Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3NPB BPC Identified: 55 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3NPB 0!A:118!A G:C Wb* [---][-] 10.71 66.29; 53.53 12.76 6.87 0.05 10.58
Riboswitch 3NPB 1!A:117!A U:A WC [cWW][XX] 11.22 48.4; 48.84 0.44 -14.52 0.99 36.53
Riboswitch 3NPB 2!A:116!A U:A WC [cWW][XX] 10.7 50.84; 58.71 7.87 -14.57 0.39 16.6
Riboswitch 3NPB 3!A:115!A C:G WC [cWW][XIX] 10.95 54.82; 52.76 2.06 -15.01 0.55 16.12
Riboswitch 3NPB 4!A:114!A U:A WC [cWW][XX] 10.6 56.11; 54.44 1.67 -18.27 0.23 28.39
Riboswitch 3NPB 5!A:113!A U:A WC [cWW][XX] 10.33 55.27; 61.05 5.78 -17.18 0.19 18.12
Riboswitch 3NPB 6!A:112!A A:U WC [cWW][XX] 10.79 53.82; 53.32 0.49 -11.12 0.12 12.81
Riboswitch 3NPB 7!A:111!A U:A WC [cWW][XX] 10.49 51.62; 55.39 3.77 -12.8 0.0 12.22
Riboswitch 3NPB 8!A:110!A C:G WC [cWW][XIX] 10.74 52.47; 52.43 0.03 -6.69 0.4 3.81
Riboswitch 3NPB 11!A:45!A G:C rpS [cSS][-] 5.76 96.56; 155.41 58.85 -85.71 0.88 18.44
Riboswitch 3NPB 12!A:80!A A:C fS(sb:O2*-N1)_1 [tSS][-] 8.49 52.9; 90.85 37.94 160.82 1.83 31.99
Riboswitch 3NPB 12!A:44!A A:G rpS [cSS][-] 5.66 141.9; 111.97 29.93 -21.37 0.09 16.1
Riboswitch 3NPB 13!A:42!A G:C WC [cWW][XIX] 10.62 60.23; 60.26 0.03 -11.13 0.25 17.42
Riboswitch 3NPB 14!A:41!A A:U WC [cWW][XX] 11.13 47.29; 54.88 7.59 -19.58 0.11 19.48
Riboswitch 3NPB 15!A:40!A A:U Wb [---][-] 11.27 42.44; 56.33 13.89 -4.51 0.3 8.82
Riboswitch 3NPB 16!A:39!A G:C WC [cWW][XIX] 10.51 49.15; 59.51 10.35 -7.76 0.03 13.83
Riboswitch 3NPB 17!A:38!A C:G Wb* [---][-] 10.87 47.75; 63.66 15.92 -10.18 0.31 17.57
Riboswitch 3NPB 20!A:32!A A:G rS [tSS][-] 8.63 47.27; 101.01 53.74 135.63 0.1 43.18
Riboswitch 3NPB 21!A:36!A G:A rS(bs:N2-O2*) [---][-] 4.96 94.2; 80.61 13.59 -138.89 2.67 74.14
Riboswitch 3NPB 21!A:31!A G:C WC [cWW][XIX] 10.54 52.86; 56.08 3.21 6.54 0.24 6.87
Riboswitch 3NPB 22!A:30!A G:C WC [cWW][XIX] 11.09 55.42; 49.86 5.56 -3.25 0.05 4.19
Riboswitch 3NPB 23!A:83!A G:A fS [tSW][X] 9.68 121.55; 13.27 108.27 107.77 0.59 13.93
Riboswitch 3NPB 23!A:29!A G:C WC [cWW][XIX] 10.76 61.75; 55.49 6.26 -4.7 0.14 9.35
Riboswitch 3NPB 24!A:109!A A:A pfS [cSW][-] 9.65 35.56; 113.83 78.28 -46.7 2.36 44.44
Riboswitch 3NPB 25!A:89!A* C:G WC [cWW][XIX]; Wb* [---][-] 11.39 45.96; 59.14 13.18 -29.65 0.08 34.07
Riboswitch 3NPB 26!A:88!A U:A WC [cWW][XX] 10.31 53.26; 54.65 1.39 -18.98 0.71 17.81
Riboswitch 3NPB 27!A:87!A G:C WC [cWW][XIX] 10.22 49.39; 57.15 7.75 -6.48 0.22 10.66
