Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3K0J BPC Identified: 82 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3K0J 4!E:90!E G:C WC [cWW][XIX] 10.68 56.58; 54.65 1.94 -6.61 0.7 3.51
Riboswitch 3K0J 5!E:89!E C:G WC [cWW][XIX] 11.26 40.03; 54.13 14.1 -11.04 0.12 7.56
Riboswitch 3K0J 6!E:88!E G:C WC [cWW][XIX] 10.34 57.51; 53.23 4.28 -3.59 0.24 8.02
Riboswitch 3K0J 7!E:87!E A:U WC [cWW][XX] 10.64 44.17; 60.67 16.51 -11.43 0.12 14.66
Riboswitch 3K0J 8!E:86!E C:G WC [cWW][XIX] 10.75 49.06; 51.66 2.6 -9.32 0.22 10.41
Riboswitch 3K0J 9!E:85!E U:A WC [cWW][XX] 10.43 53.26; 61.8 8.54 -5.34 0.44 11.81
Riboswitch 3K0J 10!E:51!E C:G WC [cWW][XIX] 10.64 52.74; 58.01 5.27 -3.2 0.06 3.89
Riboswitch 3K0J 11!E:84!E G:A rpS [cSS][-] 5.98 107.05; 140.85 33.8 -0.43 0.1 31.81
Riboswitch 3K0J 11!E:50!E G:C WC [cWW][XIX] 10.55 52.25; 54.09 1.84 -7.08 0.15 8.52
Riboswitch 3K0J 12!E:56!E G:A rS [tSS][-] 8.62 87.86; 56.65 31.21 177.97 0.31 25.07
Riboswitch 3K0J 12!E:49!E G:C WC [cWW][XIX] 10.35 53.17; 56.79 3.62 -11.94 0.17 16.37
Riboswitch 3K0J 13!E:57!E G:C rS(ss:O2*-O2*) [---][-] 5.2 166.58; 149.58 16.99 -52.62 2.49 38.43
Riboswitch 3K0J 13!E:48!E G:C WC [cWW][XIX] 10.61 53.63; 52.14 1.49 -12.07 0.02 15.06
Riboswitch 3K0J 14!E:47!E G:A WC [cWW][VIII] 12.58 46.53; 44.68 1.85 -16.35 0.44 25.85
Riboswitch 3K0J 14!E:42!E G:G rS [tSS][IV] 8.34 80.74; 76.54 4.2 -167.05 0.53 23.36
Riboswitch 3K0J 15!E:45!E U:A Wb [---][-] 11.46 53.88; 32.69 21.19 2.04 0.8 20.17
Riboswitch 3K0J 16!E:71!E G:U rpS [cSS][-] 6.74 106.01; 119.14 13.13 -39.1 0.51 30.57
Riboswitch 3K0J 16!E:38!E G:C WC [cWW][XIX] 10.65 52.03; 54.19 2.16 0.52 0.49 14.55
Riboswitch 3K0J 17!E:70!E C:A rpS(sb:O2*-N3) [cSS][-] 5.47 137.47; 94.92 42.55 -72.89 0.0 44.31
Riboswitch 3K0J 17!E:37!E C:G WC [cWW][XIX] 10.34 61.12; 58.1 3.03 -6.02 0.38 19.63
Riboswitch 3K0J 18!E:36!E C:G WC [cWW][XIX] 10.67 55.27; 54.83 0.44 16.01 0.04 13.67
Riboswitch 3K0J 20!E:35!E U:A WC [cWW][XX] 9.91 60.32; 59.44 0.87 4.21 0.16 10.37
Riboswitch 3K0J 21!E:34!E C:G WC [cWW][XIX] 10.41 61.09; 57.87 3.22 2.39 0.33 4.63
Riboswitch 3K0J 22!E:33!E C:G WC [cWW][XIX] 10.81 56.91; 58.25 1.33 -0.24 0.67 10.22
Riboswitch 3K0J 37!E:69!E G:A fS [tSW][X] 9.82 116.86; 38.61 78.26 92.46 0.13 66.37
Riboswitch 3K0J 39!E:43!E U:A rH_1 [tWH][XXIV] 9.43 36.67; 19.58 17.09 -163.22 0.1 19.79
Riboswitch 3K0J 41!E:48!E A:C rpS(sb:O2*-N3) [cSS][-] 6.1 96.49; 150.72 54.23 -32.0 0.99 21.83
