Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3NPQ BPC Identified: 67 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3NPQ 2!A:24!B G:A rS [tSS][-] 8.38 91.73; 59.25 32.48 159.04 0.18 22.66
Riboswitch 3NPQ 4!A:35!A C:G WC [cWW][XIX] 10.48 59.79; 53.02 6.77 -3.86 0.0 6.83
Riboswitch 3NPQ 5!A:34!A G:C WC [cWW][XIX] 10.67 55.14; 56.37 1.23 -16.12 0.29 23.63
Riboswitch 3NPQ 6!A:43!A A:A pS [cSH][-] 7.66 140.67; 24.0 116.67 -19.87 0.6 53.54
Riboswitch 3NPQ 6!A:33!A A:U WC [cWW][XX] 10.6 57.31; 54.44 2.87 -10.0 0.47 18.12
Riboswitch 3NPQ 7!A:45!A G:A fS [tSW][X] 9.61 116.01; 6.15 109.86 141.95 0.02 10.05
Riboswitch 3NPQ 7!A:32!A G:C WC [cWW][XIX] 10.87 52.41; 53.8 1.39 -4.57 0.14 6.87
Riboswitch 3NPQ 8!A:53!A G:C WC [cWW][XIX] 10.67 60.3; 59.1 1.19 -7.62 0.31 17.0
Riboswitch 3NPQ 11!A:50!A C:G WC_Mo [cWW][XIX] 11.38 58.84; 58.82 0.02 -3.25 0.21 6.31
Riboswitch 3NPQ 12!A:49!A G:C WC [cWW][XIX] 10.81 56.74; 54.15 2.59 -5.35 0.31 10.13
Riboswitch 3NPQ 13!A:48!A C:G WC [cWW][XIX] 10.6 58.9; 51.25 7.65 -4.57 0.15 7.6
Riboswitch 3NPQ 14!A:29!A U:A rH_1 [tWH][XXIV] 9.72 33.67; 21.83 11.84 -174.69 0.05 6.95
Riboswitch 3NPQ 16!A:31!A C:G WC [cWW][XIX] 10.56 56.52; 54.94 1.58 -12.07 0.02 17.47
Riboswitch 3NPQ 16!A:28!A C:C S [---][-] 9.47 9.52; 83.36 73.84 98.02 0.95 13.61
Riboswitch 3NPQ 17!A:28!A A:C S [tSH][-] 9.3 7.55; 111.74 104.19 -9.78 0.24 3.4
Riboswitch 3NPQ 18!A:27!A A:C sWb [---][-] 10.79 30.92; 86.09 55.17 5.42 0.65 11.82
Riboswitch 3NPQ 19!A:26!A G:C WC [cWW][XIX] 10.74 53.77; 53.17 0.6 -4.49 0.33 11.97
Riboswitch 3NPQ 20!A:25!A C:G WC [cWW][XIX] 10.67 57.06; 52.21 4.85 0.13 0.12 3.01
Riboswitch 3NPQ 21!A:24!A G:A S_mo [tSH][XI] 10.13 81.98; 21.99 60.0 -148.66 0.34 14.98
Riboswitch 3NPQ 21!A:23!A G:G S(sb:O2*-N7)_1 [---][-] 7.4 79.88; 32.07 47.82 -170.33 2.45 29.47
Riboswitch 3NPQ 24!A:2!C A:G rS [tSS][-] 8.47 57.67; 91.15 33.49 159.63 0.0 22.64
Riboswitch 3NPQ 30!A:46!A G:C WC [cWW][XIX] 10.57 58.75; 56.63 2.12 3.84 0.35 14.53
Riboswitch 3NPQ 33!A:44!A U:A pfS [cSW][-] 9.38 122.65; 37.24 85.41 -17.16 0.19 17.06
Riboswitch 3NPQ 34!A:43!A C:A pfS [cSW][-] 8.97 130.59; 32.41 98.19 -10.12 0.77 42.77
Riboswitch 3NPQ 2!B:24!C G:A rS [tSS][-] 8.33 92.25; 59.13 33.12 158.52 0.23 23.15
Riboswitch 3NPQ 4!B:35!B C:G WC [cWW][XIX] 10.48 59.77; 52.99 6.77 -3.85 0.01 6.83
Riboswitch 3NPQ 5!B:34!B G:C WC [cWW][XIX] 10.67 55.19; 56.38 1.19 -16.05 0.29 23.61
Riboswitch 3NPQ 6!B:33!B A:U WC [cWW][XX] 10.6 57.31; 54.38 2.92 -9.92 0.47 18.08
Riboswitch 3NPQ 7!B:45!B G:A fS [tSW][X] 9.61 116.03; 6.18 109.85 141.69 0.03 10.02
Riboswitch 3NPQ 7!B:32!B G:C WC [cWW][XIX] 10.87 52.43; 53.82 1.39 -4.59 0.15 6.84
Riboswitch 3NPQ 8!B:53!B G:C WC [cWW][XIX] 10.67 60.3; 59.1 1.2 -7.61 0.31 16.98
Riboswitch 3NPQ 11!B:50!B C:G WC_Mo [cWW][XIX] 11.38 58.81; 58.82 0.02 -3.27 0.21 6.29
Riboswitch 3NPQ 12!B:49!B G:C WC [cWW][XIX] 10.81 56.71; 54.18 2.53 -5.31 0.31 10.16
