RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3IYQ
BPC Identified: 104
Ambiguities: 3
tmRNA |
3IYQ |
1!A:345!A |
G:C |
WC [cWW][XIX] |
10.77 |
52.43; 54.01 |
1.59 |
-14.78 |
0.04 |
16.29 |
tmRNA |
3IYQ |
2!A:344!A |
G:C |
WC [cWW][XIX] |
10.86 |
40.8; 52.83 |
12.03 |
-21.11 |
0.06 |
30.73 |
tmRNA |
3IYQ |
2!A:341!A |
G:C |
rH_1 [tWH][-] |
10.54 |
51.16; 25.67 |
25.49 |
57.59 |
0.69 |
65.75 |
tmRNA |
3IYQ |
3!A:343!A |
G:U |
Wb [cWW][XXVIII] |
10.68 |
28.34; 66.31 |
37.97 |
-22.72 |
0.28 |
39.41 |
tmRNA |
3IYQ |
4!A:342!A |
G:C |
WC [cWW][XIX] |
10.43 |
41.64; 56.83 |
15.19 |
-42.24 |
0.2 |
52.3 |
tmRNA |
3IYQ |
5!A:340!A* |
G:A |
WC [cWW][VIII]; rWb* [---][-] |
12.99 |
46.82; 33.85 |
12.97 |
-71.34 |
0.79 |
86.9 |
tmRNA |
3IYQ |
7!A:339!A |
G:C |
WC [cWW][XIX] |
10.87 |
52.24; 49.98 |
2.26 |
-45.42 |
0.36 |
47.61 |
tmRNA |
3IYQ |
13!A:330!A |
G:G |
pfS_2 [---][-] |
8.41 |
81.66; 132.73 |
51.07 |
-49.42 |
0.68 |
35.01 |
tmRNA |
3IYQ |
22!A:314!A |
G:C |
srWC* [---][-] |
13.17 |
20.42; 4.7 |
15.72 |
106.48 |
1.14 |
85.58 |
tmRNA |
3IYQ |
22!A:313!A |
G:C |
rpS* [cHH][-] |
11.58 |
8.44; 18.5 |
10.07 |
-61.58 |
0.41 |
86.46 |
tmRNA |
3IYQ |
24!A:314!A |
G:C |
WC [cWW][XIX] |
10.91 |
48.81; 48.42 |
0.39 |
-22.93 |
0.01 |
28.36 |
tmRNA |
3IYQ |
25!A:313!A |
G:C |
WC [cWW][XIX] |
10.91 |
48.03; 46.46 |
1.57 |
-42.44 |
0.51 |
39.72 |
tmRNA |
3IYQ |
26!A:312!A |
U:A |
WC [cWW][XX] |
10.72 |
52.91; 53.45 |
0.54 |
-18.14 |
0.78 |
27.75 |
tmRNA |
3IYQ |
32!A:311!A |
A:G |
pS_1 [cSH][-] |
7.73 |
30.51; 133.89 |
103.37 |
-54.18 |
0.23 |
33.08 |
tmRNA |
3IYQ |
35!A:305!A |
G:C |
Wb* [---][-] |
11.04 |
64.86; 48.94 |
15.92 |
-29.73 |
2.57 |
26.59 |
tmRNA |
3IYQ |
35!A:304!A |
G:C |
Wb [---][-] |
10.84 |
44.03; 57.65 |
13.62 |
-10.01 |
0.86 |
31.91 |
tmRNA |
3IYQ |
36!A:310!A |
C:G |
fS(pb:O1P-N1) [---][-] |
12.23 |
119.54; 64.35 |
55.2 |
-35.73 |
1.43 |
45.89 |
tmRNA |
3IYQ |
36!A:303!A |
C:G |
WC [cWW][XIX] |
10.55 |
57.24; 48.47 |
8.76 |
-17.95 |
0.22 |
19.12 |
tmRNA |
3IYQ |
37!A:302!A |
G:C |
WC [cWW][XIX] |
11.19 |
42.22; 42.71 |
0.49 |
-29.01 |
0.41 |
39.24 |
tmRNA |
3IYQ |
38!A:306!A |
U:G |
sWb* [---][-] |
11.63 |
43.54; 41.29 |
2.25 |
98.89 |
1.3 |
52.3 |
