Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3IYR BPC Identified: 97 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tmRNA 3IYR 1!A:345!A G:C WC [cWW][XIX] 10.48 51.67; 56.83 5.16 1.9 0.83 25.14
tmRNA 3IYR 2!A:344!A G:C WC [cWW][XIX] 10.74 50.44; 50.32 0.12 -15.64 0.27 29.19
tmRNA 3IYR 3!A:343!A G:U Wb [cWW][XXVIII] 10.39 43.38; 57.48 14.1 -37.84 1.68 51.23
tmRNA 3IYR 3!A:342!A G:C rH_2 [---][-] 12.96 16.94; 28.47 11.53 -19.12 0.38 43.7
tmRNA 3IYR 4!A:342!A G:C WC_Mo [cWW][XIX] 10.37 57.02; 42.19 14.83 -62.17 1.34 61.07
tmRNA 3IYR 6!A:340!A U:A sWC [---][-] 10.42 86.58; 31.79 54.79 -52.19 0.63 57.11
tmRNA 3IYR 7!A:339!A G:C WC [cWW][XIX] 10.71 52.44; 53.47 1.03 -8.08 0.66 18.1
tmRNA 3IYR 21!A:316!A G:U Wb_mo [cWW][XXVIII] 11.94 22.42; 41.13 18.71 -38.21 0.05 55.67
tmRNA 3IYR 25!A:313!A G:C WC [cWW][XIX] 10.83 47.91; 51.27 3.36 -24.56 1.1 29.72
tmRNA 3IYR 26!A:312!A U:A WC [cWW][XX] 10.41 57.86; 55.12 2.74 -36.26 0.3 40.92
tmRNA 3IYR 32!A:310!A A:G S [tSH][XI] 10.86 5.38; 92.58 87.21 29.96 2.08 52.69
tmRNA 3IYR 35!A:304!A G:C WC [cWW][XIX] 10.49 53.5; 54.68 1.18 -5.3 0.32 38.76
tmRNA 3IYR 36!A:303!A C:G WC [cWW][XIX] 10.61 56.21; 52.61 3.6 -1.99 0.52 15.88
tmRNA 3IYR 37!A:302!A G:C WC [cWW][XIX] 10.63 53.72; 53.2 0.53 -18.99 0.07 28.68
tmRNA 3IYR 39!A:301!A G:C WC [cWW][XIX] 10.84 52.96; 50.0 2.96 -13.99 0.63 22.94
tmRNA 3IYR 40!A:300!A G:C WC [cWW][XIX] 10.71 51.1; 55.03 3.93 -6.49 0.13 6.65
tmRNA 3IYR 44!A:293!A C:G Wb [---][-] 10.28 73.78; 47.2 26.58 -51.51 0.04 62.73
tmRNA 3IYR 45!A:292!A G:C WC [cWW][XIX] 10.55 50.04; 53.9 3.86 -18.61 1.14 43.14
tmRNA 3IYR 46!A:291!A C:G WC [cWW][XIX] 10.57 56.14; 54.6 1.55 1.27 0.32 15.51
tmRNA 3IYR 47!A:290!A G:C WC [cWW][XIX] 10.74 50.1; 53.59 3.49 -12.22 0.15 24.25
tmRNA 3IYR 48!A:289!A C:G WC [cWW][XIX] 10.9 49.09; 41.58 7.51 21.94 0.85 19.07
tmRNA 3IYR 50!A:65!A G:U WC_mo [---][-] 12.42 48.44; 28.06 20.38 12.96 1.78 14.68
tmRNA 3IYR 51!A:65!A A:U WC [cWW][XX] 10.96 46.54; 50.49 3.95 -37.1 1.26 44.91
tmRNA 3IYR 52!A:64!A G:C WC [cWW][XIX] 11.02 47.08; 51.65 4.57 -9.32 0.29 7.37
tmRNA 3IYR 54!A:57!A U:G H_2 [---][-] 9.83 60.47; 27.14 33.32 -7.42 0.16 28.23
tmRNA 3IYR 54!A:56!A U:C H_2 [---][-] 9.91 85.1; 26.05 59.05 -29.05 0.75 9.45
tmRNA 3IYR 55!A:78!A G:C WC [cWW][XIX] 10.53 52.65; 57.8 5.14 -15.26 0.22 22.92
tmRNA 3IYR 56!A:77!A C:G WC [cWW][XIX] 10.49 60.31; 50.56 9.75 -19.1 0.19 30.09
tmRNA 3IYR 57!A:76!A G:C WC [cWW][XIX] 10.57 52.03; 57.21 5.18 -11.05 0.3 17.56
tmRNA 3IYR 58!A:75!A G:C WC [cWW][XIX] 10.96 45.99; 49.23 3.24 -17.87 0.0 27.93
tmRNA 3IYR 58!A:74!A G:C rH_2 [---][-] 12.59 20.24; 38.24 18.0 17.2 1.26 70.84
tmRNA 3IYR 60!A:73!A U:A WC [cWW][XX] 9.78 67.17; 63.3 3.87 -25.22 0.04 36.58
