Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3KFU BPC Identified: 136 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3KFU 1!K:72!K U:A WC [cWW][XX] 10.6 53.26; 57.5 4.24 -8.2 0.51 27.07
tRNA 3KFU 2!K:71!K C:G WC [cWW][XIX] 10.57 54.51; 56.64 2.13 -6.47 0.15 20.7
tRNA 3KFU 3!K:70!K C:G WC [cWW][XIX] 10.78 53.84; 56.6 2.76 -3.61 0.06 11.03
tRNA 3KFU 4!K:69!K G:C WC [cWW][XIX] 10.57 57.48; 54.78 2.71 -2.55 0.32 11.05
tRNA 3KFU 5!K:68!K C:G WC [cWW][XIX] 10.57 58.34; 60.17 1.83 -3.78 0.15 10.27
tRNA 3KFU 6!K:67!K G:C WC [cWW][XIX] 10.69 60.59; 55.29 5.3 -6.16 0.18 21.63
tRNA 3KFU 7!K:66!K G:C WC [cWW][XIX] 10.71 57.61; 59.66 2.05 5.0 0.16 8.98
tRNA 3KFU 8!K:21!K U:A fS(sb:O2*-N1) [tSW][-] 8.55 104.27; 55.64 48.63 158.01 0.17 23.31
tRNA 3KFU 8!K:14!K U:A rH_1 [tWH][XXIV] 9.51 34.61; 20.11 14.51 178.17 0.37 9.21
tRNA 3KFU 9!K:23!K A:A rS* [tHH][-] 10.57 22.06; 25.48 3.42 71.95 1.63 38.19
tRNA 3KFU 10!K:45!K G:G pS_1 [cSH][-] 9.28 41.75; 117.22 75.47 -6.48 0.61 28.46
tRNA 3KFU 10!K:25!K G:C WC [cWW][XIX] 10.69 47.64; 55.99 8.35 -6.23 0.26 14.36
tRNA 3KFU 11!K:24!K C:G WC [cWW][XIX] 10.53 55.57; 54.55 1.02 -9.56 0.78 20.55
tRNA 3KFU 12!K:23!K U:A WC [cWW][XX] 10.74 54.05; 51.76 2.3 12.23 0.93 22.02
tRNA 3KFU 13!K:22!K C:G WC [cWW][XIX] 10.6 54.22; 57.98 3.76 -0.55 0.21 4.36
tRNA 3KFU 14!K:21!K A:A pfS [cSW][-] 10.35 30.81; 111.39 80.57 -17.7 0.71 16.86
tRNA 3KFU 15!K:48!K G:C rWb [tWW][XXII] 10.78 38.95; 57.28 18.33 -167.36 0.23 9.33
tRNA 3KFU 18!K:55!K G:U fS_PSU [---][-] 8.8 31.27; 129.63 98.36 -137.1 0.09 20.09
tRNA 3KFU 19!K:56!K G:C WC [cWW][XIX] 10.92 52.7; 47.83 4.87 -13.83 1.24 37.94
tRNA 3KFU 22!K:46!K G:G rH_1 [tWH][VII] 11.44 27.61; 30.79 3.18 164.88 0.17 8.01
tRNA 3KFU 26!K:44!K A:A Wb [cWW][-] 13.01 34.5; 56.79 22.3 0.78 1.06 37.05
tRNA 3KFU 27!K:43!K G:U Wb [cWW][XXVIII] 10.53 45.04; 63.83 18.79 -8.96 0.51 18.22
tRNA 3KFU 28!K:42!K C:G WC [cWW][XIX] 10.66 51.86; 57.51 5.65 -11.58 0.45 24.54
tRNA 3KFU 29!K:41!K C:G WC [cWW][XIX] 10.54 56.95; 55.02 1.94 -5.17 0.04 8.65
tRNA 3KFU 30!K:40!K G:C WC [cWW][XIX] 10.3 61.33; 58.13 3.2 -1.48 0.09 6.02
tRNA 3KFU 31!K:39!K G:C WC [cWW][XIX] 10.47 58.92; 51.76 7.16 15.9 0.04 18.92
