:66!A G:C WC [cWW][XIX] 10.95 50.05; 49.03 1.02 -15.05 0.71 30.71
tmRNA 3IYQ 51!A:65!A A:U WC [cWW][XX] 11.28 44.45; 44.83 0.38 -24.38 0.13 32.91
tmRNA 3IYQ 52!A:64!A G:C Wb [---][-] 9.92 54.45; 83.2 28.75 -5.49 0.15 18.95
tmRNA 3IYQ 53!A:61!A G:G S_2_mo [---][-] 10.31 21.45; 77.93 56.48 -166.11 0.45 8.81
tmRNA 3IYQ 53!A:54!A G:U pS* [cHS][-] 7.16 131.74; 47.33 84.41 -35.26 1.06 27.85
tmRNA 3IYQ 55!A:78!A G:C WC [cWW][XIX] 10.59 47.41; 57.83 10.42 -16.61 0.08 24.32
tmRNA 3IYQ 56!A:77!A C:G WC_Mo [cWW][XIX] 10.37 66.93; 66.48 0.45 -30.28 0.04 41.11
tmRNA 3IYQ 57!A:76!A G:C WC [cWW][XIX] 10.64 50.15; 55.04 4.9 -15.12 0.06 21.75
tmRNA 3IYQ 58!A:75!A G:C WC [cWW][XIX] 10.84 48.91; 50.38 1.47 -22.29 0.07 30.59
tmRNA 3IYQ 58!A:74!A G:C rH_2 [---][-] 13.2 22.1; 31.5 9.4 32.54 1.28 86.93
tmRNA 3IYQ 60!A:73!A U:A WC [cWW][XX] 10.59 55.2; 54.98 0.22 -8.33 0.1 26.69
tmRNA 3IYQ 100!A:103!A A:U S* [tHS][-] 9.09 114.22; 10.99 103.22 97.94 0.35 83.26
tmRNA 3IYQ 107!A:173!A C:A sWb [---][-] 11.54 61.9; 22.64 39.26 -26.65 1.16 39.75
tmRNA 3IYQ 110!A:129!A U:A WC [cWW][XX] 10.3 57.74; 59.68 1.94 0.58 0.83 20.85
tmRNA 3IYQ 111!A:128!A C:G WC [cWW][XIX] 10.83 52.55; 51.86 0.68 -11.22 0.01 12.76
tmRNA 3IYQ 112!A:127!A G:C WC_Mo [cWW][XIX] 10.55 59.16; 57.48 1.68 -36.16 0.23 44.61
tmRNA 3IYQ 113!A:126!A C:G WC [cWW][XIX] 10.44 61.99; 55.85 6.14 -25.31 0.67 35.47
tmRNA 3IYQ 114!A:125!A G:C WC [cWW][XIX] 10.66 51.26; 54.67 3.41 -19.75 0.19 28.98
tmRNA 3IYQ 115!A:124!A G:C WC [cWW][XIX] 9.85 53.33; 66.29 12.96 -8.46 0.15 44.27
tmRNA 3IYQ 117!A:118!A U:U rpS(ps:O1P-O2*) [---][-] 8.11 144.0; 77.23 66.77 29.88 0.88 46.95
tmRNA 3IYQ 132!A:168!A U:G sWb* [---][-] 12.81 14.83; 53.74 38.91 -49.43 0.46 29.65
tmRNA 3IYQ 133!A:162!A C:G rS*_2 [---][-] 13.75 17.08; 7.94 9.15 -126.74 0.82 24.09
tmRNA 3IYQ 135!A:165!A C:G pfS [---][-] 9.2 93.4; 61.2 32.2 -16.62 1.89 39.96
tmRNA 3IYQ 138!A:160!A G:C WC [cWW][XIX] 9.84 53.42; 65.4 11.98 -9.93 1.11 49.6
tmRNA 3IYQ 139!A:159!A G:C WC [cWW][XIX] 10.21 54.98; 65.92 10.94 -12.72 0.15 22.29