tmRNA 3IYR 61!A:73!A G:A pfS*_2 [cWS][-] 9.82 48.25; 96.04 47.79 -39.43 0.66 34.41
tmRNA 3IYR 67!A:296!A G:G S_1 [tSH][-] 11.26 82.83; 17.03 65.8 64.41 0.93 30.2
tmRNA 3IYR 100!A:106!A A:G rS* [tHH][-] 12.29 15.46; 18.09 2.63 -21.89 0.25 82.81
tmRNA 3IYR 110!A:129!A U:A WC [cWW][XX] 10.91 51.91; 51.23 0.69 -2.55 0.21 10.24
tmRNA 3IYR 111!A:128!A C:G WC [cWW][XIX] 10.25 60.48; 51.57 8.91 0.67 0.04 32.01
tmRNA 3IYR 112!A:127!A G:C WC [cWW][XIX] 10.12 59.98; 59.87 0.11 -17.87 1.25 48.39
tmRNA 3IYR 113!A:126!A C:G WC [cWW][XIX] 10.79 52.09; 52.53 0.44 -14.14 0.29 18.73
tmRNA 3IYR 114!A:125!A G:C WC [cWW][XIX] 10.82 49.97; 48.63 1.34 -28.67 0.4 39.65
tmRNA 3IYR 115!A:124!A G:C WC [cWW][XIX] 10.85 59.23; 44.76 14.47 -26.73 0.52 29.03
tmRNA 3IYR 130!A:169!A C:G rS*_2 [---][-] 12.69 27.68; 7.44 20.24 174.08 1.35 67.57
tmRNA 3IYR 132!A:168!A U:G Wb [cWW][XXVIII] 11.32 57.41; 28.12 29.29 -1.35 0.16 26.49
tmRNA 3IYR 133!A:167!A C:G WC [cWW][XIX] 10.71 54.07; 52.57 1.51 -7.61 0.05 16.39
tmRNA 3IYR 134!A:174!A G:C pfS*(bp:N4-O1P) [---][-] 10.35 120.41; 59.26 61.15 59.81 1.03 46.59
tmRNA 3IYR 134!A:166!A G:C WC [cWW][XIX] 10.59 54.85; 57.02 2.16 -7.47 0.04 9.84
tmRNA 3IYR 135!A:165!A C:G Wb [---][-] 9.97 80.71; 51.72 28.99 -18.07 1.36 31.01
tmRNA 3IYR 137!A:161!A C:G WC [cWW][XIX] 10.58 56.11; 56.69 0.58 -20.7 0.64 28.16
tmRNA 3IYR 138!A:160!A G:C WC [cWW][XIX] 10.57 53.97; 55.92 1.95 -15.44 0.01 27.12
tmRNA 3IYR 139!A:159!A G:C WC [cWW][XIX] 10.73 54.39; 51.67 2.72 -4.24 0.12 18.04
tmRNA 3IYR 140!A:159!A U:C Wb* [---][-] 8.15 45.37; 84.42 39.05 -23.84 0.9 28.02
tmRNA 3IYR 141!A:156!A A:U WC [cWW][XX] 10.62 56.6; 48.0 8.61 -32.02 0.66 40.18
tmRNA 3IYR 143!A:144!A C:C S(sp:O2*-O2P) [---][-] 8.39 148.21; 52.96 95.25 146.26 1.36 75.28
tmRNA 3IYR 147!A:183!A G:C WC [cWW][XIX] 11.51 43.9; 42.56 1.34 -22.33 0.33 31.13
tmRNA 3IYR 148!A:182!A C:G WC [cWW][XIX] 10.68 53.64; 49.86 3.78 -16.36 0.92 24.4
tmRNA 3IYR 149!A:181!A C:G Wb*_Mo [---][-] 10.47 59.3; 75.09 15.79 -26.39 0.1 43.62
tmRNA 3IYR 150!A:180!A G:C WC [cWW][XIX] 10.73 52.51; 54.44 1.93 1.46 0.26 2.48
tmRNA 3IYR 151!A:179!A G:C Wb* [---][-] 11.01 74.18; 54.48 19.69 36.53 0.33 47.86
tmRNA 3IYR 153!A:178!A G:C S [---][-] 9.24 14.02; 105.5 91.48 -66.46 0.93 15.92
tmRNA 3IYR 157!A:162!A C:G rS*_1 [tHH][-] 10.95 27.17; 20.53 6.64 -108.66 0.26 26.58
tmRNA 3IYR 171!A:173!A A:A pS [cSH][-] 7.11 114.08; 22.7 91.39 -48.86 0.81 47.83
tmRNA 3IYR 187!A:213!A C:G WC [cWW][XIX] 10.79 48.08; 49.46 1.38 -46.92 0.74 50.35
tmRNA 3IYR 188!A:212!A C:G Wb [---][-] 10.1 66.58; 51.0 15.58 -35.09 1.83 26.32
tmRNA 3IYR 190!A:210!A G:C Wb [---][-] 10.02 52.02; 66.55 14.53 -29.75 1.79 40.29
