Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3KTW
BPC Identified: 86
Ambiguities: 1
| SRP_RNA |
3KTW |
142!C:236!C |
G:C |
WC_Mo [cWW][XIX] |
10.32 |
66.33; 66.1 |
0.22 |
-6.98 |
0.09 |
12.37 |
| SRP_RNA |
3KTW |
143!C:235!C |
A:U |
Wb* [---][-] |
10.61 |
68.77; 48.22 |
20.56 |
-12.19 |
0.1 |
21.94 |
| SRP_RNA |
3KTW |
146!C:231!C |
G:G |
Wb [---][-] |
13.79 |
40.5; 13.41 |
27.09 |
4.14 |
0.78 |
16.13 |
| SRP_RNA |
3KTW |
147!C:185!C |
U:U |
Wb [cWW][XVI] |
8.28 |
44.17; 75.67 |
31.49 |
-19.97 |
0.62 |
29.0 |
| SRP_RNA |
3KTW |
148!C:184!C |
C:G |
WC [cWW][XIX] |
11.22 |
53.6; 62.05 |
8.45 |
-3.83 |
0.39 |
16.25 |
| SRP_RNA |
3KTW |
149!C:183!C |
G:C |
WC [cWW][XIX] |
11.26 |
50.75; 44.26 |
6.49 |
-13.62 |
0.26 |
9.95 |
| SRP_RNA |
3KTW |
151!C:181!C |
G:C |
WC [cWW][XIX] |
10.21 |
56.79; 43.61 |
13.19 |
-14.34 |
0.6 |
54.09 |
| SRP_RNA |
3KTW |
152!C:180!C |
G:C |
Wb* [---][-] |
11.27 |
62.23; 42.83 |
19.4 |
-19.23 |
0.25 |
26.79 |
| SRP_RNA |
3KTW |
153!C:178!C |
G:U |
Wb [cWW][XXVIII] |
9.9 |
38.07; 71.53 |
33.46 |
-23.97 |
1.28 |
24.05 |
| SRP_RNA |
3KTW |
154!C:177!C |
U:A |
WC [cWW][XX] |
10.38 |
59.81; 48.29 |
11.52 |
-17.89 |
0.98 |
29.9 |
| SRP_RNA |
3KTW |
155!C:176!C |
U:A |
WC [cWW][XX] |
10.44 |
53.55; 58.95 |
5.4 |
-12.31 |
0.51 |
14.1 |
| SRP_RNA |
3KTW |
156!C:175!C |
C:G |
WC [cWW][XIX] |
10.5 |
55.32; 55.3 |
0.02 |
-17.23 |
0.37 |
18.79 |
| SRP_RNA |
3KTW |
157!C:174!C |
C:G |
WC [cWW][XIX] |
11.21 |
53.81; 58.46 |
4.65 |
-6.33 |
0.21 |
12.64 |
| SRP_RNA |
3KTW |
158!C:173!C |
C:G |
WC [cWW][XIX] |
10.87 |
51.03; 51.93 |
0.9 |
-2.29 |
0.31 |
8.71 |
| SRP_RNA |
3KTW |
159!C:172!C |
U:A |
WC [cWW][XX] |
10.54 |
58.67; 60.22 |
1.55 |
-2.6 |
0.36 |
11.43 |
| SRP_RNA |
3KTW |
160!C:171!C |
U:G |
Wb [cWW][XXVIII] |
10.11 |
64.69; 47.97 |
16.71 |
-8.08 |
0.33 |
12.1 |
| SRP_RNA |
3KTW |
161!C:170!C |
U:A |
WC [cWW][XX] |
10.26 |
54.36; 56.87 |
2.51 |
2.61 |
0.32 |
9.18 |
| SRP_RNA |
3KTW |
162!C:169!C |
C:G |
WC [cWW][XIX] |
10.59 |
52.51; 51.0 |
1.5 |
5.56 |
0.38 |
11.12 |
| SRP_RNA |
3KTW |
163!C:168!C |
U:G |
Wb [cWW][XXVIII] |
10.48 |
66.84; 38.91 |
27.93 |
7.15 |
0.35 |
9.24 |
| SRP_RNA |
3KTW |
166!C:213!C |
A:A |
rWb* [tWW][I] |
13.75 |
27.38; 20.25 |
7.13 |
159.05 |
0.55 |
26.24 |
| SRP_RNA |
3KTW |
166!C:209!C |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.58 |
95.61; 138.93 |
43.32 |
-20.87 |
0.04 |
24.8 |
| SRP_RNA |
3KTW |