tmRNA |
3IYQ |
38!A:303!A* |
U:G |
S*_1 [tHS][-]; pS* [cHS][-] |
9.84 |
27.55; 113.22 |
85.66 |
42.47 |
0.22 |
51.36 |
tmRNA |
3IYQ |
39!A:301!A |
G:C |
WC [cWW][XIX] |
11.14 |
45.53; 48.48 |
2.94 |
-10.93 |
0.33 |
16.24 |
tmRNA |
3IYQ |
40!A:300!A |
G:C |
WC [cWW][XIX] |
10.8 |
49.82; 53.96 |
4.15 |
-11.8 |
0.21 |
14.63 |
tmRNA |
3IYQ |
41!A:299!A |
C:G |
WC [cWW][XIX] |
10.27 |
66.47; 49.25 |
17.23 |
-19.12 |
0.29 |
33.8 |
tmRNA |
3IYQ |
42!A:298!A |
U:G |
Wb [cWW][XXVIII] |
10.42 |
75.27; 48.94 |
26.33 |
-17.15 |
0.05 |
23.89 |
tmRNA |
3IYQ |
45!A:292!A |
G:C |
WC [cWW][XIX] |
10.44 |
54.84; 55.75 |
0.91 |
-9.12 |
0.85 |
39.62 |
tmRNA |
3IYQ |
46!A:291!A |
C:G |
WC [cWW][XIX] |
10.46 |
65.46; 55.57 |
9.89 |
-4.05 |
0.42 |
15.88 |
tmRNA |
3IYQ |
47!A:290!A |
G:C |
WC [cWW][XIX] |
10.5 |
56.98; 54.12 |
2.86 |
3.4 |
0.21 |
32.35 |
tmRNA |
3IYQ |
48!A:289!A |
C:G |
WC [cWW][XIX] |
10.82 |
43.1; 53.52 |
10.42 |
-28.57 |
0.38 |
35.31 |
tmRNA |
3IYQ |
49!A:67!A |
C:G |
WC [cWW][XIX] |
10.62 |
53.94; 49.53 |
4.41 |
-4.66 |
0.55 |
32.79 |
tmRNA |
3IYQ |
50!A:66!A |
G:C |
WC [cWW][XIX] |
10.95 |
50.05; 49.03 |
1.02 |
-15.05 |
0.71 |
30.71 |
tmRNA |
3IYQ |
51!A:65!A |
A:U |
WC [cWW][XX] |
11.28 |
44.45; 44.83 |
0.38 |
-24.38 |
0.13 |
32.91 |
tmRNA |
3IYQ |
52!A:64!A |
G:C |
Wb [---][-] |
9.92 |
54.45; 83.2 |
28.75 |
-5.49 |
0.15 |
18.95 |
tmRNA |
3IYQ |
53!A:61!A |
G:G |
S_2_mo [---][-] |
10.31 |
21.45; 77.93 |
56.48 |
-166.11 |
0.45 |
8.81 |
tmRNA |
3IYQ |
53!A:54!A |
G:U |
pS* [cHS][-] |
7.16 |
131.74; 47.33 |
84.41 |
-35.26 |
1.06 |
27.85 |
tmRNA |
3IYQ |
55!A:78!A |
G:C |
WC [cWW][XIX] |
10.59 |
47.41; 57.83 |
10.42 |
-16.61 |
0.08 |
24.32 |
tmRNA |
3IYQ |
56!A:77!A |
C:G |
WC_Mo [cWW][XIX] |
10.37 |
66.93; 66.48 |
0.45 |
-30.28 |
0.04 |
41.11 |
tmRNA |
3IYQ |
57!A:76!A |
G:C |
WC [cWW][XIX] |
10.64 |
50.15; 55.04 |
4.9 |
-15.12 |
0.06 |
21.75 |
tmRNA |
3IYQ |
58!A:75!A |
G:C |
WC [cWW][XIX] |
10.84 |
48.91; 50.38 |
1.47 |
-22.29 |
0.07 |
30.59 |
tmRNA |
3IYQ |
58!A:74!A |
G:C |
rH_2 [---][-] |
13.2 |
22.1; 31.5 |
9.4 |
32.54 |
1.28 |
86.93 |
tmRNA |
3IYQ |
60!A:73!A |
U:A |
WC [cWW][XX] |
10.59 |
55.2; 54.98 |
0.22 |
-8.33 |
0.1 |
26.69 |
tmRNA |
3IYQ |