tRNA 3KFU 32!K:38!K C:A Wb [cWW][-] 10.3 74.48; 35.03 39.45 -2.77 0.38 16.81
tRNA 3KFU 49!K:65!K G:C WC [cWW][XIX] 10.61 50.56; 61.01 10.45 22.99 0.92 16.75
tRNA 3KFU 50!K:64!K C:G WC [cWW][XIX] 10.82 44.98; 56.83 11.85 11.38 0.37 9.2
tRNA 3KFU 51!K:63!K A:U WC [cWW][XX] 10.7 48.29; 55.56 7.27 7.82 0.05 8.81
tRNA 3KFU 52!K:62!K G:C WC [cWW][XIX] 10.58 57.95; 54.49 3.47 -5.4 0.03 8.7
tRNA 3KFU 53!K:61!K G:C WC [cWW][XIX] 10.72 52.8; 55.74 2.94 -6.73 0.48 20.19
tRNA 3KFU 54!K:58!K U:A rH_1 [tWH][XXIV] 9.91 27.82; 23.03 4.79 161.35 0.81 17.68
tRNA 3KFU 55!K:57!K U:G S_PSU(sb:O2*-N7) [---][-] 6.72 93.44; 40.92 52.52 -179.31 2.13 28.93
tRNA 3KFU 1!L:72!L U:A WC [cWW][XX] 10.59 53.25; 57.7 4.44 -8.51 0.5 27.4
tRNA 3KFU 2!L:71!L C:G WC [cWW][XIX] 10.58 54.43; 56.54 2.11 -6.65 0.15 20.82
tRNA 3KFU 3!L:70!L C:G WC [cWW][XIX] 10.78 53.83; 56.57 2.74 -3.87 0.06 11.4
tRNA 3KFU 4!L:69!L G:C WC [cWW][XIX] 10.57 57.56; 54.8 2.77 -2.66 0.31 11.21
tRNA 3KFU 5!L:68!L C:G WC [cWW][XIX] 10.57 58.25; 60.12 1.88 -3.38 0.15 10.66
tRNA 3KFU 6!L:67!L G:C WC [cWW][XIX] 10.68 60.49; 55.33 5.15 -6.0 0.18 21.39
tRNA 3KFU 7!L:66!L G:C WC [cWW][XIX] 10.71 57.6; 59.62 2.03 4.86 0.17 8.86
tRNA 3KFU 8!L:21!L U:A fS(sb:O2*-N1) [tSW][-] 8.55 104.23; 55.77 48.46 157.85 0.18 23.02
tRNA 3KFU 8!L:14!L U:A rH_1 [tWH][XXIV] 9.5 34.53; 20.19 14.34 177.52 0.41 9.53
tRNA 3KFU 9!L:23!L A:A rS* [tHH][-] 10.57 21.86; 25.82 3.95 71.53 1.6 36.99
tRNA 3KFU 10!L:45!L G:G pS_1 [cSH][-] 9.28 41.66; 117.24 75.57 -6.81 0.61 28.28
tRNA 3KFU 10!L:25!L G:C WC [cWW][XIX] 10.69 47.57; 55.6 8.03 -5.58 0.25 14.25
tRNA 3KFU 11!L:24!L C:G WC [cWW][XIX] 10.52 55.48; 54.39 1.09 -9.42 0.75 20.2
tRNA 3KFU 12!L:23!L U:A WC [cWW][XX] 10.73 54.01; 51.94 2.07 12.79 0.88 21.2
tRNA 3KFU 13!L:22!L C:G WC [cWW][XIX] 10.6 54.15; 57.82 3.68 -0.47 0.19 5.18
tRNA 3KFU 14!L:21!L A:A pfS [cSW][-] 10.35 30.75; 111.49 80.74 -17.48 0.7 16.49
tRNA 3KFU 15!L:48!L G:C rWb [tWW][XXII] 10.79 39.15; 57.04 17.88 -166.71 0.2 9.22
tRNA 3KFU 18!L:55!L G:U fS_PSU [---][-] 8.79 31.18; 123.47 92.3 -138.33 0.15 19.07
tRNA 3KFU 19!L:56!L G:C WC [cWW][XIX] 10.92 52.71; 47.78 4.93 -13.75 1.24 37.96
tRNA 3KFU 22!L:46!L G:G rH_1 [tWH][VII] 11.44 27.71; 30.79 3.08 165.66 0.18 7.46