167!C:215!C |
G:G |
rS(sb:O2*-N3) [---][-] |
4.76 |
89.07; 102.39 |
13.32 |
-144.17 |
1.06 |
25.95 |
| SRP_RNA |
3KTW |
167!C:214!C |
G:G |
rS [tSS][IV] |
8.3 |
76.08; 75.89 |
0.18 |
-158.89 |
0.36 |
22.75 |
| SRP_RNA |
3KTW |
190!C:230!C |
C:G |
WC [cWW][XIX] |
10.13 |
53.39; 53.71 |
0.32 |
-6.84 |
0.18 |
32.46 |
| SRP_RNA |
3KTW |
191!C:229!C |
G:C |
Wb [---][-] |
10.05 |
46.91; 64.73 |
17.82 |
-0.42 |
0.14 |
8.75 |
| SRP_RNA |
3KTW |
192!C:228!C |
G:C |
WC [cWW][XIX] |
10.71 |
57.65; 58.68 |
1.03 |
-18.1 |
0.26 |
23.99 |
| SRP_RNA |
3KTW |
193!C:227!C |
G:C |
WC [cWW][XIX] |
10.46 |
55.68; 51.92 |
3.75 |
-4.69 |
0.16 |
17.42 |
| SRP_RNA |
3KTW |
194!C:226!C |
G:G |
S_1 [tSH][-] |
11.38 |
73.38; 14.76 |
58.61 |
80.98 |
0.7 |
32.96 |
| SRP_RNA |
3KTW |
195!C:224!C |
G:G |
rH_1 [tWH][VII] |
10.97 |
39.98; 29.11 |
10.87 |
148.74 |
2.04 |
45.84 |
| SRP_RNA |
3KTW |
196!C:225!C |
A:U |
rH_1 [tWH][XXIV] |
10.45 |
8.76; 37.68 |
28.92 |
132.73 |
0.04 |
17.3 |
| SRP_RNA |
3KTW |
199!C:224!C |
C:G |
WC [cWW][XIX] |
10.64 |
46.82; 50.26 |
3.44 |
-16.0 |
0.03 |
19.39 |
| SRP_RNA |
3KTW |
200!C:223!C |
G:C |
WC [cWW][XIX] |
10.43 |
43.04; 51.63 |
8.59 |
-12.85 |
0.43 |
9.48 |
| SRP_RNA |
3KTW |
201!C:222!C |
G:C |
WC [cWW][XIX] |
10.77 |
54.23; 41.81 |
12.42 |
-10.89 |
0.22 |
11.89 |
| SRP_RNA |
3KTW |
202!C:221!C |
C:A |
sWb [---][-] |
10.98 |
77.68; 20.2 |
57.49 |
10.99 |
0.68 |
20.54 |
| SRP_RNA |
3KTW |
203!C:220!C |
C:A |
S [tSH][-] |
9.76 |
86.18; 2.86 |
83.32 |
-18.68 |
0.99 |
19.45 |
| SRP_RNA |
3KTW |
204!C:219!C |
A:C |
rH_1 [rWH][XXV] |
11.11 |
2.76; 23.44 |
20.68 |
-171.6 |
0.22 |
12.92 |
| SRP_RNA |
3KTW |
204!C:218!C |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.37 |
33.58; 61.23 |
27.65 |
148.68 |
2.28 |
16.6 |
| SRP_RNA |
3KTW |
205!C:218!C |
G:G |
S_2_mo [---][-] |
11.06 |
8.9; 83.02 |
74.12 |
136.75 |
0.08 |
13.0 |
| SRP_RNA |
3KTW |
206!C:217!C |
G:A |
WC [cWW][VIII] |
12.66 |
48.81; 49.89 |
1.08 |
-4.02 |
0.82 |
14.81 |
| SRP_RNA |
3KTW |
207!C:216!C |
C:G |
WC [cWW][XIX] |
11.12 |
47.18; 50.04 |
2.86 |
-5.37 |
0.36 |
13.68 |
| SRP_RNA |
3KTW |
208!C:215!C |
C:G |
WC [cWW][XIX] |
10.64 |
51.29; 49.69 |
1.6 |
-9.05 |
0.06 |
11.87 |
| SRP_RNA |
3KTW |
209!C:214!C |
C:G |
WC [cWW][XIX] |
10.47 |
52.8; 54.09 |
1.29 |
-1.03 |
0.26 |
6.16 |
| SRP_RNA |
3KTW |
210!C:213!C |
G:A |
S [tSH][XI] |
8.48 |
96.07; 15.77 |
80.29 |
-92.87 |
0.45 |
22.29 |