100!A:103!A |
A:U |
S* [tHS][-] |
9.09 |
114.22; 10.99 |
103.22 |
97.94 |
0.35 |
83.26 |
tmRNA |
3IYQ |
107!A:173!A |
C:A |
sWb [---][-] |
11.54 |
61.9; 22.64 |
39.26 |
-26.65 |
1.16 |
39.75 |
tmRNA |
3IYQ |
110!A:129!A |
U:A |
WC [cWW][XX] |
10.3 |
57.74; 59.68 |
1.94 |
0.58 |
0.83 |
20.85 |
tmRNA |
3IYQ |
111!A:128!A |
C:G |
WC [cWW][XIX] |
10.83 |
52.55; 51.86 |
0.68 |
-11.22 |
0.01 |
12.76 |
tmRNA |
3IYQ |
112!A:127!A |
G:C |
WC_Mo [cWW][XIX] |
10.55 |
59.16; 57.48 |
1.68 |
-36.16 |
0.23 |
44.61 |
tmRNA |
3IYQ |
113!A:126!A |
C:G |
WC [cWW][XIX] |
10.44 |
61.99; 55.85 |
6.14 |
-25.31 |
0.67 |
35.47 |
tmRNA |
3IYQ |
114!A:125!A |
G:C |
WC [cWW][XIX] |
10.66 |
51.26; 54.67 |
3.41 |
-19.75 |
0.19 |
28.98 |
tmRNA |
3IYQ |
115!A:124!A |
G:C |
WC [cWW][XIX] |
9.85 |
53.33; 66.29 |
12.96 |
-8.46 |
0.15 |
44.27 |
tmRNA |
3IYQ |
117!A:118!A |
U:U |
rpS(ps:O1P-O2*) [---][-] |
8.11 |
144.0; 77.23 |
66.77 |
29.88 |
0.88 |
46.95 |
tmRNA |
3IYQ |
132!A:168!A |
U:G |
sWb* [---][-] |
12.81 |
14.83; 53.74 |
38.91 |
-49.43 |
0.46 |
29.65 |
tmRNA |
3IYQ |
133!A:162!A |
C:G |
rS*_2 [---][-] |
13.75 |
17.08; 7.94 |
9.15 |
-126.74 |
0.82 |
24.09 |
tmRNA |
3IYQ |
135!A:165!A |
C:G |
pfS [---][-] |
9.2 |
93.4; 61.2 |
32.2 |
-16.62 |
1.89 |
39.96 |
tmRNA |
3IYQ |
138!A:160!A |
G:C |
WC [cWW][XIX] |
9.84 |
53.42; 65.4 |
11.98 |
-9.93 |
1.11 |
49.6 |
tmRNA |
3IYQ |
139!A:159!A |
G:C |
WC [cWW][XIX] |
10.21 |
54.98; 65.92 |
10.94 |
-12.72 |
0.15 |
22.29 |
tmRNA |
3IYQ |
140!A:158!A |
U:A |
WC [cWW][XX] |
11.49 |
41.01; 43.66 |
2.65 |
-44.78 |
0.09 |
53.98 |
tmRNA |
3IYQ |
141!A:155!A |
A:C |
rH_1 [rWH][XXV] |
11.13 |
5.62; 41.08 |
35.46 |
-33.81 |
0.18 |
41.81 |
tmRNA |
3IYQ |
142!A:155!A |
G:C |
Wb [---][-] |
10.24 |
48.01; 63.9 |
15.88 |
-19.36 |
0.62 |
21.2 |
tmRNA |
3IYQ |
143!A:154!A |
C:G |
WC [cWW][XIX] |
10.8 |
51.48; 52.69 |
1.21 |
3.52 |
0.38 |
20.53 |
tmRNA |
3IYQ |
145!A:182!A |
C:G |
rpS* [cHH][-] |
11.5 |
31.36; 9.29 |
22.07 |
-64.04 |
0.45 |
37.56 |
tmRNA |
3IYQ |
147!A:183!A |
G:C |
WC_mo [cWW][XIX] |
12.15 |
40.7; 36.94 |
3.76 |
-28.7 |
1.24 |
63.3 |
tmRNA |
3IYQ |
148!A:182!A |
C:G |
WC [cWW][XIX] |
11.06 |
49.79; 48.55 |
1.24 |
-19.76 |
0.38 |
31.38 |
tmRNA |
3IYQ |
