Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3OXB BPC Identified: 86 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3OXB 1!A:88!A G:C WC [cWW][XIX] 10.81 55.67; 54.98 0.69 1.49 0.01 10.2
Riboswitch 3OXB 2!A:87!A G:U Wb [cWW][XXVIII] 10.85 46.51; 60.47 13.96 -7.03 0.05 12.67
Riboswitch 3OXB 3!A:86!A C:G WC [cWW][XIX] 10.79 50.84; 58.57 7.73 -5.25 0.29 26.87
Riboswitch 3OXB 4!A:85!A U:A WC [cWW][XX] 10.41 56.53; 55.38 1.16 -1.38 0.27 20.84
Riboswitch 3OXB 5!A:84!A C:G H* [---][-] 10.76 51.64; 55.73 4.09 -1.17 0.04 15.0
Riboswitch 3OXB 6!A:40!B U:A rpS(sb:O2*-N3) [cSS][-] 5.72 140.9; 98.09 42.81 -78.73 0.2 39.86
Riboswitch 3OXB 6!A:83!A U:A WC [cWW][XX] 9.97 63.4; 64.09 0.69 -7.69 0.09 14.23
Riboswitch 3OXB 7!A:64!B G:A rS [tSS][-] 8.09 96.21; 49.12 47.09 176.19 0.45 37.34
Riboswitch 3OXB 7!A:82!A G:C WC [cWW][XIX] 10.78 56.27; 54.07 2.2 -3.64 0.2 12.0
Riboswitch 3OXB 8!A:81!A G:A S [tSH][XI] 9.62 96.69; 8.32 88.37 -115.26 0.0 12.37
Riboswitch 3OXB 8!A:33!A G:A fS(sb:O2*-N1)_1 [---][-] 9.5 104.44; 39.99 64.45 166.24 2.22 18.09
Riboswitch 3OXB 9!A:80!A A:G S [tSH][XI] 9.34 13.46; 94.69 81.23 -104.49 0.16 21.19
Riboswitch 3OXB 10!A:31!A G:C rpS [cSS][-] 5.49 95.65; 156.58 60.94 -43.67 0.78 40.6
Riboswitch 3OXB 11!A:73!A A:G rS [tSS][-] 8.23 58.87; 88.17 29.3 158.35 0.73 31.72
Riboswitch 3OXB 11!A:30!A A:C rpS(bs:O2-O2*) [cSS][-] 5.66 154.68; 100.98 53.7 -36.93 1.19 15.98
Riboswitch 3OXB 12!A:28!A G:C WC [cWW][XIX] 10.6 57.74; 53.33 4.42 -6.59 0.1 9.61
Riboswitch 3OXB 14!A:27!A A:U WC [cWW][XX] 10.69 51.46; 50.29 1.18 -10.45 0.53 18.35
Riboswitch 3OXB 15!A:26!A C:G WC [cWW][XIX] 10.6 53.87; 50.76 3.11 -9.69 0.31 30.67
Riboswitch 3OXB 16!A:25!A C:G WC [cWW][XIX] 10.6 56.86; 50.46 6.4 -5.67 0.46 14.21
Riboswitch 3OXB 17!A:24!A G:C WC [cWW][XIX] 10.79 56.44; 50.4 6.04 -10.27 0.21 17.18
Riboswitch 3OXB 29!A:74!A G:C WC [cWW][XIX] 10.71 54.08; 56.92 2.84 -5.76 0.09 8.65
Riboswitch 3OXB 30!A:73!A C:G WC [cWW][XIX] 10.81 52.66; 57.36 4.69 -11.04 0.32 17.31
Riboswitch 3OXB 31!A:72!A C:G WC [cWW][XIX] 10.8 49.55; 56.12 6.57 -5.69 0.44 10.34
Riboswitch 3OXB 33!A:80!A A:G pfS(sb:O2*-N3) [---][-] 6.32 90.39; 141.44 51.05 -15.79 1.67 21.48
Riboswitch 3OXB 34!A:71!A A:A S [tSH][-] 9.83 2.57; 83.08 80.51 -20.3 0.49 9.86
Riboswitch 3OXB 35!A:70!A G:C WC [cWW][XIX] 10.75 49.2; 52.3 3.11 4.08 0.23 7.67
Riboswitch 3OXB 36!A:68!A G:C WC [cWW][XIX] 11.12 43.48; 53.07 9.59 -8.47 0.01 11.32
Riboswitch 3OXB 37!A:67!A A:U WC [cWW][XX] 10.61 57.19; 54.84 2.34 -12.65 0.08 15.5
