Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3MJ3 BPC Identified: 18 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
IRES_RNA 3MJ3 6174!B:6202!B G:C Wb [---][-] 10.61 45.61; 60.51 14.9 -19.36 0.78 21.74
IRES_RNA 3MJ3 6175!B:6201!B G:C WC [cWW][XIX] 10.76 53.09; 54.85 1.77 -12.5 0.12 16.23
IRES_RNA 3MJ3 6176!B:6200!B U:A WC [cWW][XX] 11.06 51.94; 50.89 1.05 -13.5 0.35 13.1
IRES_RNA 3MJ3 6177!B:6199!B U:G WC [---][-] 10.55 53.45; 57.7 4.25 -6.96 0.2 9.38
IRES_RNA 3MJ3 6178!B:6198!B A:U Wb* [---][-] 10.55 63.08; 45.89 17.19 -1.54 0.08 8.11
IRES_RNA 3MJ3 6179!B:6197!B U:A WC [cWW][XX] 10.25 57.43; 57.19 0.24 -8.86 0.06 12.0
IRES_RNA 3MJ3 6180!B:6196!B U:A WC [cWW][XX] 10.63 49.65; 58.8 9.15 -14.71 0.41 15.85
IRES_RNA 3MJ3 6181!B:6195!B C:G WC [cWW][XIX] 10.99 43.81; 53.84 10.03 -1.27 0.02 6.9
IRES_RNA 3MJ3 6183!B:6194!B G:C WC [cWW][XIX] 10.64 53.17; 54.23 1.06 -16.63 0.03 16.15
IRES_RNA 3MJ3 6184!B:6193!B A:U WC [cWW][XX] 10.55 55.93; 51.08 4.84 -26.4 0.09 31.1
IRES_RNA 3MJ3 6186!B:6189!B U:G S(bp:N3-O2P)_1 [---][-] 8.96 76.57; 30.04 46.54 -148.21 0.6 23.98
IRES_RNA 3MJ3 6186!B:6188!B U:G S(sb:O2*-N7)_1 [---][-] 6.67 70.7; 42.11 28.6 -163.99 2.5 26.86
IRES_RNA 3MJ3 6187!B:6216!C A:U WC [cWW][XX] 10.82 54.09; 53.03 1.06 -11.79 0.14 9.19
IRES_RNA 3MJ3 6188!B:6215!C G:C WC [cWW][XIX] 10.77 52.48; 54.82 2.34 -10.14 0.1 11.69
IRES_RNA 3MJ3 6189!B:6214!C G:C WC [cWW][XIX] 10.5 53.79; 52.62 1.17 -10.97 0.14 17.24
IRES_RNA 3MJ3 6190!B:6213!C U:A WC [cWW][XX] 10.56 57.38; 49.58 7.79 -5.62 0.21 11.14
IRES_RNA 3MJ3 6191!B:6212!C A:U WC [cWW][XX] 10.56 56.07; 53.12 2.95 -1.53 0.02 5.32
IRES_RNA 3MJ3 6192!B:6209!C G:A rS [tSS][-] 8.2 87.68; 49.84 37.84 146.55 1.01 48.55