149!A:182!A |
C:G |
pfS [---][-] |
8.64 |
98.06; 53.3 |
44.76 |
-28.09 |
2.06 |
15.4 |
tmRNA |
3IYQ |
150!A:180!A |
G:C |
WC [cWW][XIX] |
10.71 |
54.65; 53.83 |
0.82 |
-11.66 |
0.06 |
14.79 |
tmRNA |
3IYQ |
162!A:164!A |
G:A |
S [tSH][XI] |
8.53 |
110.86; 23.09 |
87.77 |
-30.61 |
0.84 |
32.73 |
tmRNA |
3IYQ |
183!A:185!A |
C:A |
rS* [tHH][-] |
10.39 |
34.96; 36.85 |
1.88 |
120.0 |
2.5 |
75.56 |
tmRNA |
3IYQ |
186!A:213!A |
G:G |
Wb [---][-] |
13.0 |
53.54; 23.43 |
30.11 |
-7.93 |
1.3 |
30.42 |
tmRNA |
3IYQ |
187!A:213!A |
C:G |
WC [cWW][XIX] |
10.6 |
56.32; 44.47 |
11.85 |
-33.97 |
0.92 |
31.55 |
tmRNA |
3IYQ |
188!A:212!A |
C:G |
WC [cWW][XIX] |
11.16 |
48.1; 44.08 |
4.02 |
-22.13 |
0.01 |
31.21 |
tmRNA |
3IYQ |
189!A:217!A |
C:A |
rWC_Mo [---][-] |
10.48 |
82.26; 22.92 |
59.34 |
-133.34 |
0.83 |
19.28 |
tmRNA |
3IYQ |
190!A:210!A |
G:C |
WC [cWW][XIX] |
10.79 |
48.39; 50.97 |
2.59 |
-21.61 |
0.8 |
25.8 |
tmRNA |
3IYQ |
191!A:209!A |
G:C |
WC [cWW][XIX] |
11.32 |
39.74; 37.95 |
1.79 |
-45.32 |
1.16 |
31.3 |
tmRNA |
3IYQ |
192!A:208!A |
G:C |
WC [cWW][XIX] |
10.99 |
49.63; 50.27 |
0.64 |
-13.1 |
0.26 |
10.29 |
tmRNA |
3IYQ |
198!A:230!A |
G:C |
WC [cWW][XIX] |
10.89 |
49.29; 52.33 |
3.04 |
-6.26 |
0.29 |
7.66 |
tmRNA |
3IYQ |
198!A:229!A |
G:G |
Wb [---][-] |
13.46 |
47.93; 24.66 |
23.26 |
5.52 |
1.08 |
15.47 |
tmRNA |
3IYQ |
200!A:228!A* |
C:G |
WC [cWW][XIX]; Wb_v [---][-] |
10.33 |
48.84; 47.35 |
1.49 |
-51.9 |
1.29 |
44.36 |
tmRNA |
3IYQ |
201!A:227!A |
C:G |
WC [cWW][XIX] |
10.91 |
43.51; 50.26 |
6.76 |
-29.03 |
0.19 |
41.74 |
tmRNA |
3IYQ |
202!A:226!A |
U:G |
Wb_Mo [cWW][XXVIII] |
9.33 |
98.12; 56.61 |
41.5 |
-23.15 |
0.73 |
56.52 |
tmRNA |
3IYQ |
204!A:224!A |
U:A |
WC [cWW][XX] |
9.59 |
69.16; 65.69 |
3.47 |
-3.48 |
0.67 |
14.96 |
tmRNA |
3IYQ |
212!A:217!A |
G:A |
pfS_1 [---][-] |
6.64 |
139.72; 79.53 |
60.19 |
-2.28 |
0.64 |
47.86 |
tmRNA |
3IYQ |
235!A:267!A |
U:G |
Wb_Mo [cWW][XXVIII] |
10.02 |
82.19; 51.25 |
30.94 |
-39.28 |
2.06 |
30.22 |
tmRNA |
3IYQ |
235!A:266!A |
U:A |
WC [cWW][XX] |
10.62 |
54.19; 53.13 |
1.06 |
-26.01 |
0.01 |
27.96 |
tmRNA |
3IYQ |
236!A:265!A |
C:G |
Wb [---][-] |
10.36 |
66.41; 42.51 |
23.9 |
-54.02 |
1.48 |
48.44 |