tmRNA 3IYQ 140!A:158!A U:A WC [cWW][XX] 11.49 41.01; 43.66 2.65 -44.78 0.09 53.98
tmRNA 3IYQ 141!A:155!A A:C rH_1 [rWH][XXV] 11.13 5.62; 41.08 35.46 -33.81 0.18 41.81
tmRNA 3IYQ 142!A:155!A G:C Wb [---][-] 10.24 48.01; 63.9 15.88 -19.36 0.62 21.2
tmRNA 3IYQ 143!A:154!A C:G WC [cWW][XIX] 10.8 51.48; 52.69 1.21 3.52 0.38 20.53
tmRNA 3IYQ 145!A:182!A C:G rpS* [cHH][-] 11.5 31.36; 9.29 22.07 -64.04 0.45 37.56
tmRNA 3IYQ 147!A:183!A G:C WC_mo [cWW][XIX] 12.15 40.7; 36.94 3.76 -28.7 1.24 63.3
tmRNA 3IYQ 148!A:182!A C:G WC [cWW][XIX] 11.06 49.79; 48.55 1.24 -19.76 0.38 31.38
tmRNA 3IYQ 149!A:182!A C:G pfS [---][-] 8.64 98.06; 53.3 44.76 -28.09 2.06 15.4
tmRNA 3IYQ 150!A:180!A G:C WC [cWW][XIX] 10.71 54.65; 53.83 0.82 -11.66 0.06 14.79
tmRNA 3IYQ 162!A:164!A G:A S [tSH][XI] 8.53 110.86; 23.09 87.77 -30.61 0.84 32.73
tmRNA 3IYQ 183!A:185!A C:A rS* [tHH][-] 10.39 34.96; 36.85 1.88 120.0 2.5 75.56
tmRNA 3IYQ 186!A:213!A G:G Wb [---][-] 13.0 53.54; 23.43 30.11 -7.93 1.3 30.42
tmRNA 3IYQ 187!A:213!A C:G WC [cWW][XIX] 10.6 56.32; 44.47 11.85 -33.97 0.92 31.55
tmRNA 3IYQ 188!A:212!A C:G WC [cWW][XIX] 11.16 48.1; 44.08 4.02 -22.13 0.01 31.21
tmRNA 3IYQ 189!A:217!A C:A rWC_Mo [---][-] 10.48 82.26; 22.92 59.34 -133.34 0.83 19.28
tmRNA 3IYQ 190!A:210!A G:C WC [cWW][XIX] 10.79 48.39; 50.97 2.59 -21.61 0.8 25.8
tmRNA 3IYQ 191!A:209!A G:C WC [cWW][XIX] 11.32 39.74; 37.95 1.79 -45.32 1.16 31.3
tmRNA 3IYQ 192!A:208!A G:C WC [cWW][XIX] 10.99 49.63; 50.27 0.64 -13.1 0.26 10.29
tmRNA 3IYQ 198!A:230!A G:C WC [cWW][XIX] 10.89 49.29; 52.33 3.04 -6.26 0.29 7.66
tmRNA 3IYQ 198!A:229!A G:G Wb [---][-] 13.46 47.93; 24.66 23.26 5.52 1.08 15.47
tmRNA 3IYQ 200!A:228!A* C:G WC [cWW][XIX]; Wb_v [---][-] 10.33 48.84; 47.35 1.49 -51.9 1.29 44.36
tmRNA 3IYQ 201!A:227!A C:G WC [cWW][XIX] 10.91 43.51; 50.26 6.76 -29.03 0.19 41.74
tmRNA 3IYQ 202!A:226!A U:G Wb_Mo [cWW][XXVIII] 9.33 98.12; 56.61 41.5 -23.15 0.73 56.52
tmRNA 3IYQ 204!A:224!A U:A WC [cWW][XX] 9.59 69.16; 65.69 3.47 -3.48 0.67 14.96
