Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3O6E
BPC Identified: 12
Ambiguities: 0
| piRNA |
3O6E |
1!A:12!a |
G:C |
WC [cWW][XIX] |
10.56 |
53.61; 54.41 |
0.8 |
-0.14 |
0.8 |
17.13 |
| piRNA |
3O6E |
2!A:11!a |
C:G |
WC [cWW][XIX] |
10.86 |
51.5; 49.43 |
2.07 |
-3.18 |
0.09 |
8.04 |
| piRNA |
3O6E |
3!A:10!a |
G:C |
WC [cWW][XIX] |
10.75 |
53.08; 50.72 |
2.36 |
-4.8 |
0.0 |
9.42 |
| piRNA |
3O6E |
4!A:9!a |
A:U |
WC [cWW][XX] |
10.52 |
58.39; 57.49 |
0.91 |
-3.12 |
0.13 |
6.49 |
| piRNA |
3O6E |
5!A:8!a |
A:U |
WC [cWW][XX] |
10.41 |
55.7; 54.83 |
0.87 |
-10.45 |
0.02 |
20.06 |
| piRNA |
3O6E |
6!A:7!a |
U:A |
WC [cWW][XX] |
10.68 |
54.62; 57.14 |
2.52 |
-6.84 |
0.02 |
12.57 |
| piRNA |
3O6E |
7!A:6!a |
A:U |
WC [cWW][XX] |
10.68 |
57.14; 54.62 |
2.52 |
-6.84 |
0.02 |
12.57 |
| piRNA |
3O6E |
8!A:5!a |
U:A |
WC [cWW][XX] |
10.41 |
54.83; 55.7 |
0.87 |
-10.45 |
0.02 |
20.06 |
| piRNA |
3O6E |
9!A:4!a |
U:A |
WC [cWW][XX] |
10.52 |
57.49; 58.39 |
0.91 |
-3.12 |
0.13 |
6.49 |
| piRNA |
3O6E |
10!A:3!a |
C:G |
WC [cWW][XIX] |
10.75 |
50.72; 53.08 |
2.36 |
-4.8 |
0.0 |
9.42 |
| piRNA |
3O6E |
11!A:2!a |
G:C |
WC [cWW][XIX] |
10.86 |
49.43; 51.5 |
2.07 |
-3.18 |
0.09 |
8.04 |
| piRNA |
3O6E |
12!A:1!a |
C:G |
WC [cWW][XIX] |
10.56 |
54.41; 53.61 |
0.8 |
-0.14 |
0.8 |
17.13 |