Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3NPN BPC Identified: 21 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3NPN 4!A:35!A C:G WC [cWW][XIX] 10.69 56.73; 55.53 1.21 -0.53 0.05 3.14
Riboswitch 3NPN 5!A:34!A G:A WC [cWW][VIII] 11.69 52.61; 63.66 11.06 -18.41 0.07 26.61
Riboswitch 3NPN 6!A:33!A A:U WC [cWW][XX] 10.6 57.57; 49.57 8.0 -10.55 0.22 17.95
Riboswitch 3NPN 7!A:45!A G:A fS [tSW][X] 9.45 117.69; 4.82 112.87 133.94 0.16 10.12
Riboswitch 3NPN 7!A:32!A G:C WC [cWW][XIX] 10.89 53.05; 50.3 2.75 -5.28 0.19 10.34
Riboswitch 3NPN 8!A:53!A G:C WC [cWW][XIX] 10.39 52.9; 64.76 11.86 -5.22 0.42 10.35
Riboswitch 3NPN 9!A:52!A A:U WC [cWW][XX] 10.44 56.12; 58.22 2.1 -5.44 0.18 10.54
Riboswitch 3NPN 10!A:51!A G:C Wb [---][-] 10.99 42.53; 57.62 15.09 0.37 0.26 3.77
Riboswitch 3NPN 11!A:50!A C:G WC [cWW][XIX] 10.93 59.66; 56.45 3.21 -1.63 0.02 12.91
Riboswitch 3NPN 12!A:49!A G:C WC [cWW][XIX] 10.78 52.72; 52.41 0.31 -3.54 0.22 8.68
Riboswitch 3NPN 13!A:48!A U:G WC [---][-] 10.9 53.19; 54.21 1.02 -2.08 0.23 6.09
Riboswitch 3NPN 14!A:29!A U:A rH_1 [tWH][XXIV] 9.58 30.14; 22.29 7.85 -158.3 0.08 10.11
Riboswitch 3NPN 16!A:31!A C:G WC [cWW][XIX] 10.66 54.17; 50.5 3.66 -11.83 0.15 13.13
Riboswitch 3NPN 16!A:28!A C:C S [---][-] 9.84 10.72; 80.06 69.33 108.15 1.32 6.67
Riboswitch 3NPN 17!A:28!A A:C S [tSH][-] 9.39 4.59; 106.89 102.3 -27.72 0.54 8.97
Riboswitch 3NPN 18!A:27!A A:C sWb [---][-] 10.88 29.47; 84.08 54.61 2.24 0.45 10.25
Riboswitch 3NPN 19!A:26!A G:C WC [cWW][XIX] 10.57 53.9; 56.94 3.04 -4.98 0.33 10.48
Riboswitch 3NPN 20!A:25!A C:G WC [cWW][XIX] 10.83 53.61; 53.51 0.1 -3.59 0.08 5.44
Riboswitch 3NPN 21!A:24!A G:A S [tSH][XI] 10.5 78.34; 22.47 55.86 -176.39 0.66 19.23
Riboswitch 3NPN 30!A:46!A G:C WC [cWW][XIX] 10.57 56.04; 52.82 3.22 -2.48 0.14 20.84
Riboswitch 3NPN 33!A:44!A U:A pfS [cSW][-] 9.46 119.1; 36.74 82.36 -9.2 0.11 9.86