tmRNA 3IYQ 212!A:217!A G:A pfS_1 [---][-] 6.64 139.72; 79.53 60.19 -2.28 0.64 47.86
tmRNA 3IYQ 235!A:267!A U:G Wb_Mo [cWW][XXVIII] 10.02 82.19; 51.25 30.94 -39.28 2.06 30.22
tmRNA 3IYQ 235!A:266!A U:A WC [cWW][XX] 10.62 54.19; 53.13 1.06 -26.01 0.01 27.96
tmRNA 3IYQ 236!A:265!A C:G Wb [---][-] 10.36 66.41; 42.51 23.9 -54.02 1.48 48.44
tmRNA 3IYQ 236!A:264!A C:G WC_mo [cWW][XIX] 11.97 42.58; 42.05 0.53 -19.08 0.28 29.42
tmRNA 3IYQ 237!A:273!A C:G S*(pb:O1P-N2)_1 [---][-] 11.11 122.41; 70.75 51.66 -3.02 1.19 38.9
tmRNA 3IYQ 237!A:264!A C:G pfS [---][-] 9.67 86.73; 62.17 24.56 -36.37 0.38 38.63
tmRNA 3IYQ 237!A:263!A C:A Wb [cWW][-] 11.2 61.45; 40.55 20.9 -23.57 1.21 45.07
tmRNA 3IYQ 238!A:263!A U:A WC [cWW][XX] 9.36 57.24; 67.86 10.63 -33.78 2.21 71.57
tmRNA 3IYQ 239!A:262!A G:C WC [cWW][XIX] 9.97 55.4; 60.21 4.81 1.85 2.16 54.4
tmRNA 3IYQ 241!A:260!A C:G WC [cWW][XIX] 10.08 58.45; 53.14 5.31 0.0 1.44 47.64
tmRNA 3IYQ 243!A:256!A G:C WC [cWW][XIX] 10.61 44.64; 50.29 5.65 -14.1 1.92 47.05
tmRNA 3IYQ 244!A:255!A C:G WC [cWW][XIX] 11.05 51.27; 44.96 6.31 12.25 0.17 23.84
tmRNA 3IYQ 247!A:285!A G:C WC [cWW][XIX] 10.9 42.05; 53.99 11.93 -35.63 0.67 49.18
tmRNA 3IYQ 248!A:284!A U:A WC [cWW][XX] 11.41 43.24; 39.55 3.69 -37.7 0.03 55.27
tmRNA 3IYQ 249!A:283!A C:G pfS [---][-] 9.92 92.41; 55.78 36.63 -6.41 0.57 10.46
tmRNA 3IYQ 250!A:282!A C:G WC [cWW][XIX] 10.5 59.54; 52.6 6.94 3.36 0.39 7.35
tmRNA 3IYQ 251!A:281!A G:C WC [cWW][XIX] 10.84 48.29; 52.51 4.22 -9.85 0.12 20.5
tmRNA 3IYQ 252!A:280!A C:G WC [cWW][XIX] 10.49 59.69; 54.37 5.32 -7.81 0.09 17.17
tmRNA 3IYQ 253!A:279!A G:C Wb [---][-] 10.19 53.83; 77.74 23.91 -14.8 0.2 28.22
tmRNA 3IYQ 275!A:276!A G:A rS(bs:N2-O2*) [---][-] 5.43 111.24; 111.27 0.03 -97.97 1.5 71.72
tmRNA 3IYQ 322!A:338!A G:C WC [cWW][XIX] 10.78 53.18; 51.41 1.77 -18.93 0.35 23.92
tmRNA 3IYQ 324!A:336!A G:C WC_Mo [cWW][XIX] 10.52 61.79; 56.64 5.15 -38.1 0.19 42.7
tmRNA 3IYQ 325!A:335!A G:C WC [cWW][XIX] 10.9 49.96; 51.7 1.74 -6.09 0.11 11.03
tmRNA 3IYQ 326!A:334!A G:C WC [cWW][XIX] 10.95 49.8; 48.12 1.69 -22.68 0.03 26.12