tRNA 3KFU 26!L:44!L A:A Wb [cWW][-] 13.0 34.54; 56.73 22.2 1.15 1.1 36.77
tRNA 3KFU 27!L:43!L G:U Wb [cWW][XXVIII] 10.52 44.9; 63.59 18.69 -8.79 0.52 17.93
tRNA 3KFU 28!L:42!L C:G WC [cWW][XIX] 10.66 51.95; 57.39 5.44 -11.51 0.45 24.56
tRNA 3KFU 29!L:41!L C:G WC [cWW][XIX] 10.54 56.76; 54.72 2.03 -4.66 0.05 8.54
tRNA 3KFU 30!L:40!L G:C WC [cWW][XIX] 10.3 61.18; 57.92 3.27 -1.65 0.1 5.62
tRNA 3KFU 31!L:39!L G:C WC [cWW][XIX] 10.47 58.92; 51.89 7.03 16.27 0.06 18.13
tRNA 3KFU 32!L:38!L C:A Wb [cWW][-] 10.31 74.46; 35.05 39.41 -2.17 0.38 16.94
tRNA 3KFU 49!L:65!L G:C WC [cWW][XIX] 10.6 50.77; 61.14 10.37 23.01 0.9 16.36
tRNA 3KFU 50!L:64!L C:G WC [cWW][XIX] 10.82 45.09; 56.78 11.69 11.72 0.35 9.21
tRNA 3KFU 51!L:63!L A:U WC [cWW][XX] 10.7 48.24; 55.46 7.22 8.29 0.05 8.55
tRNA 3KFU 52!L:62!L G:C WC [cWW][XIX] 10.58 57.97; 54.69 3.28 -5.4 0.03 9.0
tRNA 3KFU 53!L:61!L G:C WC [cWW][XIX] 10.73 52.9; 55.8 2.9 -6.76 0.49 20.6
tRNA 3KFU 54!L:58!L U:A rH_1 [tWH][XXIV] 9.9 28.14; 22.89 5.26 161.4 0.77 16.86
tRNA 3KFU 55!L:57!L U:G S_PSU(sb:O2*-N7) [---][-] 6.7 88.33; 40.77 47.57 -175.56 1.86 28.5
tRNA 3KFU 1!M:72!M U:A WC [cWW][XX] 11.71 48.4; 51.36 2.96 -2.91 0.26 7.85
tRNA 3KFU 2!M:71!M C:G WC [cWW][XIX] 10.98 51.68; 53.19 1.51 -12.18 0.38 18.42
tRNA 3KFU 3!M:70!M C:G WC [cWW][XIX] 10.78 51.83; 55.77 3.95 -14.23 0.21 13.81
tRNA 3KFU 4!M:69!M G:C WC [cWW][XIX] 10.84 51.71; 53.56 1.85 -9.13 0.06 17.13
tRNA 3KFU 5!M:68!M C:G WC [cWW][XIX] 11.04 42.75; 56.2 13.46 -13.37 0.03 17.79
tRNA 3KFU 6!M:67!M G:C WC [cWW][XIX] 10.53 46.88; 59.12 12.24 -12.38 0.31 16.49
tRNA 3KFU 7!M:66!M G:C WC [cWW][XIX] 11.18 54.97; 52.48 2.49 -0.02 0.25 7.47
tRNA 3KFU 8!M:21!M U:A fS(sb:O2*-N1) [tSW][-] 8.62 107.7; 47.42 60.27 165.56 0.12 13.55
tRNA 3KFU 8!M:14!M U:A rH_1 [tWH][XXIV] 9.75 33.68; 19.67 14.02 -174.76 0.03 4.42
tRNA 3KFU 9!M:23!M A:A rS* [tHH][-] 10.89 16.3; 25.16 8.87 76.24 1.08 32.57
tRNA 3KFU 10!M:45!M G:G pS_1 [cSH][-] 9.29 37.69; 114.47 76.77 -39.4 1.42 35.61
tRNA 3KFU 10!M:25!M G:C WC [cWW][XIX] 10.41 50.19; 54.96 4.76 19.75 1.12 9.05
tRNA 3KFU 11!M:24!M C:G WC [cWW][XIX] 10.52 46.11; 47.45 1.34 33.49 1.11 20.45