tmRNA |
3IYQ |
236!A:264!A |
C:G |
WC_mo [cWW][XIX] |
11.97 |
42.58; 42.05 |
0.53 |
-19.08 |
0.28 |
29.42 |
tmRNA |
3IYQ |
237!A:273!A |
C:G |
S*(pb:O1P-N2)_1 [---][-] |
11.11 |
122.41; 70.75 |
51.66 |
-3.02 |
1.19 |
38.9 |
tmRNA |
3IYQ |
237!A:264!A |
C:G |
pfS [---][-] |
9.67 |
86.73; 62.17 |
24.56 |
-36.37 |
0.38 |
38.63 |
tmRNA |
3IYQ |
237!A:263!A |
C:A |
Wb [cWW][-] |
11.2 |
61.45; 40.55 |
20.9 |
-23.57 |
1.21 |
45.07 |
tmRNA |
3IYQ |
238!A:263!A |
U:A |
WC [cWW][XX] |
9.36 |
57.24; 67.86 |
10.63 |
-33.78 |
2.21 |
71.57 |
tmRNA |
3IYQ |
239!A:262!A |
G:C |
WC [cWW][XIX] |
9.97 |
55.4; 60.21 |
4.81 |
1.85 |
2.16 |
54.4 |
tmRNA |
3IYQ |
241!A:260!A |
C:G |
WC [cWW][XIX] |
10.08 |
58.45; 53.14 |
5.31 |
0.0 |
1.44 |
47.64 |
tmRNA |
3IYQ |
243!A:256!A |
G:C |
WC [cWW][XIX] |
10.61 |
44.64; 50.29 |
5.65 |
-14.1 |
1.92 |
47.05 |
tmRNA |
3IYQ |
244!A:255!A |
C:G |
WC [cWW][XIX] |
11.05 |
51.27; 44.96 |
6.31 |
12.25 |
0.17 |
23.84 |
tmRNA |
3IYQ |
247!A:285!A |
G:C |
WC [cWW][XIX] |
10.9 |
42.05; 53.99 |
11.93 |
-35.63 |
0.67 |
49.18 |
tmRNA |
3IYQ |
248!A:284!A |
U:A |
WC [cWW][XX] |
11.41 |
43.24; 39.55 |
3.69 |
-37.7 |
0.03 |
55.27 |
tmRNA |
3IYQ |
249!A:283!A |
C:G |
pfS [---][-] |
9.92 |
92.41; 55.78 |
36.63 |
-6.41 |
0.57 |
10.46 |
tmRNA |
3IYQ |
250!A:282!A |
C:G |
WC [cWW][XIX] |
10.5 |
59.54; 52.6 |
6.94 |
3.36 |
0.39 |
7.35 |
tmRNA |
3IYQ |
251!A:281!A |
G:C |
WC [cWW][XIX] |
10.84 |
48.29; 52.51 |
4.22 |
-9.85 |
0.12 |
20.5 |
tmRNA |
3IYQ |
252!A:280!A |
C:G |
WC [cWW][XIX] |
10.49 |
59.69; 54.37 |
5.32 |
-7.81 |
0.09 |
17.17 |
tmRNA |
3IYQ |
253!A:279!A |
G:C |
Wb [---][-] |
10.19 |
53.83; 77.74 |
23.91 |
-14.8 |
0.2 |
28.22 |
tmRNA |
3IYQ |
275!A:276!A |
G:A |
rS(bs:N2-O2*) [---][-] |
5.43 |
111.24; 111.27 |
0.03 |
-97.97 |
1.5 |
71.72 |
tmRNA |
3IYQ |
322!A:338!A |
G:C |
WC [cWW][XIX] |
10.78 |
53.18; 51.41 |
1.77 |
-18.93 |
0.35 |
23.92 |
tmRNA |
3IYQ |
324!A:336!A |
G:C |
WC_Mo [cWW][XIX] |
10.52 |
61.79; 56.64 |
5.15 |
-38.1 |
0.19 |
42.7 |
tmRNA |
3IYQ |
325!A:335!A |
G:C |
WC [cWW][XIX] |
10.9 |
49.96; 51.7 |
1.74 |
-6.09 |
0.11 |
11.03 |
tmRNA |
3IYQ |
326!A:334!A |
G:C |
WC [cWW][XIX] |
10.95 |
49.8; 48.12 |
1.69 |
-22.68 |
0.03 |
26.12 |