| SRP_RNA |
3KTW |
210!C:212!C |
G:A |
S(sb:O2*-N7) [---][-] |
7.11 |
87.19; 39.88 |
47.31 |
-164.69 |
2.44 |
33.3 |
| SRP_RNA |
3KTW |
142!D:235!D |
G:U |
WC_mo [---][-] |
12.1 |
37.61; 45.56 |
7.95 |
21.89 |
1.95 |
4.44 |
| SRP_RNA |
3KTW |
143!D:235!D |
A:U |
WC [cWW][XX] |
9.69 |
59.78; 59.82 |
0.04 |
-11.08 |
0.42 |
10.48 |
| SRP_RNA |
3KTW |
144!D:234!D |
U:A |
WC [cWW][XX] |
9.82 |
69.24; 57.51 |
11.72 |
-6.34 |
0.3 |
6.99 |
| SRP_RNA |
3KTW |
148!D:185!D |
C:U |
pfS [cSW][-] |
7.29 |
40.65; 135.21 |
94.57 |
-39.44 |
1.17 |
30.28 |
| SRP_RNA |
3KTW |
148!D:184!D |
C:G |
WC [cWW][XIX] |
10.2 |
57.5; 49.76 |
7.73 |
15.51 |
0.56 |
16.43 |
| SRP_RNA |
3KTW |
150!D:182!D |
U:A |
Wb [---][-] |
11.43 |
62.06; 46.45 |
15.61 |
-28.02 |
0.19 |
39.02 |
| SRP_RNA |
3KTW |
151!D:181!D |
G:C |
Wb* [---][-] |
11.05 |
64.25; 40.54 |
23.7 |
-10.28 |
0.22 |
19.7 |
| SRP_RNA |
3KTW |
152!D:180!D |
G:C |
WC [cWW][XIX] |
11.08 |
62.18; 54.89 |
7.29 |
-13.51 |
0.99 |
5.89 |
| SRP_RNA |
3KTW |
154!D:177!D |
U:A |
WC [cWW][XX] |
10.07 |
47.97; 59.49 |
11.52 |
-21.72 |
0.41 |
26.21 |
| SRP_RNA |
3KTW |
155!D:176!D |
U:A |
WC [cWW][XX] |
10.1 |
47.53; 51.6 |
4.07 |
-30.79 |
0.56 |
33.14 |
| SRP_RNA |
3KTW |
156!D:175!D |
C:G |
WC [cWW][XIX] |
10.62 |
51.93; 57.39 |
5.46 |
-20.43 |
0.22 |
25.72 |
| SRP_RNA |
3KTW |
157!D:174!D |
C:G |
WC [cWW][XIX] |
10.39 |
58.69; 46.78 |
11.91 |
-13.45 |
0.17 |
14.87 |
| SRP_RNA |
3KTW |
158!D:173!D |
C:G |
WC [cWW][XIX] |
10.66 |
51.76; 53.54 |
1.78 |
-10.16 |
0.21 |
10.93 |
| SRP_RNA |
3KTW |
159!D:172!D |
U:A |
WC [cWW][XX] |
10.26 |
57.6; 45.39 |
12.21 |
-10.87 |
0.11 |
13.74 |
| SRP_RNA |
3KTW |
160!D:171!D |
U:G |
Wb [cWW][XXVIII] |
10.39 |
61.51; 42.92 |
18.59 |
-8.6 |
0.14 |
7.65 |
| SRP_RNA |
3KTW |
161!D:170!D |
U:A |
WC [cWW][XX] |
10.43 |
53.18; 55.79 |
2.61 |
2.06 |
0.18 |
5.97 |
| SRP_RNA |
3KTW |
162!D:169!D |
C:G |
Wb [---][-] |
10.4 |
60.31; 47.1 |
13.22 |
5.59 |
0.08 |
3.89 |
| SRP_RNA |
3KTW |
163!D:168!D |
U:G |
Wb [cWW][XXVIII] |
10.32 |
65.01; 38.46 |
26.55 |
2.59 |
0.04 |
4.46 |
| SRP_RNA |
3KTW |
166!D:213!D |
A:A |
rWb* [tWW][I] |
14.07 |
26.18; 29.38 |
3.2 |
-174.57 |
0.33 |
26.14 |
| SRP_RNA |
3KTW |
166!D:209!D |
A:C |
rpS(sb:O2*-N3) [cSS][-] |
5.56 |
99.41; 134.62 |
35.2 |
-25.26 |
0.14 |
23.78 |
| SRP_RNA |
3KTW |
167!D:214!D |
G:G |
rS [tSS][IV] |
8.21 |
72.13; 73.81 |
1.68 |
-152.35 |
0.76 |
27.41 |
| SRP_RNA |
