Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3NCU
BPC Identified: 12
Ambiguities: 0
| dsRNA |
3NCU |
1!C:12!D |
G:C |
WC [cWW][XIX] |
11.03 |
50.39; 49.8 |
0.59 |
-1.2 |
0.39 |
13.03 |
| dsRNA |
3NCU |
2!C:11!D |
A:U |
WC [cWW][XX] |
10.39 |
56.01; 58.26 |
2.25 |
-18.79 |
0.31 |
20.1 |
| dsRNA |
3NCU |
3!C:10!D |
C:G |
WC [cWW][XIX] |
10.75 |
58.41; 52.17 |
6.25 |
-12.94 |
0.14 |
17.47 |
| dsRNA |
3NCU |
4!C:9!D |
G:C |
WC [cWW][XIX] |
10.66 |
57.29; 55.15 |
2.14 |
-7.76 |
0.22 |
9.76 |
| dsRNA |
3NCU |
5!C:8!D |
C:G |
WC [cWW][XIX] |
10.47 |
62.29; 53.38 |
8.91 |
-3.58 |
0.44 |
4.23 |
| dsRNA |
3NCU |
6!C:7!D |
U:A |
WC [cWW][XX] |
10.48 |
52.95; 56.61 |
3.66 |
-4.02 |
0.27 |
16.82 |
| dsRNA |
3NCU |
7!C:6!D |
A:U |
WC [cWW][XX] |
10.68 |
55.84; 46.02 |
9.82 |
-7.84 |
0.1 |
11.92 |
| dsRNA |
3NCU |
8!C:5!D |
G:C |
WC [cWW][XIX] |
10.61 |
58.48; 55.49 |
2.99 |
-0.77 |
0.22 |
8.68 |
| dsRNA |
3NCU |
9!C:4!D |
C:G |
WC [cWW][XIX] |
10.39 |
56.34; 61.13 |
4.79 |
-7.01 |
0.5 |
15.34 |
| dsRNA |
3NCU |
10!C:3!D |
G:C |
WC [cWW][XIX] |
10.58 |
58.23; 51.66 |
6.57 |
-13.68 |
0.22 |
20.34 |
| dsRNA |
3NCU |
11!C:2!D |
U:A |
WC [cWW][XX] |
10.48 |
56.04; 55.38 |
0.66 |
-13.38 |
0.05 |
15.32 |
| dsRNA |
3NCU |
12!C:1!D |
C:G |
WC [cWW][XIX] |
11.27 |
49.41; 54.55 |
5.14 |
-3.49 |
0.2 |
6.59 |