Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3OVB
BPC Identified: 27
Ambiguities: 0
| tRNA |
3OVB |
1!C:31!C |
G:C |
WC [cWW][XIX] |
10.71 |
55.45; 54.91 |
0.53 |
-15.25 |
0.11 |
13.95 |
| tRNA |
3OVB |
2!C:30!C |
G:C |
WC [cWW][XIX] |
10.56 |
54.67; 56.23 |
1.55 |
-11.04 |
0.25 |
15.8 |
| tRNA |
3OVB |
3!C:29!C |
A:U |
WC [cWW][XX] |
10.56 |
58.68; 53.21 |
5.46 |
-8.68 |
0.21 |
12.78 |
| tRNA |
3OVB |
4!C:28!C |
A:U |
WC [cWW][XX] |
10.34 |
55.07; 56.47 |
1.39 |
-13.23 |
0.18 |
19.29 |
| tRNA |
3OVB |
5!C:27!C |
G:C |
Wb* [---][-] |
10.45 |
69.9; 57.84 |
12.05 |
-11.79 |
0.03 |
18.9 |
| tRNA |
3OVB |
6!C:26!C |
U:A |
WC [cWW][XX] |
10.07 |
61.98; 59.98 |
2.0 |
-12.0 |
0.19 |
19.84 |
| tRNA |
3OVB |
7!C:25!C |
A:U |
WC [cWW][XX] |
10.13 |
62.2; 56.49 |
5.71 |
-4.53 |
0.15 |
7.4 |
| tRNA |
3OVB |
8!C:24!C |
G:U |
Wb [cWW][XXVIII] |
10.29 |
42.09; 68.16 |
26.08 |
-5.61 |
0.15 |
10.78 |
| tRNA |
3OVB |
9!C:23!C |
A:U |
WC [cWW][XX] |
10.23 |
58.2; 58.12 |
0.08 |
-4.42 |
0.18 |
12.11 |
| tRNA |
3OVB |
10!C:22!C |
U:A |
WC [cWW][XX] |
10.5 |
54.75; 55.03 |
0.28 |
-6.95 |
0.24 |
8.95 |
| tRNA |
3OVB |
11!C:21!C |
G:C |
WC [cWW][XIX] |
10.65 |
53.62; 53.81 |
0.19 |
-13.81 |
0.03 |
14.31 |
| tRNA |
3OVB |
12!C:20!C |
G:C |
WC [cWW][XIX] |
10.81 |
54.23; 51.35 |
2.88 |
-8.64 |
0.39 |
16.84 |
| tRNA |
3OVB |
13!C:17!C |
U:A |
rH_1 [tWH][XXIV] |
9.37 |
34.08; 21.47 |
12.61 |
166.0 |
0.45 |
10.9 |
| tRNA |
3OVB |
14!C:16!C |
U:A |
S(sb:O2*-N7) [---][-] |
6.63 |
80.08; 41.33 |
38.75 |
-171.71 |
1.56 |
30.04 |
| tRNA |
3OVB |
1!D:31!D |
G:C |
WC [cWW][XIX] |
10.82 |
52.51; 53.1 |
0.59 |
-11.97 |
0.15 |
9.64 |
| tRNA |
3OVB |
2!D:30!D |
G:C |
WC [cWW][XIX] |
10.6 |
54.05; 54.78 |
0.73 |
-11.91 |
0.14 |
15.92 |
| tRNA |
3OVB |
3!D:29!D |
A:U |
WC [cWW][XX] |
10.61 |
53.27; 48.96 |
4.32 |
-10.68 |
0.07 |
18.47 |
| tRNA |
3OVB |
4!D:28!D |
A:U |
WC [cWW][XX] |
10.25 |
54.51; 66.62 |
12.11 |
-10.9 |
0.09 |
16.17 |
| tRNA |
3OVB |
5!D:27!D |
G:C |
WC [cWW][XIX] |
10.92 |
52.96; 59.93 |
6.97 |
-16.06 |
0.25 |
35.8 |
| tRNA |
3OVB |
6!D:26!D |
U:A |
WC [cWW][XX] |
10.64 |
56.11; 59.75 |
3.64 |
-9.39 |
0.32 |
16.85 |
| tRNA |
3OVB |
7!D:25!D |
A:U |
WC [cWW][XX] |
10.49 |
55.61; 56.31 |
0.7 |
-5.83 |
0.32 |
5.7 |
| tRNA |
3OVB |
8!D:24!D |
G:U |
Wb [cWW][XXVIII] |
10.39 |
41.83; 63.93 |
22.1 |
-4.54 |
0.01 |
8.5 |
| tRNA |
3OVB |
9!D:23!D |
A:U |
WC [cWW][XX] |
10.43 |
55.24; 57.83 |
2.6 |
-2.05 |
0.21 |
9.44 |
| tRNA |
3OVB |
10!D:22!D |
U:A |
WC [cWW][XX] |
10.7 |
51.01; 55.16 |
4.15 |
-4.4 |
0.1 |
7.53 |
| tRNA |
3OVB |
11!D:21!D |
G:C |
WC [cWW][XIX] |
10.78 |
52.22; 53.2 |
0.98 |
-12.33 |
0.0 |
14.11 |
| tRNA |
3OVB |
12!D:20!D |
G:C |
WC [cWW][XIX] |
10.61 |
53.04; 53.72 |
0.67 |
-18.77 |
0.71 |
30.56 |
| tRNA |
3OVB |
14!D:16!D |
U:A |
S(sb:O2*-N7) [---][-] |
6.67 |
76.2; 39.92 |
36.28 |
-167.94 |
1.05 |
28.2 |