Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3OUY
BPC Identified: 26
Ambiguities: 0
| tRNA |
3OUY |
1!C:31!C |
G:C |
WC [cWW][XIX] |
10.91 |
51.2; 50.48 |
0.72 |
-10.8 |
0.54 |
4.51 |
| tRNA |
3OUY |
2!C:30!C |
G:C |
WC [cWW][XIX] |
10.54 |
55.12; 58.17 |
3.05 |
-13.06 |
0.01 |
19.43 |
| tRNA |
3OUY |
3!C:29!C |
A:U |
WC [cWW][XX] |
10.36 |
53.23; 55.58 |
2.36 |
-7.02 |
0.3 |
7.46 |
| tRNA |
3OUY |
4!C:28!C |
A:U |
WC [cWW][XX] |
10.19 |
52.84; 65.43 |
12.6 |
-13.58 |
0.15 |
19.49 |
| tRNA |
3OUY |
5!C:27!C |
G:C |
WC [cWW][XIX] |
10.7 |
58.16; 58.3 |
0.14 |
-10.85 |
0.39 |
28.18 |
| tRNA |
3OUY |
6!C:26!C |
U:A |
WC [cWW][XX] |
9.95 |
63.72; 59.18 |
4.55 |
-15.83 |
0.37 |
18.13 |
| tRNA |
3OUY |
7!C:25!C |
A:U |
WC [cWW][XX] |
10.43 |
62.81; 57.68 |
5.13 |
-17.66 |
0.18 |
24.03 |
| tRNA |
3OUY |
8!C:24!C |
G:U |
Wb [cWW][XXVIII] |
10.43 |
44.24; 65.91 |
21.67 |
-9.94 |
0.08 |
14.87 |
| tRNA |
3OUY |
9!C:23!C |
A:U |
WC [cWW][XX] |
10.29 |
61.5; 62.27 |
0.77 |
-6.64 |
0.25 |
17.04 |
| tRNA |
3OUY |
10!C:22!C |
U:A |
WC [cWW][XX] |
10.56 |
58.07; 53.81 |
4.26 |
-7.57 |
0.06 |
10.64 |
| tRNA |
3OUY |
11!C:21!C |
G:C |
WC [cWW][XIX] |
10.61 |
57.7; 54.08 |
3.62 |
-11.82 |
0.08 |
15.11 |
| tRNA |
3OUY |
12!C:20!C |
G:C |
WC [cWW][XIX] |
10.4 |
57.41; 58.06 |
0.65 |
-13.27 |
0.58 |
34.92 |
| tRNA |
3OUY |
13!C:17!C |
U:A |
rH_1 [tWH][XXIV] |
9.42 |
40.47; 29.77 |
10.7 |
148.53 |
0.76 |
34.07 |
| tRNA |
3OUY |
14!C:16!C |
U:A |
S(sb:O2*-N7) [---][-] |
6.85 |
77.69; 41.01 |
36.67 |
-161.64 |
1.59 |
32.27 |
| tRNA |
3OUY |
1!D:31!D |
G:C |
WC [cWW][XIX] |
10.77 |
50.72; 52.53 |
1.81 |
-12.62 |
0.19 |
10.73 |
| tRNA |
3OUY |
2!D:30!D |
G:C |
WC [cWW][XIX] |
10.75 |
54.71; 60.85 |
6.14 |
-16.76 |
0.21 |
21.34 |
| tRNA |
3OUY |
3!D:29!D |
A:U |
WC [cWW][XX] |
10.6 |
57.64; 57.29 |
0.35 |
-10.7 |
0.07 |
12.65 |
| tRNA |
3OUY |
4!D:28!D |
A:U |
WC [cWW][XX] |
10.22 |
62.68; 59.81 |
2.86 |
-8.25 |
0.01 |
13.18 |
| tRNA |
3OUY |
5!D:27!D |
G:C |
WC_Mo [cWW][XIX] |
10.51 |
64.76; 64.73 |
0.03 |
-14.57 |
0.19 |
18.41 |
| tRNA |
3OUY |
6!D:26!D |
U:A |
WC [cWW][XX] |
10.16 |
58.16; 53.25 |
4.91 |
-14.61 |
0.04 |
25.84 |
| tRNA |
3OUY |
8!D:24!D |
G:U |
Wb [cWW][XXVIII] |
10.34 |
47.07; 63.63 |
16.56 |
-5.68 |
0.24 |
16.87 |
| tRNA |
3OUY |
9!D:23!D |
A:U |
WC [cWW][XX] |
9.57 |
71.81; 62.19 |
9.62 |
-2.89 |
0.34 |
18.71 |
| tRNA |
3OUY |
10!D:22!D |
U:A |
WC [cWW][XX] |
10.73 |
55.67; 55.48 |
0.18 |
-2.22 |
0.15 |
6.61 |
| tRNA |
3OUY |
11!D:21!D |
G:C |
WC [cWW][XIX] |
10.79 |
50.23; 53.36 |
3.13 |
-13.26 |
0.1 |
18.18 |
| tRNA |
3OUY |
12!D:20!D |
G:C |
WC [cWW][XIX] |
10.79 |
54.31; 54.47 |
0.17 |
-20.07 |
0.68 |
38.62 |
| tRNA |
3OUY |
14!D:16!D |
U:A |
S(sb:O2*-N7) [---][-] |
6.96 |
81.97; 38.47 |
43.5 |
-159.57 |
1.23 |
33.24 |