Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3NKB BPC Identified: 38 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
HDV_ribozyme 3NKB 2!A:37!B G:U Wb [cWW][XXVIII] 10.42 41.01; 76.78 35.77 5.23 0.08 17.26
HDV_ribozyme 3NKB 3!A:36!B G:C WC [cWW][XIX] 10.34 56.37; 57.93 1.56 0.88 0.06 15.77
HDV_ribozyme 3NKB 4!A:35!B C:G WC [cWW][XIX] 10.34 59.41; 53.7 5.71 0.76 0.36 4.47
HDV_ribozyme 3NKB 5!A:34!B U:A WC [cWW][XX] 10.46 55.53; 58.48 2.95 -0.55 0.26 6.34
HDV_ribozyme 3NKB 6!A:33!B U:A WC [cWW][XX] 10.36 56.96; 57.92 0.96 -2.33 0.15 4.83
HDV_ribozyme 3NKB 7!A:32!B G:C WC [cWW][XIX] 10.55 53.23; 57.42 4.19 -6.41 0.28 11.1
HDV_ribozyme 3NKB 8!A:31!B C:G WC [cWW][XIX] 10.56 54.8; 54.42 0.38 -8.92 0.37 16.41
HDV_ribozyme 3NKB 10!B:73!B G:C WC [cWW][XIX] 10.75 51.67; 54.88 3.22 -9.66 0.1 12.82
HDV_ribozyme 3NKB 11!B:72!B G:C WC [cWW][XIX] 10.42 51.5; 60.45 8.95 -15.68 0.33 20.59
HDV_ribozyme 3NKB 12!B:71!B U:A WC [cWW][XX] 10.68 54.8; 55.93 1.13 -15.6 0.08 21.96
HDV_ribozyme 3NKB 13!B:70!B C:G WC [cWW][XIX] 10.82 53.39; 51.48 1.92 -10.68 0.09 17.7
HDV_ribozyme 3NKB 14!B:69!B C:G WC [cWW][XIX] 10.72 55.36; 53.8 1.56 -10.55 0.3 10.88
HDV_ribozyme 3NKB 15!B:68!B G:C WC [cWW][XIX] 10.65 54.58; 54.78 0.2 -10.59 0.16 11.93
HDV_ribozyme 3NKB 16!B:67!B C:G WC [cWW][XIX] 10.71 54.04; 53.17 0.88 -10.36 0.08 11.66
HDV_ribozyme 3NKB 17!B:66!B A:U WC [cWW][XX] 10.39 57.11; 57.38 0.27 -2.06 0.15 4.75
HDV_ribozyme 3NKB 18!B:30!B G:C WC [cWW][XIX] 10.48 55.72; 55.28 0.44 -15.51 0.17 24.03
HDV_ribozyme 3NKB 19!B:65!B C:A rpS(bs:O2-O2*) [cSS][-] 5.58 107.88; 153.71 45.82 -44.18 1.75 9.53
HDV_ribozyme 3NKB 19!B:29!B C:G WC [cWW][XIX] 10.48 59.5; 54.01 5.48 -19.28 0.03 23.96
HDV_ribozyme 3NKB 20!B:64!B C:A rpS(sb:O2*-N3) [cSS][-] 5.54 155.19; 93.28 61.91 -50.79 0.01 28.86
HDV_ribozyme 3NKB 20!B:28!B C:G WC [cWW][XIX] 10.85 53.38; 49.63 3.76 -12.5 0.06 12.6
HDV_ribozyme 3NKB 21!B:62!B U:C pS [cSH][-] 6.95 138.22; 39.01 99.21 68.14 1.72 53.27
HDV_ribozyme 3NKB 21!B:26!B U:G rWb* [tWW][XXVII] 11.99 34.79; 15.12 19.67 -133.65 0.42 15.72
HDV_ribozyme 3NKB 22!B:42!B C:A pfS [cSW][-] 9.28 125.01; 33.39 91.61 -10.52 0.11 25.21
HDV_ribozyme 3NKB 22!B:39!B C:G WC [cWW][XIX] 10.49 56.1; 56.02 0.08 -15.87 0.83 33.23
HDV_ribozyme 3NKB 23!B:38!B C:G WC [cWW][XIX] 10.7 54.13; 53.54 0.58 -1.84 0.25 12.79
HDV_ribozyme 3NKB 29!B:65!B G:A rS [tSS][-] 8.09 85.73; 59.4 26.33 161.2 0.82 33.02
HDV_ribozyme 3NKB 40!B:42!B G:A pS_1 [cSH][-] 7.71 142.86; 26.52 116.34 -23.3 0.57 47.71
HDV_ribozyme 3NKB 41!B:60!B C:G rH_1 [tWH][-] 11.22 23.36; 5.98 17.39 168.46 0.15 3.32
HDV_ribozyme 3NKB 43!B:61!B A:G WC [cWW][VIII] 12.78 45.23; 44.77 0.46 -3.51 0.83 20.13
HDV_ribozyme 3NKB 44!B:60!B C:G WC [cWW][XIX] 10.64 55.25; 51.93 3.32 -16.5 0.35 24.71
HDV_ribozyme 3NKB 45!B:59!B A:U WC [cWW][XX] 10.42 55.89; 57.05 1.16 -12.34 0.07 17.64
HDV_ribozyme 3NKB 46!B:58!B U:A WC [cWW][XX] 10.35 58.13; 57.72 0.41 -7.76 0.03 11.99
HDV_ribozyme 3NKB 47!B:57!B U:A WC [cWW][XX] 10.33 57.34; 56.45 0.88 0.31 0.25 10.94
HDV_ribozyme 3NKB 48!B:55!B C:G WC [cWW][XIX] 10.58 54.09; 53.61 0.48 -13.87 1.11 28.31
HDV_ribozyme 3NKB 49!B:54!B C:G WC [cWW][XIX] 10.51 57.29; 54.46 2.82 -6.75 0.54 22.77
HDV_ribozyme 3NKB 50!B:53!B G:A S_mo [tSH][XI] 9.62 92.66; 20.21 72.46 -133.13 0.45 16.03
HDV_ribozyme 3NKB 50!B:52!B G:A S(sb:O2*-N7) [---][-] 7.49 85.58; 32.34 53.25 -176.36 2.7 23.5
HDV_ribozyme 3NKB 56!B:57!B U:A pS [cSH][-] 6.58 140.51; 35.09 105.41 26.06 0.12 16.93