Riboswitch 3NPB 28!A:86!A G:C WC [cWW][XIX] 11.22 52.45; 50.41 2.04 -15.49 0.25 32.55
Riboswitch 3NPB 30!A:82!A C:A pfS [cSW][-] 9.47 120.79; 31.88 88.92 -27.92 0.01 20.06
Riboswitch 3NPB 43!A:81!A A:U WC [cWW][XX] 11.07 55.41; 57.01 1.6 -8.73 0.49 14.1
Riboswitch 3NPB 44!A:80!A G:C WC [cWW][XIX] 10.27 56.47; 57.65 1.19 -12.5 0.39 20.25
Riboswitch 3NPB 45!A:79!A C:G WC [cWW][XIX] 10.36 58.96; 49.65 9.31 -17.2 0.4 20.43
Riboswitch 3NPB 48!A:78!A C:U WC [cWW][XVIII] 8.65 53.62; 63.97 10.35 -21.25 2.49 6.53
Riboswitch 3NPB 48!A:77!A C:G WC [cWW][XIX] 11.0 52.17; 51.67 0.5 5.13 0.43 16.24
Riboswitch 3NPB 49!A:76!A C:G WC [cWW][XIX] 10.5 55.89; 56.49 0.6 -0.4 0.6 9.53
Riboswitch 3NPB 50!A:73!A G:C WC [cWW][XIX] 10.78 55.65; 47.74 7.91 -11.08 0.52 18.25
Riboswitch 3NPB 51!A:72!A G:C Wb* [---][-] 10.81 64.4; 49.85 14.55 -6.07 0.08 9.02
Riboswitch 3NPB 52!A:71!A U:A Wb* [---][-] 11.01 45.19; 62.57 17.38 -20.85 0.18 19.85
Riboswitch 3NPB 56!A:69!A A:U WC [cWW][XX] 10.56 58.17; 50.3 7.87 -7.01 0.08 10.86
Riboswitch 3NPB 57!A:68!A U:A WC [cWW][XX] 10.26 57.93; 60.75 2.82 -0.78 0.67 15.47
Riboswitch 3NPB 58!A:67!A G:C WC [cWW][XIX] 10.18 56.35; 63.28 6.92 -6.54 0.05 15.59
Riboswitch 3NPB 59!A:66!A G:C WC [cWW][XIX] 10.8 56.71; 45.75 10.96 -0.93 0.38 28.43
Riboswitch 3NPB 60!A:65!A C:G WC_Mo [cWW][XIX] 11.01 60.73; 64.43 3.7 -4.98 0.62 17.21
Riboswitch 3NPB 61!A:64!A G:A S_mo [tSH][XI] 9.28 97.14; 18.02 79.12 -108.26 0.78 22.1
Riboswitch 3NPB 61!A:63!A G:A S(sb:O2*-N7) [---][-] 7.31 91.78; 36.39 55.39 -155.11 0.24 49.79
Riboswitch 3NPB 79!A:112!A G:U rS(ss:O2*-O2*)_2 [---][-] 5.8 174.08; 161.72 12.37 -109.36 1.01 64.88
Riboswitch 3NPB 85!A:109!A U:A WC [cWW][XX] 10.56 49.55; 57.87 8.32 -12.95 0.22 11.08
Riboswitch 3NPB 90!A:106!A C:G WC [cWW][XIX] 10.36 54.1; 54.85 0.75 -14.55 0.03 23.39
Riboswitch 3NPB 91!A:105!A A:U Wb* [---][-] 10.39 66.47; 48.75 17.72 -0.54 0.17 10.43
Riboswitch 3NPB 92!A:104!A A:U WC [cWW][XX] 11.22 53.1; 55.84 2.74 -7.15 0.85 8.88
Riboswitch 3NPB 93!A:103!A G:C WC [cWW][XIX] 10.85 60.7; 45.73 14.98 -11.85 0.13 21.47
Riboswitch 3NPB 94!A:102!A C:G WC [cWW][XIX] 10.73 43.72; 56.86 13.14 -14.44 0.23 23.14
Riboswitch 3NPB 96!A:98!A C:A S(sb:O2*-N7) [---][-] 6.41 71.85; 32.7 39.15 -161.38 2.32 36.17
Riboswitch 3NPB 100!A:101!A C:A rS(sp:O2*-O1P)_1 [---][-] 8.35 74.26; 133.99 59.73 -158.68 1.79 81.21
Riboswitch 3NPB 101!A:103!A A:C S*(ps:O2P-O2*) [---][-] 9.91 136.79; 67.78 69.01 -93.69 1.05 68.81