tmRNA 3IYR 191!A:209!A G:C WC [cWW][XIX] 10.84 42.01; 41.9 0.11 -26.0 1.41 49.25
tmRNA 3IYR 192!A:208!A G:C WC [cWW][XIX] 10.76 49.38; 49.15 0.23 -19.39 0.25 27.3
tmRNA 3IYR 198!A:230!A G:C WC [cWW][XIX] 11.18 43.85; 51.9 8.05 -30.1 0.69 39.06
tmRNA 3IYR 199!A:229!A C:G WC [cWW][XIX] 10.41 59.71; 48.11 11.6 -18.69 0.4 14.02
tmRNA 3IYR 200!A:228!A C:G WC [cWW][XIX] 10.58 53.3; 53.59 0.29 -27.02 0.11 32.64
tmRNA 3IYR 200!A:225!A C:G rS*_1 [tHH][-] 11.02 31.2; 5.02 26.18 -3.93 0.01 48.01
tmRNA 3IYR 201!A:227!A C:G WC [cWW][XIX] 10.65 49.57; 56.09 6.52 -22.47 0.32 35.73
tmRNA 3IYR 201!A:225!A C:G rS*_2 [---][-] 12.09 10.34; 28.61 18.27 46.72 0.51 47.3
tmRNA 3IYR 216!A:217!A A:A pS [cSH][-] 6.25 150.26; 40.21 110.04 27.11 2.13 51.15
tmRNA 3IYR 231!A:232!A U:C pfS*_1 [cWS][-] 5.63 70.35; 125.08 54.74 5.65 1.97 65.42
tmRNA 3IYR 233!A:236!A G:C S*(pb:O2P-N1) [---][-] 9.35 72.73; 53.93 18.8 -110.98 2.58 55.76
tmRNA 3IYR 235!A:267!A U:G Wb [cWW][XXVIII] 9.95 84.79; 35.74 49.05 -24.8 0.42 51.18
tmRNA 3IYR 235!A:266!A U:A WC [cWW][XX] 10.63 54.12; 50.11 4.01 -18.69 1.62 48.38
tmRNA 3IYR 236!A:263!A C:A rH* [---][-] 12.53 15.63; 50.37 34.74 1.5 0.18 42.45
tmRNA 3IYR 237!A:264!A C:G pfS [---][-] 9.8 85.18; 48.01 37.17 -45.43 1.67 49.54
tmRNA 3IYR 237!A:263!A C:A Wb* [cWW][-] 10.36 52.15; 67.94 15.79 -35.18 0.45 39.87
tmRNA 3IYR 239!A:262!A G:C WC [cWW][XIX] 10.67 48.5; 46.52 1.98 24.52 0.11 25.6
tmRNA 3IYR 240!A:261!A G:C WC [cWW][XIX] 10.84 42.04; 50.51 8.47 52.39 1.62 53.67
tmRNA 3IYR 241!A:260!A C:G WC [cWW][XIX] 10.24 51.57; 53.03 1.46 -20.18 1.49 46.74
tmRNA 3IYR 243!A:256!A G:C WC [cWW][XIX] 10.6 51.65; 57.4 5.75 -19.38 0.75 33.75
tmRNA 3IYR 245!A:255!A C:G srWC* [---][-] 12.95 23.29; 35.07 11.78 38.45 2.12 63.31
tmRNA 3IYR 247!A:285!A G:C WC [cWW][XIX] 10.64 52.19; 57.36 5.17 -35.12 0.72 47.73
tmRNA 3IYR 248!A:284!A U:A WC [cWW][XX] 10.99 45.69; 47.81 2.12 -31.86 0.31 49.29
tmRNA 3IYR 249!A:283!A C:G WC [cWW][XIX] 10.64 55.85; 50.27 5.59 -20.8 0.3 25.61
tmRNA 3IYR 250!A:282!A C:G WC [cWW][XIX] 10.67 55.15; 50.51 4.64 -13.48 0.06 22.57
tmRNA 3IYR 252!A:280!A C:G WC [cWW][XIX] 10.66 55.84; 53.81 2.03 -9.43 0.26 11.07
tmRNA 3IYR 253!A:279!A G:C WC [cWW][XIX] 10.56 53.56; 56.25 2.69 -33.22 0.53 49.91
tmRNA 3IYR 254!A:278!A G:A S [tSH][XI] 9.39 91.45; 2.68 88.77 94.16 0.01 21.48
tmRNA 3IYR 268!A:269!A G:A rS(bs:N2-O2*) [---][-] 6.05 97.22; 162.31 65.09 83.66 1.03 36.35
tmRNA 3IYR 275!A:277!A G:A S(bp:N2-O2P)_3 [---][-] 11.84 89.19; 75.9 13.29 -126.6 0.63 53.3
tmRNA 3IYR 322!A:338!A G:C WC [cWW][XIX] 10.61 46.91; 55.37 8.46 -2.52 0.91 20.72
tmRNA 3IYR 324!A:336!A G:C WC [cWW][XIX] 10.86 54.13; 51.23 2.9 -14.96 0.01 17.6
tmRNA 3IYR 325!A:335!A G:C WC [cWW][XIX] 10.61 49.25; 57.53 8.27 -6.81 0.49 15.21