Riboswitch 3OXB 38!A:66!A G:C WC [cWW][XIX] 10.86 54.06; 54.13 0.07 -7.3 0.3 11.45
Riboswitch 3OXB 39!A:64!A C:A rH_1 [rWH][XXV] 11.09 26.8; 11.85 14.95 -98.26 0.37 18.34
Riboswitch 3OXB 39!A:63!A C:A rH_2 [---][-] 9.61 34.24; 18.84 15.41 -121.62 2.11 27.01
Riboswitch 3OXB 40!A:6!B A:U rpS(sb:O2*-N3) [cSS][-] 5.68 91.79; 140.91 49.12 -75.91 0.24 43.14
Riboswitch 3OXB 40!A:62!A A:G S(bp:N1-O2P)_1 [---][-] 9.1 21.94; 80.94 59.0 132.98 1.84 16.4
Riboswitch 3OXB 41!A:84!B A:G rS [tSS][-] 8.0 59.66; 89.29 29.63 174.66 0.12 33.0
Riboswitch 3OXB 41!A:5!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.57 146.61; 101.6 45.0 -55.57 0.67 38.06
Riboswitch 3OXB 41!A:62!A A:G S [tSH][XI] 9.51 7.38; 103.85 96.48 -21.11 0.45 17.57
Riboswitch 3OXB 42!A:61!A G:U Wb [cWW][XXVIII] 10.57 45.15; 62.58 17.43 -7.35 0.49 17.81
Riboswitch 3OXB 43!A:60!A C:G WC [cWW][XIX] 11.07 46.34; 49.56 3.22 -8.52 0.59 18.7
Riboswitch 3OXB 44!A:59!A U:A WC [cWW][XX] 11.49 44.43; 38.52 5.92 -4.99 0.2 8.26
Riboswitch 3OXB 45!A:58!A C:G WC [cWW][XIX] 11.23 45.88; 44.5 1.38 -11.78 0.27 16.28
Riboswitch 3OXB 46!A:57!A U:A WC [cWW][XX] 10.54 55.27; 48.34 6.93 -12.09 0.04 15.84
Riboswitch 3OXB 47!A:56!A G:C WC [cWW][XIX] 10.56 54.79; 57.14 2.35 -9.09 0.02 21.48
Riboswitch 3OXB 48!A:55!A C:G WC [cWW][XIX] 10.53 55.23; 53.47 1.76 -4.52 0.27 13.63
Riboswitch 3OXB 49!A:54!A G:C WC [cWW][XIX] 10.63 53.43; 57.79 4.36 -1.52 0.13 7.23
Riboswitch 3OXB 50!A:53!A G:A S [tSH][XI] 9.54 96.2; 13.97 82.23 -99.89 0.72 18.82
Riboswitch 3OXB 50!A:52!A G:A S(sb:O2*-N7) [---][-] 7.57 86.15; 34.42 51.73 -168.36 2.48 33.42
Riboswitch 3OXB 63!A:83!B A:A rpS(sb:O2*-N3) [cSS][-] 5.55 98.18; 132.4 34.21 -85.1 0.29 47.6
Riboswitch 3OXB 64!A:7!B A:G rS [tSS][-] 8.16 52.44; 95.24 42.8 177.3 0.21 38.5
Riboswitch 3OXB 83!A:63!B A:A rpS(sb:O2*-N3) [cSS][-] 5.73 137.7; 96.76 40.94 -81.29 0.29 46.38
Riboswitch 3OXB 84!A:41!B G:A rS [tSS][-] 7.96 89.84; 59.95 29.9 176.26 0.21 36.94
Riboswitch 3OXB 1!B:88!B G:C WC [cWW][XIX] 11.04 47.93; 48.12 0.19 4.22 0.13 11.09
Riboswitch 3OXB 2!B:87!B G:U Wb [cWW][XXVIII] 10.42 46.3; 69.26 22.96 -9.5 0.12 12.52
Riboswitch 3OXB 3!B:86!B C:G WC [cWW][XIX] 10.71 50.06; 57.36 7.31 -8.47 0.53 23.35
Riboswitch 3OXB 4!B:85!B U:A WC [cWW][XX] 10.59 54.71; 56.96 2.24 -5.19 0.26 10.49
Riboswitch 3OXB 5!B:84!B C:G WC [cWW][XIX] 10.69 56.5; 53.24 3.26 -3.62 0.01 14.06
Riboswitch 3OXB 6!B:83!B U:A WC [cWW][XX] 9.97 61.22; 62.1 0.88 -10.24 0.01 15.36
Riboswitch 3OXB 7!B:82!B G:C WC [cWW][XIX] 10.6 55.24; 53.56 1.68 -4.2 0.02 11.4
