Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3OV7
BPC Identified: 27
Ambiguities: 0
| tRNA |
3OV7 |
1!C:31!C |
G:C |
WC [cWW][XIX] |
10.68 |
49.53; 55.42 |
5.89 |
-10.04 |
0.12 |
9.21 |
| tRNA |
3OV7 |
2!C:30!C |
G:C |
WC [cWW][XIX] |
10.39 |
51.99; 56.82 |
4.83 |
-8.96 |
0.0 |
12.71 |
| tRNA |
3OV7 |
3!C:29!C |
A:U |
WC [cWW][XX] |
10.32 |
54.93; 56.48 |
1.55 |
-7.07 |
0.08 |
12.58 |
| tRNA |
3OV7 |
4!C:28!C |
A:U |
WC [cWW][XX] |
10.17 |
60.66; 56.93 |
3.73 |
-4.29 |
0.0 |
7.82 |
| tRNA |
3OV7 |
5!C:27!C |
G:C |
Wb [---][-] |
10.05 |
55.79; 69.92 |
14.13 |
-11.7 |
0.01 |
16.36 |
| tRNA |
3OV7 |
6!C:26!C |
U:A |
WC [cWW][XX] |
9.83 |
65.62; 64.65 |
0.97 |
-14.87 |
0.5 |
29.97 |
| tRNA |
3OV7 |
7!C:25!C |
A:U |
WC [cWW][XX] |
10.58 |
57.57; 53.87 |
3.69 |
-9.09 |
0.19 |
10.61 |
| tRNA |
3OV7 |
8!C:24!C |
G:U |
Wb [cWW][XXVIII] |
10.07 |
43.07; 68.3 |
25.23 |
-10.12 |
0.54 |
18.21 |
| tRNA |
3OV7 |
9!C:23!C |
A:U |
WC [cWW][XX] |
10.25 |
55.12; 57.58 |
2.46 |
-2.2 |
0.23 |
10.2 |
| tRNA |
3OV7 |
10!C:22!C |
U:A |
WC [cWW][XX] |
10.76 |
54.77; 56.91 |
2.14 |
-8.23 |
0.06 |
15.99 |
| tRNA |
3OV7 |
11!C:21!C |
G:C |
WC [cWW][XIX] |
10.52 |
52.9; 56.33 |
3.43 |
-9.83 |
0.17 |
11.8 |
| tRNA |
3OV7 |
12!C:20!C |
G:C |
WC [cWW][XIX] |
10.67 |
52.8; 51.59 |
1.21 |
-9.79 |
0.26 |
16.22 |
| tRNA |
3OV7 |
13!C:17!C |
U:A |
rH_1 [tWH][XXIV] |
9.39 |
38.33; 20.24 |
18.09 |
177.98 |
0.19 |
9.29 |
| tRNA |
3OV7 |
14!C:16!C |
U:A |
S(sb:O2*-N7) [---][-] |
6.71 |
79.61; 40.84 |
38.77 |
-171.3 |
1.1 |
22.2 |
| tRNA |
3OV7 |
1!D:31!D |
G:C |
WC [cWW][XIX] |
10.69 |
51.48; 54.25 |
2.76 |
-10.73 |
0.19 |
16.41 |
| tRNA |
3OV7 |
2!D:30!D |
G:C |
Wb [---][-] |
10.25 |
53.07; 67.82 |
14.75 |
-4.66 |
0.09 |
8.59 |
| tRNA |
3OV7 |
3!D:29!D |
A:U |
WC [cWW][XX] |
10.75 |
51.12; 48.91 |
2.21 |
-4.68 |
0.09 |
9.87 |
| tRNA |
3OV7 |
4!D:28!D |
A:U |
Wb [---][-] |
10.58 |
48.11; 66.46 |
18.35 |
-10.18 |
0.15 |
24.03 |
| tRNA |
3OV7 |
5!D:27!D |
G:C |
WC_Mo [cWW][XIX] |
10.42 |
69.48; 65.7 |
3.77 |
-17.21 |
0.89 |
32.55 |
| tRNA |
3OV7 |
6!D:26!D |
U:A |
WC [cWW][XX] |
10.32 |
55.93; 58.93 |
2.99 |
-19.52 |
0.14 |
23.61 |
| tRNA |
3OV7 |
7!D:25!D |
A:U |
WC [cWW][XX] |
9.88 |
69.31; 64.16 |
5.15 |
-6.86 |
0.05 |
10.26 |
| tRNA |
3OV7 |
8!D:24!D |
G:U |
Wb [cWW][XXVIII] |
10.44 |
44.36; 69.39 |
25.02 |
-4.53 |
0.18 |
13.86 |
| tRNA |
3OV7 |
9!D:23!D |
A:U |
WC [cWW][XX] |
9.97 |
60.95; 64.77 |
3.81 |
-1.34 |
0.14 |
11.58 |
| tRNA |
3OV7 |
10!D:22!D |
U:A |
WC [cWW][XX] |
11.35 |
42.02; 52.23 |
10.21 |
-2.31 |
0.05 |
4.78 |
| tRNA |
3OV7 |
11!D:21!D |
G:C |
WC [cWW][XIX] |
10.83 |
56.78; 53.29 |
3.49 |
-8.2 |
0.25 |
7.93 |
| tRNA |
3OV7 |
12!D:20!D |
G:C |
WC [cWW][XIX] |
10.63 |
53.11; 51.08 |
2.04 |
-16.81 |
0.58 |
38.93 |
| tRNA |
3OV7 |
14!D:16!D |
U:A |
S(sb:O2*-N7) [---][-] |
6.85 |
81.19; 38.03 |
43.17 |
-178.24 |
1.6 |
19.9 |