Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3LQX
BPC Identified: 24
Ambiguities: 0
| SRP_RNA |
3LQX |
130!B:178!B |
G:C |
WC [cWW][XIX] |
10.79 |
52.61; 53.56 |
0.95 |
-6.6 |
0.83 |
8.43 |
| SRP_RNA |
3LQX |
131!B:177!B |
G:C |
WC [cWW][XIX] |
10.64 |
53.66; 56.21 |
2.55 |
-11.39 |
0.17 |
16.82 |
| SRP_RNA |
3LQX |
132!B:176!B |
C:G |
WC [cWW][XIX] |
10.68 |
55.13; 53.31 |
1.82 |
-8.51 |
0.03 |
14.02 |
| SRP_RNA |
3LQX |
133!B:175!B |
U:A |
WC [cWW][XX] |
10.3 |
58.02; 57.49 |
0.53 |
-15.48 |
0.08 |
19.28 |
| SRP_RNA |
3LQX |
134!B:174!B |
C:G |
WC [cWW][XIX] |
10.66 |
54.74; 53.27 |
1.47 |
-10.03 |
0.05 |
12.81 |
| SRP_RNA |
3LQX |
135!B:173!B |
U:A |
WC [cWW][XX] |
10.62 |
54.23; 55.19 |
0.96 |
-10.02 |
0.12 |
12.24 |
| SRP_RNA |
3LQX |
136!B:172!B |
G:C |
WC [cWW][XIX] |
10.73 |
54.2; 53.84 |
0.36 |
-10.77 |
0.01 |
14.52 |
| SRP_RNA |
3LQX |
137!B:171!B |
U:G |
Wb [cWW][XXVIII] |
10.31 |
68.65; 44.06 |
24.59 |
-18.8 |
0.32 |
18.28 |
| SRP_RNA |
3LQX |
138!B:170!B |
U:G |
Wb [cWW][XXVIII] |
10.29 |
67.58; 42.47 |
25.11 |
-16.2 |
0.12 |
22.15 |
| SRP_RNA |
3LQX |
139!B:169!B |
U:A |
WC [cWW][XX] |
10.65 |
54.06; 55.1 |
1.04 |
-5.7 |
0.03 |
8.21 |
| SRP_RNA |
3LQX |
140!B:164!B |
A:A |
rS(sp:O2*-O1P) [---][-] |
9.54 |
158.88; 122.1 |
36.78 |
90.72 |
0.64 |
59.53 |
| SRP_RNA |
3LQX |
144!B:167!B |
G:C |
WC [cWW][XIX] |
10.58 |
53.99; 57.48 |
3.49 |
-1.33 |
0.21 |
10.79 |
| SRP_RNA |
3LQX |
145!B:166!B |
G:C |
WC [cWW][XIX] |
10.57 |
54.33; 55.65 |
1.33 |
-8.03 |
0.71 |
19.16 |
| SRP_RNA |
3LQX |
146!B:165!B |
U:G |
Wb [cWW][XXVIII] |
10.57 |
66.45; 37.87 |
28.57 |
-5.54 |
0.1 |
10.3 |
| SRP_RNA |
3LQX |
147!B:164!B |
C:A |
S [tSH][-] |
9.5 |
86.6; 3.94 |
82.66 |
-42.99 |
0.04 |
5.4 |
| SRP_RNA |
3LQX |
148!B:163!B |
A:C |
rH_1 [rWH][XXV] |
11.0 |
8.38; 24.95 |
16.57 |
-162.85 |
0.51 |
19.48 |
| SRP_RNA |
3LQX |
148!B:162!B |
A:G |
S(bp:N1-O2P)_2 [---][-] |
12.25 |
38.95; 65.87 |
26.92 |
166.01 |
1.15 |
17.05 |
| SRP_RNA |
3LQX |
149!B:162!B |
G:G |
S_1 [tSH][-] |
11.68 |
10.85; 84.62 |
73.78 |
-10.25 |
0.02 |
5.76 |
| SRP_RNA |
3LQX |
150!B:161!B |
G:A |
WC [cWW][VIII] |
12.62 |
47.25; 48.81 |
1.55 |
3.6 |
0.0 |
13.54 |
| SRP_RNA |
3LQX |
151!B:160!B |
U:A |
WC [cWW][XX] |
10.71 |
53.3; 53.49 |
0.19 |
-3.28 |
0.68 |
16.95 |
| SRP_RNA |
3LQX |
152!B:159!B |
C:G |
WC [cWW][XIX] |
10.45 |
56.22; 54.66 |
1.55 |
-4.13 |
0.32 |
16.05 |
| SRP_RNA |
3LQX |
153!B:158!B |
C:G |
WC [cWW][XIX] |
10.62 |
56.76; 54.99 |
1.78 |
4.42 |
0.24 |
0.89 |
| SRP_RNA |
3LQX |
154!B:157!B |
G:A |
S [tSH][XI] |
9.0 |
99.53; 11.47 |
88.07 |
-80.6 |
0.75 |
13.6 |
| SRP_RNA |
3LQX |
154!B:156!B |
G:A |
S(sb:O2*-N7) [---][-] |
7.57 |
91.41; 38.27 |
53.13 |
-172.86 |
2.7 |
26.14 |