Riboswitch 3OXB 8!B:81!B G:A S [tSH][XI] 9.55 94.51; 10.7 83.82 -124.92 0.16 16.02
Riboswitch 3OXB 8!B:33!B G:A rS(sb:O2*-N1)_2 [---][-] 9.4 100.64; 41.23 59.42 167.34 1.79 20.16
Riboswitch 3OXB 9!B:80!B A:G S [tSH][XI] 9.56 15.6; 93.28 77.68 -98.73 0.57 20.52
Riboswitch 3OXB 10!B:31!B G:C rpS [cSS][-] 5.46 95.45; 157.53 62.08 -46.56 0.6 42.63
Riboswitch 3OXB 11!B:73!B A:G rS [tSS][-] 8.34 56.1; 84.67 28.57 154.96 0.84 38.08
Riboswitch 3OXB 12!B:28!B G:C WC [cWW][XIX] 10.53 52.52; 59.01 6.49 -3.42 0.38 11.32
Riboswitch 3OXB 14!B:27!B A:U WC [cWW][XX] 10.71 51.21; 51.04 0.17 -10.55 0.13 18.22
Riboswitch 3OXB 15!B:26!B C:G WC [cWW][XIX] 10.59 54.19; 54.56 0.37 -12.17 0.45 23.56
Riboswitch 3OXB 16!B:25!B C:G WC [cWW][XIX] 10.71 54.57; 52.04 2.53 -4.85 0.41 12.66
Riboswitch 3OXB 17!B:24!B G:C WC [cWW][XIX] 10.65 57.43; 53.49 3.94 -7.82 0.58 18.4
Riboswitch 3OXB 29!B:74!B G:C WC [cWW][XIX] 10.86 53.16; 50.12 3.04 -6.21 0.07 11.5
Riboswitch 3OXB 30!B:73!B C:G WC [cWW][XIX] 10.7 52.53; 54.26 1.73 -13.91 0.32 29.38
Riboswitch 3OXB 31!B:72!B C:G WC [cWW][XIX] 10.68 53.82; 53.58 0.24 -8.79 0.3 12.89
Riboswitch 3OXB 33!B:80!B A:G pfS(sb:O2*-N3) [---][-] 6.25 93.81; 141.72 47.91 -10.19 2.08 16.29
Riboswitch 3OXB 34!B:71!B A:A S [tSH][-] 9.5 4.67; 89.45 84.78 9.29 0.29 4.49
Riboswitch 3OXB 35!B:70!B G:C WC [cWW][XIX] 10.67 51.1; 54.64 3.54 2.99 0.1 3.79
Riboswitch 3OXB 36!B:68!B G:C WC [cWW][XIX] 10.82 50.7; 52.09 1.39 -8.2 0.35 15.02
Riboswitch 3OXB 37!B:67!B A:U WC [cWW][XX] 10.43 60.23; 57.87 2.36 -12.91 0.21 21.89
Riboswitch 3OXB 38!B:66!B G:C WC [cWW][XIX] 10.48 56.16; 57.61 1.44 -9.09 0.8 20.53
Riboswitch 3OXB 39!B:63!B C:A rS* [tHH][-] 9.33 33.85; 19.86 13.99 -109.87 2.2 31.11
Riboswitch 3OXB 40!B:62!B A:G S(bp:N1-O2P)_1 [---][-] 9.14 18.5; 75.57 57.07 121.74 2.17 16.31
Riboswitch 3OXB 41!B:62!B A:G S [tSH][XI] 9.38 7.48; 98.78 91.3 -13.01 0.53 13.47
Riboswitch 3OXB 42!B:61!B G:U Wb [cWW][XXVIII] 10.47 42.94; 68.82 25.89 1.38 0.06 7.61
Riboswitch 3OXB 43!B:60!B C:G WC [cWW][XIX] 10.54 57.5; 55.75 1.75 -7.47 0.38 21.29
Riboswitch 3OXB 44!B:59!B U:A WC [cWW][XX] 10.86 51.02; 57.84 6.82 -3.44 0.17 15.28
Riboswitch 3OXB 45!B:58!B C:G WC_Mo [cWW][XIX] 11.09 60.11; 55.14 4.97 -11.02 0.19 12.86
Riboswitch 3OXB 47!B:56!B G:C WC [cWW][XIX] 10.73 52.88; 57.25 4.37 -6.16 0.05 7.47
Riboswitch 3OXB 48!B:55!B C:G WC [cWW][XIX] 10.57 57.43; 53.51 3.92 -6.86 0.13 10.94
Riboswitch 3OXB 49!B:54!B G:C WC [cWW][XIX] 10.61 55.31; 54.17 1.14 2.62 0.42 4.75