Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3MUR
BPC Identified: 41
Ambiguities: 0
Riboswitch |
3MUR |
11!R:98!R |
C:G |
WC [cWW][XIX] |
10.69 |
51.62; 59.09 |
7.48 |
-15.89 |
0.03 |
21.57 |
Riboswitch |
3MUR |
12!R:97!R |
A:G |
WC [cWW][VIII] |
13.1 |
49.53; 44.9 |
4.63 |
-4.63 |
0.56 |
20.87 |
Riboswitch |
3MUR |
13!R:94!R |
C:G |
WC [cWW][XIX] |
11.43 |
46.76; 55.03 |
8.27 |
-20.34 |
0.47 |
26.12 |
Riboswitch |
3MUR |
14!R:95!R |
G:A |
fS [tSW][X] |
9.91 |
105.65; 15.58 |
90.07 |
145.73 |
0.55 |
42.43 |
Riboswitch |
3MUR |
14!R:93!R |
G:C |
WC [cWW][XIX] |
11.11 |
52.09; 53.04 |
0.95 |
-10.2 |
0.33 |
15.05 |
Riboswitch |
3MUR |
17!R:93!R |
C:C |
pfS [cSW][-] |
8.5 |
22.53; 129.58 |
107.05 |
-54.41 |
0.84 |
39.95 |
Riboswitch |
3MUR |
21!R:46!R |
G:C |
WC [cWW][XIX] |
10.88 |
50.27; 53.97 |
3.7 |
0.54 |
0.02 |
3.75 |
Riboswitch |
3MUR |
22!R:45!R |
C:G |
WC [cWW][XIX] |
10.57 |
57.19; 53.59 |
3.6 |
-1.02 |
0.05 |
3.95 |
Riboswitch |
3MUR |
23!R:44!R |
A:C |
pS* [cHS][-] |
8.73 |
104.34; 13.41 |
90.93 |
-72.95 |
0.5 |
27.13 |
Riboswitch |
3MUR |
25!R:42!R |
A:G |
S [tSH][XI] |
9.47 |
9.94; 100.54 |
90.6 |
-18.4 |
0.39 |
9.42 |
Riboswitch |
3MUR |
26!R:41!R |
C:G |
WC [cWW][XIX] |
10.7 |
54.84; 57.27 |
2.43 |
-6.36 |
0.15 |
13.4 |
Riboswitch |
3MUR |
27!R:40!R |
C:G |
WC [cWW][XIX] |
10.75 |
54.4; 53.72 |
0.68 |
-4.08 |
0.25 |
8.32 |
Riboswitch |
3MUR |
28!R:39!R |
A:U |
WC [cWW][XX] |
10.24 |
57.74; 56.88 |
0.87 |
-9.1 |
0.02 |
14.77 |
Riboswitch |
3MUR |
29!R:38!R |
U:G |
Wb [cWW][XXVIII] |
10.22 |
69.37; 44.31 |
25.05 |
-6.37 |
0.35 |
4.77 |
Riboswitch |
3MUR |
30!R:37!R |
U:A |
WC [cWW][XX] |
10.57 |
52.52; 51.8 |
0.72 |
-5.81 |
0.71 |
20.35 |
Riboswitch |
3MUR |
31!R:36!R |
C:G |
WC [cWW][XIX] |
10.63 |
51.81; 56.55 |
4.74 |
-3.66 |
0.14 |
6.95 |
Riboswitch |
3MUR |
32!R:35!R |
G:A |
S_mo [tSH][XI] |
9.49 |
96.2; 19.9 |
76.3 |
-112.54 |
0.65 |
21.98 |
Riboswitch |
3MUR |
32!R:34!R |
G:A |
S(sb:O2*-N7) [---][-] |
7.5 |
89.22; 32.4 |
56.82 |
-173.52 |
2.5 |
31.2 |
Riboswitch |
3MUR |
34!R:60!R |
A:U |
rpS(sb:O2*-N3) [cSS][-] |
5.58 |
96.53; 147.56 |
51.04 |
-60.75 |
0.21 |
29.63 |
Riboswitch |
3MUR |
35!R:79!R |
A:G |
rS [tSS][-] |
8.39 |
65.44; 87.23 |
21.8 |
160.1 |
0.27 |
17.99 |
Riboswitch |
