Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3LWV
BPC Identified: 29
Ambiguities: 0
gRNA |
3LWV |
1!D:54!D |
G:C |
WC [cWW][XIX] |
11.08 |
45.25; 53.26 |
8.0 |
-8.78 |
0.25 |
17.3 |
gRNA |
3LWV |
2!D:53!D |
G:C |
WC [cWW][XIX] |
10.78 |
53.43; 54.15 |
0.72 |
-8.98 |
0.03 |
11.85 |
gRNA |
3LWV |
3!D:52!D |
G:C |
WC [cWW][XIX] |
10.81 |
51.24; 53.37 |
2.14 |
-10.28 |
0.04 |
15.38 |
gRNA |
3LWV |
4!D:51!D |
C:G |
WC [cWW][XIX] |
10.85 |
53.56; 52.73 |
0.83 |
-11.99 |
0.23 |
18.14 |
gRNA |
3LWV |
5!D:50!D |
C:G |
WC [cWW][XIX] |
10.93 |
53.38; 55.37 |
1.99 |
-9.06 |
0.07 |
10.73 |
gRNA |
3LWV |
6!D:49!D |
A:U |
WC [cWW][XX] |
10.68 |
55.15; 53.17 |
1.98 |
-9.44 |
0.27 |
16.37 |
gRNA |
3LWV |
7!D:48!D |
C:G |
WC [cWW][XIX] |
10.87 |
53.9; 49.97 |
3.93 |
-9.73 |
0.3 |
22.63 |
gRNA |
3LWV |
8!D:47!D |
G:C |
WC [cWW][XIX] |
10.45 |
55.51; 56.24 |
0.73 |
-7.35 |
0.2 |
12.76 |
gRNA |
3LWV |
9!D:46!D |
G:C |
WC [cWW][XIX] |
10.88 |
55.47; 48.29 |
7.18 |
-10.04 |
0.18 |
12.01 |
gRNA |
3LWV |
10!D:17!E |
A:U |
WC [cWW][XX] |
11.28 |
57.66; 51.17 |
6.49 |
13.21 |
0.48 |
35.73 |
gRNA |
3LWV |
11!D:17!E |
A:U |
Wb* [---][-] |
9.35 |
78.23; 57.86 |
20.38 |
0.53 |
0.62 |
27.62 |
gRNA |
3LWV |
11!D:16!E |
A:U |
WC [cWW][XX] |
10.88 |
60.11; 49.05 |
11.06 |
0.42 |
0.42 |
14.7 |
gRNA |
3LWV |
12!D:15!E |
A:U |
WC [cWW][XX] |
11.82 |
53.47; 39.79 |
13.69 |
-5.76 |
0.0 |
9.09 |
gRNA |
3LWV |
13!D:14!E |
C:G |
WC [cWW][XIX] |
10.61 |
52.38; 58.07 |
5.69 |
-8.5 |
0.4 |
26.31 |
gRNA |
3LWV |
14!D:13!E |
C:G |
WC [cWW][XIX] |
10.69 |
54.07; 51.77 |
2.29 |
-5.37 |
0.42 |
9.09 |
gRNA |
3LWV |
15!D:12!E |
G:C |
Wb [---][-] |
10.99 |
44.39; 62.92 |
18.53 |
7.49 |
0.6 |
2.73 |
gRNA |
3LWV |
17!D:39!D |
G:U |
Wb [cWW][XXVIII] |
10.09 |
48.46; 69.52 |
21.05 |
-13.15 |
0.07 |
15.74 |
gRNA |
3LWV |
18!D:38!D |
C:G |
WC [cWW][XIX] |
10.5 |
51.75; 55.14 |
3.4 |
-16.62 |
0.42 |
28.93 |
gRNA |
3LWV |
19!D:37!D |
G:C |
WC [cWW][XIX] |
10.67 |
54.18; 52.07 |
2.11 |
-9.46 |
0.15 |
17.31 |
gRNA |
3LWV |
20!D:36!D |
C:G |
WC [cWW][XIX] |
10.71 |
52.44; 56.37 |
3.93 |
-8.16 |
0.31 |
15.22 |
gRNA |
3LWV |
21!D:35!D |
G:C |
WC [cWW][XIX] |
10.66 |
50.97; 54.91 |
3.94 |
-11.36 |
0.03 |
17.26 |
gRNA |
3LWV |
22!D:34!D |
G:C |
WC [cWW][XIX] |
10.72 |
57.08; 53.43 |
3.65 |
-4.18 |
0.28 |
19.34 |
gRNA |
3LWV |
23!D:33!D |
U:G |
Wb [cWW][XXVIII] |
10.42 |
71.55; 40.96 |
30.59 |
-5.85 |
0.28 |
7.81 |
gRNA |
3LWV |
24!D:32!D |
G:A |
S [tSH][XI] |
9.0 |
109.58; 12.93 |
96.65 |
-31.96 |
0.03 |
27.6 |
gRNA |
3LWV |
25!D:31!D |
A:G |
S [tSH][XI] |
9.0 |
8.14; 107.9 |
99.77 |
-47.43 |
0.79 |
29.67 |
gRNA |
3LWV |
42!D:8!E |
G:C |
WC [cWW][XIX] |
10.95 |
52.79; 53.12 |
0.33 |
-1.65 |
0.33 |
10.28 |
gRNA |
3LWV |
43!D:7!E |
C:G |
WC [cWW][XIX] |
11.02 |
50.5; 51.53 |
1.03 |
-1.67 |
0.58 |
17.64 |
gRNA |
3LWV |
44!D:6!E |
U:A |
WC [cWW][XX] |
10.86 |
53.54; 56.2 |
2.66 |
-4.17 |
0.1 |
7.74 |
gRNA |
3LWV |
45!D:5!E |
C:G |
WC [cWW][XIX] |
11.56 |
45.71; 48.33 |
2.63 |
-9.79 |
0.04 |
12.03 |