Riboswitch 3NPQ 13!B:48!B C:G WC [cWW][XIX] 10.6 58.94; 51.26 7.68 -4.63 0.15 7.58
Riboswitch 3NPQ 14!B:29!B U:A rH_1 [tWH][XXIV] 9.72 33.65; 21.85 11.81 -174.62 0.05 6.99
Riboswitch 3NPQ 16!B:31!B C:G WC [cWW][XIX] 10.56 56.49; 54.85 1.64 -12.59 0.06 17.94
Riboswitch 3NPQ 16!B:28!B C:C S [---][-] 9.47 9.54; 83.34 73.8 98.15 0.96 13.6
Riboswitch 3NPQ 17!B:28!B A:C S [tSH][-] 9.3 7.55; 111.74 104.19 -9.77 0.24 3.41
Riboswitch 3NPQ 18!B:27!B A:C sWb [---][-] 10.79 30.9; 86.08 55.18 5.42 0.64 11.79
Riboswitch 3NPQ 19!B:26!B G:C WC [cWW][XIX] 10.74 53.76; 53.19 0.57 -4.44 0.33 11.98
Riboswitch 3NPQ 20!B:25!B C:G WC [cWW][XIX] 10.67 57.05; 52.2 4.85 0.04 0.12 3.02
Riboswitch 3NPQ 21!B:24!B G:A S_mo [tSH][XI] 10.13 81.97; 22.0 59.97 -148.56 0.34 14.98
Riboswitch 3NPQ 21!B:23!B G:G S(sb:O2*-N7)_1 [---][-] 7.4 79.88; 32.08 47.81 -170.35 2.45 29.44
Riboswitch 3NPQ 30!B:46!B G:C WC [cWW][XIX] 10.56 58.8; 56.67 2.13 3.94 0.35 14.52
Riboswitch 3NPQ 33!B:44!B U:A pfS [cSW][-] 9.38 122.59; 37.22 85.37 -17.09 0.2 17.07
Riboswitch 3NPQ 4!C:35!C C:G WC [cWW][XIX] 10.48 59.8; 53.01 6.78 -3.92 0.0 6.8
Riboswitch 3NPQ 5!C:34!C G:C WC [cWW][XIX] 10.67 55.19; 56.38 1.19 -16.0 0.29 23.59
Riboswitch 3NPQ 6!C:43!C A:A pS [cSH][-] 7.66 140.68; 24.07 116.61 -20.04 0.61 53.56
Riboswitch 3NPQ 6!C:33!C A:U WC [cWW][XX] 10.6 57.29; 54.45 2.84 -9.91 0.47 18.08
Riboswitch 3NPQ 7!C:45!C G:A fS [tSW][X] 9.61 116.0; 6.18 109.82 141.91 0.03 10.03
Riboswitch 3NPQ 7!C:32!C G:C WC [cWW][XIX] 10.87 52.4; 53.79 1.39 -4.6 0.15 6.92
Riboswitch 3NPQ 8!C:53!C G:C WC [cWW][XIX] 10.67 60.29; 59.1 1.19 -7.65 0.31 16.99
Riboswitch 3NPQ 11!C:50!C C:G WC_Mo [cWW][XIX] 11.39 58.85; 58.76 0.09 -3.29 0.22 6.29
Riboswitch 3NPQ 12!C:49!C G:C WC [cWW][XIX] 10.81 56.72; 54.15 2.57 -5.34 0.31 10.13
Riboswitch 3NPQ 13!C:48!C C:G WC [cWW][XIX] 10.6 58.93; 51.22 7.71 -4.58 0.15 7.62
Riboswitch 3NPQ 14!C:29!C U:A rH_1 [tWH][XXIV] 9.72 33.65; 21.83 11.82 -174.73 0.05 6.98
Riboswitch 3NPQ 16!C:31!C C:G WC [cWW][XIX] 10.56 56.49; 54.92 1.58 -12.66 0.07 17.97
Riboswitch 3NPQ 16!C:28!C C:C S [---][-] 9.47 9.51; 83.31 73.8 98.19 0.95 13.6
Riboswitch 3NPQ 17!C:28!C A:C S [tSH][-] 9.3 7.57; 111.71 104.14 -9.83 0.25 3.34
Riboswitch 3NPQ 18!C:27!C A:C sWb [---][-] 10.79 30.9; 86.11 55.21 5.39 0.64 11.75
Riboswitch 3NPQ 19!C:26!C G:C WC [cWW][XIX] 10.74 53.77; 53.22 0.55 -4.5 0.33 11.95
Riboswitch 3NPQ 20!C:25!C C:G WC [cWW][XIX] 10.67 57.04; 52.17 4.87 0.12 0.12 3.05
Riboswitch 3NPQ 21!C:24!C G:A S_mo [tSH][XI] 10.13 81.96; 22.04 59.92 -148.87 0.34 15.02
Riboswitch 3NPQ 21!C:23!C G:G S(sb:O2*-N7)_1 [---][-] 7.4 79.89; 32.07 47.81 -170.31 2.45 29.4
Riboswitch 3NPQ 30!C:46!C G:C WC [cWW][XIX] 10.57 58.73; 56.67 2.06 3.96 0.35 14.6
Riboswitch 3NPQ 33!C:44!C U:A pfS [cSW][-] 9.37 122.66; 37.26 85.39 -17.17 0.19 17.08
Riboswitch 3NPQ 34!C:43!C C:A pfS [cSW][-] 8.97 130.59; 32.31 98.28 -9.94 0.77 42.73