3MUR |
35!R:59!R |
A:C |
rpS(bs:O2-O2*) [cSS][-] |
5.96 |
147.61; 103.03 |
44.58 |
-63.66 |
0.89 |
14.87 |
Riboswitch |
3MUR |
44!R:83!R |
C:G |
WC [cWW][XIX] |
10.84 |
56.1; 49.02 |
7.08 |
-11.45 |
0.02 |
12.34 |
Riboswitch |
3MUR |
45!R:49!R |
G:A |
rS [tSS][-] |
8.39 |
89.18; 59.63 |
29.55 |
158.7 |
1.09 |
30.59 |
Riboswitch |
3MUR |
48!R:90!R |
A:U |
rH_1 [tWH][XXIV] |
9.64 |
19.38; 33.58 |
14.2 |
151.19 |
0.71 |
9.54 |
Riboswitch |
3MUR |
50!R:89!R |
G:U |
Wb [cWW][XXVIII] |
10.29 |
36.3; 65.34 |
29.05 |
-9.09 |
0.3 |
10.12 |
Riboswitch |
3MUR |
51!R:88!R |
C:G |
WC [cWW][XIX] |
10.49 |
52.1; 57.24 |
5.14 |
-17.81 |
0.61 |
19.44 |
Riboswitch |
3MUR |
52!R:87!R |
C:G |
WC [cWW][XIX] |
10.83 |
49.66; 55.69 |
6.03 |
-6.51 |
0.09 |
12.21 |
Riboswitch |
3MUR |
53!R:55!R |
U:C |
pS [cSH][-] |
9.19 |
110.01; 27.98 |
82.03 |
-10.85 |
0.09 |
10.49 |
Riboswitch |
3MUR |
54!R:86!R |
C:G |
WC [cWW][XIX] |
10.76 |
56.28; 55.33 |
0.96 |
-3.76 |
0.37 |
17.7 |
Riboswitch |
3MUR |
54!R:82!R |
C:A |
rH* [---][-] |
13.28 |
1.38; 47.06 |
45.68 |
96.93 |
0.04 |
12.07 |
Riboswitch |
3MUR |
55!R:85!R |
C:G |
WC [cWW][XIX] |
10.89 |
54.63; 50.79 |
3.84 |
-2.52 |
0.19 |
7.58 |
Riboswitch |
3MUR |
56!R:84!R |
G:C |
WC [cWW][XIX] |
10.38 |
50.99; 61.36 |
10.37 |
2.17 |
0.33 |
4.86 |
Riboswitch |
3MUR |
57!R:81!R |
G:U |
Wb [cWW][XXVIII] |
11.01 |
40.78; 60.08 |
19.3 |
0.36 |
0.18 |
5.42 |
Riboswitch |
3MUR |
58!R:80!R |
C:G |
WC [cWW][XIX] |
10.59 |
55.34; 54.34 |
1.0 |
-5.37 |
0.57 |
17.8 |
Riboswitch |
3MUR |
59!R:79!R |
C:G |
WC [cWW][XIX] |
10.78 |
53.43; 54.17 |
0.74 |
-5.07 |
0.19 |
10.29 |
Riboswitch |
3MUR |
60!R:78!R |
U:A |
WC [cWW][XX] |
10.43 |
52.95; 60.16 |
7.22 |
-4.1 |
0.05 |
5.37 |
Riboswitch |
3MUR |
61!R:77!R |
A:U |
Wb* [---][-] |
10.78 |
60.34; 43.53 |
16.81 |
15.38 |
0.17 |
16.53 |
Riboswitch |
3MUR |
63!R:77!R |
A:U |
sWC [---][-] |
10.46 |
32.73; 97.65 |
64.92 |
16.98 |
1.47 |
14.44 |
Riboswitch |
3MUR |
64!R:76!R |
C:G |
WC [cWW][XIX] |
11.04 |
53.6; 52.42 |
1.18 |
8.21 |
1.4 |
29.64 |
Riboswitch |
3MUR |
65!R:75!R |
C:G |
WC [cWW][XIX] |
10.21 |
66.56; 55.83 |
10.73 |
-5.4 |
0.89 |
24.27 |
Riboswitch |
3MUR |
82!R:83!R |
A:G |
rS(ps:O1P-O2*) [---][-] |
8.06 |
152.72; 113.18 |
39.53 |
-73.77 |
0.46 |
38.88 |