tRNA 3KFU 12!M:23!M U:A WC [cWW][XX] 11.01 42.77; 45.13 2.36 28.77 1.39 15.21
tRNA 3KFU 13!M:23!M C:A Wb [cWW][-] 9.82 66.83; 44.96 21.87 8.0 1.63 36.86
tRNA 3KFU 13!M:22!M C:G WC [cWW][XIX] 10.75 56.19; 46.21 9.98 24.48 0.69 23.22
tRNA 3KFU 15!M:48!M G:C rWb [tWW][XXII] 11.06 29.0; 56.8 27.81 -160.43 0.55 15.93
tRNA 3KFU 18!M:55!M G:U fS_PSU [---][-] 8.81 31.65; 120.94 89.29 -134.52 0.9 31.68
tRNA 3KFU 19!M:56!M G:C WC [cWW][XIX] 11.34 51.03; 50.56 0.47 -15.57 1.02 48.16
tRNA 3KFU 22!M:46!M G:G rH_1 [tWH][VII] 11.25 40.28; 29.01 11.27 167.86 0.05 7.69
tRNA 3KFU 26!M:44!M A:A Wb [cWW][-] 12.16 46.59; 61.58 14.98 24.64 0.16 36.35
tRNA 3KFU 27!M:43!M G:U Wb [cWW][XXVIII] 10.5 44.78; 66.99 22.2 -9.21 0.07 19.45
tRNA 3KFU 28!M:42!M C:G WC [cWW][XIX] 10.64 52.15; 60.38 8.23 -8.07 0.12 23.94
tRNA 3KFU 29!M:41!M C:G WC [cWW][XIX] 10.48 56.95; 55.48 1.47 -1.57 0.62 12.6
tRNA 3KFU 30!M:40!M G:C WC [cWW][XIX] 10.37 62.44; 55.91 6.53 1.45 0.16 19.2
tRNA 3KFU 31!M:39!M G:C WC [cWW][XIX] 10.54 57.22; 52.27 4.95 19.01 0.49 23.18
tRNA 3KFU 32!M:38!M C:A Wb [cWW][-] 10.5 68.26; 39.35 28.9 1.47 0.11 18.07
tRNA 3KFU 49!M:65!M G:C WC [cWW][XIX] 10.81 49.67; 50.9 1.23 23.14 1.11 14.96
tRNA 3KFU 50!M:64!M C:G WC [cWW][XIX] 10.73 47.2; 55.21 8.0 16.35 0.07 17.43
tRNA 3KFU 51!M:63!M A:U WC [cWW][XX] 10.67 49.11; 53.99 4.88 14.0 0.63 16.77
tRNA 3KFU 52!M:62!M G:C WC [cWW][XIX] 10.51 54.69; 51.96 2.73 22.39 0.29 34.84
tRNA 3KFU 53!M:61!M G:C WC [cWW][XIX] 10.65 53.04; 53.56 0.52 15.11 0.97 43.51
tRNA 3KFU 54!M:58!M U:A rH_1 [tWH][XXIV] 9.85 28.58; 23.56 5.02 160.8 0.35 24.42
tRNA 3KFU 55!M:57!M U:G S_PSU(sb:O2*-N7) [---][-] 6.86 89.85; 37.75 52.09 -175.14 0.97 33.16
tRNA 3KFU 1!N:72!N U:A WC [cWW][XX] 11.71 48.45; 51.32 2.87 -3.17 0.24 7.98
tRNA 3KFU 2!N:71!N C:G WC [cWW][XIX] 10.98 51.72; 53.41 1.69 -12.56 0.36 18.23
tRNA 3KFU 3!N:70!N C:G WC [cWW][XIX] 10.78 51.77; 55.75 3.97 -14.4 0.23 14.1
tRNA 3KFU 4!N:69!N G:C WC [cWW][XIX] 10.84 51.61; 53.69 2.07 -9.17 0.07 16.92
tRNA 3KFU 5!N:68!N C:G WC [cWW][XIX] 11.04 42.71; 56.17 13.46 -13.45 0.02 17.95
tRNA 3KFU 6!N:67!N G:C WC [cWW][XIX] 10.53 46.86; 59.16 12.3 -12.23 0.28 16.37
tRNA 3KFU 7!N:66!N G:C WC [cWW][XIX] 11.18 54.89; 52.47 2.42 -0.01 0.25 7.46