Riboswitch 3K0J 49!E:56!E C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.9 111.6; 145.23 33.62 -21.0 1.92 33.79
Riboswitch 3K0J 50!E:84!E C:A fS(sb:O2*-N1)_1 [tSS][-] 8.69 87.46; 51.34 36.12 159.11 1.24 40.08
Riboswitch 3K0J 56!E:83!E A:G S [tSH][XI] 9.68 2.97; 97.38 94.41 -86.19 0.39 14.4
Riboswitch 3K0J 57!E:82!E C:G WC [cWW][XIX] 10.54 53.05; 52.22 0.83 -8.48 0.51 14.25
Riboswitch 3K0J 58!E:81!E C:G WC [cWW][XIX] 10.61 53.43; 55.52 2.09 -13.67 0.32 24.23
Riboswitch 3K0J 59!E:80!E U:A WC [cWW][XX] 10.81 50.59; 57.28 6.7 -11.68 0.43 6.1
Riboswitch 3K0J 60!E:78!E G:G H_1 [cWH][VI] 11.75 52.61; 26.5 26.11 24.36 0.42 22.6
Riboswitch 3K0J 63!E:76!E C:G WC [cWW][XIX] 10.67 51.22; 59.08 7.86 -14.69 0.58 44.46
Riboswitch 3K0J 64!E:75!E U:A WC [cWW][XX] 10.36 55.23; 53.55 1.68 -12.11 0.28 23.85
Riboswitch 3K0J 65!E:74!E G:C WC [cWW][XIX] 10.59 59.57; 53.13 6.45 -6.66 0.22 15.95
Riboswitch 3K0J 66!E:73!E G:C WC [cWW][XIX] 10.9 57.38; 55.7 1.68 -2.26 0.27 3.58
Riboswitch 3K0J 68!E:71!E U:U S(bp:N3-O2P) [---][-] 8.85 77.78; 34.48 43.31 -149.12 1.38 16.7
Riboswitch 3K0J 68!E:70!E U:A S(sb:O2*-N7) [---][-] 6.49 79.92; 43.17 36.75 -169.0 0.37 33.0
Riboswitch 3K0J 104!F:190!F G:C WC [cWW][XIX] 10.37 52.6; 61.01 8.42 -22.6 0.22 23.16
Riboswitch 3K0J 105!F:189!F C:G WC [cWW][XIX] 10.88 49.56; 58.11 8.55 -8.12 0.51 19.04
Riboswitch 3K0J 106!F:188!F G:C WC [cWW][XIX] 10.18 60.45; 58.34 2.11 -10.74 0.25 18.39
Riboswitch 3K0J 107!F:187!F A:U WC [cWW][XX] 10.6 47.44; 54.57 7.14 -8.41 0.03 10.75
Riboswitch 3K0J 108!F:186!F C:G WC [cWW][XIX] 10.81 45.27; 57.03 11.76 -12.08 0.05 15.33
Riboswitch 3K0J 109!F:185!F U:A WC [cWW][XX] 9.97 63.41; 71.21 7.8 -19.58 0.23 22.45
Riboswitch 3K0J 110!F:151!F C:G Wb [---][-] 10.68 64.46; 51.9 12.56 -12.82 0.02 16.16
Riboswitch 3K0J 111!F:184!F G:A rpS [cSS][-] 5.83 113.39; 141.11 27.72 -22.83 0.22 12.93
Riboswitch 3K0J 111!F:150!F G:C WC [cWW][XIX] 10.26 55.98; 61.88 5.9 -9.04 0.08 10.38
Riboswitch 3K0J 112!F:156!F G:A rS [tSS][-] 8.2 85.33; 53.95 31.38 170.67 0.45 19.32
Riboswitch 3K0J 112!F:149!F G:C WC [cWW][XIX] 10.04 51.14; 60.0 8.86 -10.91 0.33 17.82
Riboswitch 3K0J 113!F:157!F G:C rS(ss:O2*-O2*) [---][-] 5.19 157.03; 149.76 7.27 -73.0 2.7 38.53
Riboswitch 3K0J 113!F:148!F G:C WC [cWW][XIX] 10.84 48.76; 49.73 0.96 -15.21 0.28 19.86
Riboswitch 3K0J 114!F:147!F G:A WC [cWW][VIII] 13.09 50.26; 48.79 1.47 -8.62 0.16 11.63
Riboswitch 3K0J 114!F:142!F G:G rS [tSS][IV] 8.45 83.48; 73.17 10.31 -165.68 1.09 22.09