3KTW |
167!D:213!D |
G:A |
Wb_v [---][-] |
12.05 |
65.73; 30.77 |
34.96 |
-132.26 |
2.43 |
22.04 |
| SRP_RNA |
3KTW |
179!D:224!D |
U:G |
pfS*_1 [cWS][-] |
8.13 |
58.47; 114.43 |
55.96 |
-28.74 |
0.4 |
25.72 |
| SRP_RNA |
3KTW |
186!D:188!D |
U:A |
rS(sb:O2*-N1) [---][-] |
7.23 |
85.68; 64.62 |
21.06 |
-158.72 |
1.16 |
26.12 |
| SRP_RNA |
3KTW |
191!D:229!D |
G:C |
WC [cWW][XIX] |
10.79 |
45.66; 51.29 |
5.63 |
15.74 |
0.51 |
8.81 |
| SRP_RNA |
3KTW |
192!D:228!D |
G:C |
Wb [---][-] |
10.84 |
40.2; 54.85 |
14.65 |
-6.79 |
0.22 |
22.97 |
| SRP_RNA |
3KTW |
193!D:227!D |
G:C |
Wb* [---][-] |
10.83 |
61.96; 50.3 |
11.66 |
4.35 |
1.44 |
34.99 |
| SRP_RNA |
3KTW |
195!D:226!D |
G:G |
pS(sb:O2*-O6) [---][-] |
8.85 |
136.63; 24.65 |
111.98 |
-110.65 |
2.15 |
58.7 |
| SRP_RNA |
3KTW |
196!D:225!D |
A:U |
rH_1 [tWH][XXIV] |
9.19 |
30.89; 39.29 |
8.39 |
148.2 |
0.5 |
17.6 |
| SRP_RNA |
3KTW |
197!D:220!D |
A:A |
rS(sp:O2*-O1P) [---][-] |
8.19 |
163.25; 127.03 |
36.22 |
-166.67 |
0.11 |
30.5 |
| SRP_RNA |
3KTW |
199!D:224!D |
C:G |
WC [cWW][XIX] |
10.86 |
44.37; 49.49 |
5.12 |
-12.67 |
0.53 |
7.91 |
| SRP_RNA |
3KTW |
200!D:223!D |
G:C |
WC [cWW][XIX] |
10.47 |
45.24; 54.99 |
9.75 |
-21.5 |
0.24 |
20.73 |
| SRP_RNA |
3KTW |
201!D:222!D |
G:C |
WC [cWW][XIX] |
10.75 |
42.79; 48.27 |
5.47 |
-19.43 |
0.15 |
22.33 |
| SRP_RNA |
3KTW |
202!D:221!D |
C:A |
sWb [---][-] |
11.2 |
66.69; 23.47 |
43.22 |
-22.5 |
0.79 |
27.1 |
| SRP_RNA |
3KTW |
203!D:220!D |
C:A |
S [tSH][-] |
9.61 |
76.39; 10.02 |
66.37 |
-152.8 |
1.19 |
15.87 |
| SRP_RNA |
3KTW |
203!D:219!D |
C:C |
rH_2 [tWH][-] |
9.5 |
49.75; 22.64 |
27.12 |
159.52 |
0.58 |
11.92 |
| SRP_RNA |
3KTW |
204!D:219!D |
A:C |
rH_1 [rWH][XXV] |
11.25 |
9.39; 19.22 |
9.83 |
-176.41 |
0.37 |
7.63 |
| SRP_RNA |
3KTW |
206!D:217!D |
G:A |
WC [cWW][VIII] |
12.72 |
38.75; 48.1 |
9.35 |
-8.48 |
0.08 |
18.51 |
| SRP_RNA |
3KTW |
207!D:216!D |
C:G |
WC [cWW][XIX] |
10.79 |
45.11; 51.21 |
6.1 |
-12.16 |
0.02 |
11.03 |
| SRP_RNA |
3KTW |
208!D:215!D |
C:G |
WC [cWW][XIX] |
10.6 |
52.84; 50.4 |
2.44 |
-7.95 |
0.07 |
10.83 |
| SRP_RNA |
3KTW |
209!D:214!D |
C:G |
WC [cWW][XIX] |
10.58 |
56.17; 51.9 |
4.28 |
1.66 |
0.11 |
5.47 |
| SRP_RNA |
3KTW |
210!D:213!D |
G:A |
S [tSH][XI] |
9.1 |
99.49; 10.89 |
88.6 |
-38.4 |
0.13 |
17.7 |
| SRP_RNA |
3KTW |
210!D:212!D |
G:A |
S(sb:O2*-N7) [---][-] |
7.47 |
91.45; 40.95 |
50.49 |
-168.49 |
2.34 |
30.87 |