tRNA 3KFU 8!N:21!N U:A fS(sb:O2*-N1) [tSW][-] 8.62 107.56; 47.34 60.22 165.71 0.11 13.67
tRNA 3KFU 8!N:14!N U:A rH_1 [tWH][XXIV] 9.76 33.59; 19.69 13.91 -174.93 0.06 4.81
tRNA 3KFU 9!N:23!N A:A rS* [tHH][-] 10.89 16.25; 25.16 8.9 77.28 1.06 32.3
tRNA 3KFU 10!N:45!N G:G pS_1 [cSH][-] 9.29 37.86; 114.39 76.53 -39.41 1.41 35.45
tRNA 3KFU 10!N:25!N G:C WC [cWW][XIX] 10.41 50.02; 54.78 4.76 19.75 1.08 9.05
tRNA 3KFU 11!N:24!N C:G WC [cWW][XIX] 10.52 46.02; 47.46 1.45 33.58 1.09 20.52
tRNA 3KFU 12!N:23!N U:A WC [cWW][XX] 11.01 42.68; 45.03 2.35 28.86 1.37 15.16
tRNA 3KFU 13!N:23!N C:A Wb [cWW][-] 9.82 66.84; 44.9 21.94 7.83 1.66 36.65
tRNA 3KFU 13!N:22!N C:G WC [cWW][XIX] 10.75 56.2; 46.14 10.06 24.47 0.68 23.16
tRNA 3KFU 15!N:48!N G:C rWb [tWW][XXII] 11.06 29.05; 56.73 27.67 -160.44 0.56 15.95
tRNA 3KFU 18!N:55!N G:U fS_PSU [---][-] 8.81 31.61; 120.92 89.31 -134.5 0.89 31.59
tRNA 3KFU 19!N:56!N G:C WC [cWW][XIX] 11.33 51.1; 50.51 0.6 -15.71 1.03 48.17
tRNA 3KFU 22!N:46!N G:G rH_1 [tWH][VII] 11.24 40.35; 28.97 11.38 167.93 0.05 7.78
tRNA 3KFU 26!N:44!N A:A Wb [cWW][-] 12.16 46.67; 61.48 14.81 24.65 0.14 36.36
tRNA 3KFU 27!N:43!N G:U Wb [cWW][XXVIII] 10.5 44.51; 66.95 22.44 -9.39 0.04 20.03
tRNA 3KFU 28!N:42!N C:G WC [cWW][XIX] 10.63 52.13; 60.31 8.19 -8.23 0.13 23.84
tRNA 3KFU 29!N:41!N C:G WC [cWW][XIX] 10.48 56.9; 55.42 1.48 -1.46 0.63 12.74
tRNA 3KFU 30!N:40!N G:C WC [cWW][XIX] 10.37 62.54; 55.75 6.79 1.31 0.17 19.79
tRNA 3KFU 31!N:39!N G:C WC [cWW][XIX] 10.54 57.19; 52.33 4.86 19.12 0.5 22.98
tRNA 3KFU 32!N:38!N C:A Wb [cWW][-] 10.5 68.28; 39.37 28.9 1.36 0.11 17.95
tRNA 3KFU 49!N:65!N G:C WC [cWW][XIX] 10.81 49.64; 50.97 1.33 23.42 1.1 15.0
tRNA 3KFU 50!N:64!N C:G WC [cWW][XIX] 10.73 47.25; 55.17 7.92 16.44 0.07 17.26
tRNA 3KFU 51!N:63!N A:U WC [cWW][XX] 10.66 49.16; 53.97 4.81 13.99 0.63 16.71
tRNA 3KFU 52!N:62!N G:C WC [cWW][XIX] 10.51 54.62; 51.96 2.67 22.3 0.29 34.68
tRNA 3KFU 53!N:61!N G:C WC [cWW][XIX] 10.66 53.11; 53.56 0.45 15.27 0.96 43.5
tRNA 3KFU 54!N:58!N U:A rH_1 [tWH][XXIV] 9.85 28.6; 23.5 5.09 160.84 0.32 24.09
tRNA 3KFU 55!N:57!N U:G S_PSU(sb:O2*-N7) [---][-] 6.86 89.76; 37.8 51.97 -175.19 0.97 33.14