Riboswitch 3K0J 115!F:145!F U:A WC [cWW][XX] 10.63 64.22; 60.58 3.64 5.78 0.45 10.69
Riboswitch 3K0J 116!F:171!F G:U rpS [cSS][-] 6.64 106.02; 120.33 14.31 -40.43 0.93 35.6
Riboswitch 3K0J 116!F:138!F G:C WC [cWW][XIX] 10.65 49.86; 50.53 0.67 -5.63 0.38 18.08
Riboswitch 3K0J 117!F:170!F C:A rpS(sb:O2*-N3) [cSS][-] 5.77 128.79; 95.75 33.05 -62.74 0.55 41.52
Riboswitch 3K0J 117!F:137!F C:G WC [cWW][XIX] 10.85 49.35; 57.71 8.37 -9.38 0.74 27.58
Riboswitch 3K0J 118!F:136!F C:G WC [cWW][XIX] 10.34 56.33; 55.93 0.41 -3.53 0.57 26.05
Riboswitch 3K0J 120!F:135!F U:A WC [cWW][XX] 10.2 54.67; 62.93 8.26 7.51 0.28 36.82
Riboswitch 3K0J 121!F:134!F C:G WC [cWW][XIX] 11.02 45.33; 58.12 12.78 4.42 0.59 9.5
Riboswitch 3K0J 122!F:133!F C:G Wb [---][-] 10.38 68.86; 50.07 18.79 11.82 0.3 18.33
Riboswitch 3K0J 137!F:169!F G:A fS [tSW][X] 10.18 114.84; 38.97 75.88 85.37 0.48 63.93
Riboswitch 3K0J 139!F:143!F U:A rH_1 [tWH][XXIV] 9.45 35.63; 13.54 22.09 -160.03 0.26 15.91
Riboswitch 3K0J 140!F:142!F G:G S(sb:O2*-N7)_1 [---][-] 6.94 84.6; 28.59 56.01 -165.92 1.09 31.12
Riboswitch 3K0J 141!F:148!F A:C rpS(sb:O2*-N3) [cSS][-] 6.47 94.36; 147.23 52.87 -44.51 0.42 23.51
Riboswitch 3K0J 149!F:156!F C:A rpS(ss:O2*-O2*)_1 [cSS][-] 5.64 113.68; 143.66 29.98 -26.37 1.48 29.21
Riboswitch 3K0J 150!F:184!F C:A fS(sb:O2*-N1)_1 [tSS][-] 8.65 96.31; 55.85 40.46 159.57 1.15 22.95
Riboswitch 3K0J 153!F:184!F A:A rS* [tHH][-] 10.95 22.82; 13.5 9.32 93.69 0.25 23.71
Riboswitch 3K0J 156!F:183!F A:G S [tSH][XI] 9.64 10.21; 91.86 81.65 178.51 0.48 16.23
Riboswitch 3K0J 157!F:182!F C:G WC [cWW][XIX] 10.85 53.81; 54.98 1.17 -4.78 0.65 15.97
Riboswitch 3K0J 158!F:181!F C:G WC [cWW][XIX] 10.64 49.45; 53.91 4.46 -17.02 0.12 25.61
Riboswitch 3K0J 159!F:180!F U:A WC [cWW][XX] 10.49 55.07; 53.0 2.06 -14.05 0.54 21.11
Riboswitch 3K0J 160!F:178!F G:G H_1 [cWH][VI] 11.1 58.2; 30.77 27.43 17.0 0.75 18.55
Riboswitch 3K0J 161!F:177!F A:C rWC_Mo [---][-] 10.82 16.22; 83.14 66.92 157.05 0.41 17.38
Riboswitch 3K0J 163!F:176!F C:G WC [cWW][XIX] 10.84 47.47; 57.22 9.76 -15.93 0.45 15.07
Riboswitch 3K0J 164!F:175!F U:A WC [cWW][XX] 10.92 50.75; 51.39 0.64 -9.56 0.11 11.61
Riboswitch 3K0J 165!F:174!F G:C WC [cWW][XIX] 11.07 47.69; 49.57 1.88 1.1 0.22 11.5
Riboswitch 3K0J 166!F:173!F G:C WC [cWW][XIX] 10.56 53.38; 53.97 0.6 -9.39 0.07 10.61
Riboswitch 3K0J 168!F:170!F U:A S(sb:O2*-N7) [---][-] 6.74 80.37; 45.47 34.9 -175.83 0.72 27.53