Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3L0U
BPC Identified: 31
Ambiguities: 0
| tRNA |
3L0U |
1!A:72!A |
G:C |
WC [cWW][XIX] |
10.87 |
51.48; 51.68 |
0.2 |
-4.7 |
0.13 |
7.2 |
| tRNA |
3L0U |
2!A:71!A |
C:G |
WC [cWW][XIX] |
10.78 |
51.5; 57.44 |
5.94 |
-6.62 |
0.02 |
11.17 |
| tRNA |
3L0U |
3!A:70!A |
G:C |
WC [cWW][XIX] |
10.64 |
55.65; 56.63 |
0.98 |
-7.83 |
0.06 |
14.01 |
| tRNA |
3L0U |
4!A:69!A |
C:G |
WC [cWW][XIX] |
10.5 |
53.86; 56.85 |
2.99 |
-11.46 |
0.13 |
20.23 |
| tRNA |
3L0U |
5!A:68!A |
G:C |
WC [cWW][XIX] |
10.64 |
53.88; 55.3 |
1.42 |
-5.31 |
0.12 |
6.85 |
| tRNA |
3L0U |
6!A:67!A |
G:C |
WC [cWW][XIX] |
10.71 |
58.68; 52.41 |
6.27 |
-8.24 |
0.42 |
19.61 |
| tRNA |
3L0U |
7!A:66!A |
A:U |
WC [cWW][XX] |
10.71 |
51.61; 52.43 |
0.81 |
1.96 |
0.1 |
5.01 |
| tRNA |
3L0U |
8!A:14!A |
U:A |
rH_1 [tWH][XXIV] |
9.67 |
28.04; 23.52 |
4.52 |
177.04 |
0.43 |
11.06 |
| tRNA |
3L0U |
9!A:23!A |
A:A |
rS* [tHH][-] |
11.18 |
15.99; 15.31 |
0.68 |
144.01 |
0.18 |
8.42 |
| tRNA |
3L0U |
10!A:44!A |
G:G |
H_1 [cWH][VI] |
11.54 |
33.72; 64.95 |
31.23 |
-3.18 |
0.29 |
12.37 |
| tRNA |
3L0U |
10!A:25!A |
G:C |
WC [cWW][XIX] |
10.62 |
48.71; 57.59 |
8.87 |
-4.53 |
0.41 |
14.04 |
| tRNA |
3L0U |
11!A:24!A |
C:G |
WC [cWW][XIX] |
10.57 |
56.54; 48.92 |
7.61 |
-8.19 |
0.6 |
20.46 |
| tRNA |
3L0U |
12!A:23!A |
U:A |
WC [cWW][XX] |
10.96 |
51.57; 48.76 |
2.81 |
-4.28 |
0.13 |
9.4 |
| tRNA |
3L0U |
13!A:22!A |
C:G |
WC [cWW][XIX] |
10.87 |
51.19; 50.97 |
0.22 |
-5.01 |
0.15 |
10.04 |
| tRNA |
3L0U |
15!A:48!A |
G:C |
rWb [tWW][XXII] |
10.48 |
32.78; 61.67 |
28.89 |
-176.57 |
0.01 |
2.19 |
| tRNA |
3L0U |
18!A:55!A |
G:U |
fS_1 [tSW][-] |
8.87 |
26.39; 105.16 |
78.76 |
-137.8 |
0.74 |
35.31 |
| tRNA |
3L0U |
19!A:56!A |
G:C |
WC [cWW][XIX] |
11.49 |
57.42; 46.17 |
11.25 |
-0.06 |
0.39 |
13.54 |
| tRNA |
3L0U |
22!A:46!A |
G:G |
rH_1 [tWH][VII] |
11.55 |
29.94; 35.44 |
5.49 |
-170.72 |
0.23 |
6.34 |
| tRNA |
3L0U |
27!A:43!A |
G:C |
WC [cWW][XIX] |
10.73 |
54.9; 53.65 |
1.25 |
-6.1 |
0.26 |
10.99 |
| tRNA |
3L0U |
28!A:42!A |
G:C |
WC [cWW][XIX] |
10.57 |
53.06; 53.5 |
0.44 |
-3.04 |
0.01 |
17.11 |
| tRNA |
3L0U |
29!A:41!A |
G:C |
WC [cWW][XIX] |
10.73 |
55.07; 51.25 |
3.82 |
-2.2 |
0.48 |
14.54 |
| tRNA |
3L0U |
30!A:40!A |
G:C |
WC [cWW][XIX] |
10.56 |
56.82; 54.79 |
2.03 |
-6.73 |
0.43 |
19.98 |
| tRNA |
3L0U |
31!A:39!A |
A:U |
WC [cWW][XX] |
10.64 |
54.91; 52.48 |
2.44 |
-7.45 |
0.66 |
18.65 |
| tRNA |
3L0U |
33!A:35!A |
U:A |
S(sb:O2*-N7) [---][-] |
6.53 |
80.49; 41.67 |
38.82 |
-176.55 |
1.45 |
22.0 |
| tRNA |
3L0U |
49!A:65!A |
C:G |
WC [cWW][XIX] |
10.93 |
50.34; 52.4 |
2.07 |
-2.67 |
0.21 |
8.33 |
| tRNA |
3L0U |
50!A:64!A |
U:A |
WC [cWW][XX] |
10.84 |
50.23; 53.79 |
3.57 |
-0.75 |
0.04 |
2.7 |
| tRNA |
3L0U |
51!A:63!A |
U:G |
Wb [cWW][XXVIII] |
10.66 |
65.6; 46.43 |
19.17 |
1.36 |
0.01 |
6.84 |
| tRNA |
3L0U |
52!A:62!A |
G:C |
WC [cWW][XIX] |
11.32 |
49.72; 47.2 |
2.52 |
-10.56 |
0.11 |
25.82 |
| tRNA |
3L0U |
53!A:61!A |
G:C |
WC [cWW][XIX] |
10.63 |
59.59; 52.92 |
6.67 |
-5.28 |
0.44 |
14.75 |
| tRNA |
3L0U |
54!A:58!A |
U:A |
rH_1 [tWH][XXIV] |
9.66 |
33.49; 21.24 |
12.25 |
176.16 |
0.25 |
6.51 |
| tRNA |
3L0U |
55!A:57!A |
U:G |
S(sb:O2*-N7)_1 [---][-] |
6.43 |
76.17; 35.61 |
40.56 |
-171.01 |
0.62 |
39.83 |