Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3OXD BPC Identified: 90 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3OXD 1!A:88!A G:C WC [cWW][XIX] 10.96 54.82; 50.96 3.86 -0.1 0.27 5.99
Riboswitch 3OXD 2!A:87!A G:U Wb [cWW][XXVIII] 10.8 45.83; 60.16 14.33 -5.57 0.09 11.0
Riboswitch 3OXD 3!A:86!A C:G WC [cWW][XIX] 10.81 52.29; 54.9 2.62 -5.79 0.14 25.11
Riboswitch 3OXD 4!A:85!A U:!A WC [cWW][XX] 10.53 55.28; 56.53 1.25 -1.47 0.0 13.36
Riboswitch 3OXD 5!A:41!B C:!A rpS(ss:O2*-O2*)_1 [cSS][-] 6.28 101.62; 148.49 46.87 -55.51 0.89 39.23
Riboswitch 3OXD 5!A:84!A C:G WC [cWW][XIX] 10.72 56.98; 55.38 1.6 -2.65 0.09 14.43
Riboswitch 3OXD 6!A:40!B U:!A rpS(sb:O2*-N3) [cSS][-] 5.69 140.25; 96.32 43.93 -75.47 0.31 33.41
Riboswitch 3OXD 6!A:83!A U:!A WC [cWW][XX] 10.08 61.69; 61.39 0.3 -6.3 0.25 19.41
Riboswitch 3OXD 7!A:64!B G:!A rS [tSS][-] 8.1 94.78; 52.72 42.06 179.09 0.18 41.36
Riboswitch 3OXD 7!A:82!A G:C WC [cWW][XIX] 10.71 53.49; 57.1 3.61 0.69 0.22 5.04
Riboswitch 3OXD 8!A:81!A G:!A S [tSH][XI] 9.53 94.57; 9.5 85.07 -108.26 0.33 12.21
Riboswitch 3OXD 8!A:33!A G:!A fS(sb:O2*-N1)_1 [---][-] 9.67 102.56; 39.19 63.37 171.81 2.23 17.35
Riboswitch 3OXD 9!A:80!A !A:G S [tSH][XI] 9.51 14.08; 94.0 79.92 -102.22 0.13 21.49
Riboswitch 3OXD 10!A:31!A G:C rpS [cSS][-] 5.47 94.76; 157.05 62.28 -43.72 0.93 44.67
Riboswitch 3OXD 11!A:73!A !A:G rS [tSS][-] 8.31 57.03; 86.97 29.94 155.27 0.77 36.59
Riboswitch 3OXD 11!A:30!A !A:C rpS(bs:O2-O2*) [cSS][-] 5.73 148.85; 106.01 42.84 -36.02 1.2 19.1
Riboswitch 3OXD 12!A:28!A G:C WC [cWW][XIX] 10.43 58.47; 60.0 1.54 -5.33 0.02 10.74
Riboswitch 3OXD 14!A:27!A !A:U WC [cWW][XX] 10.44 52.69; 57.65 4.96 -8.61 0.52 18.0
Riboswitch 3OXD 15!A:26!A C:G WC [cWW][XIX] 10.89 51.58; 49.93 1.65 -10.64 0.25 25.64
Riboswitch 3OXD 16!A:25!A C:G WC [cWW][XIX] 10.73 57.03; 48.62 8.41 -10.39 0.14 16.41
Riboswitch 3OXD 17!A:24!A G:C WC [cWW][XIX] 10.83 56.21; 55.05 1.15 -11.91 0.43 19.76
Riboswitch 3OXD 29!A:74!A G:C WC [cWW][XIX] 10.83 53.4; 52.67 0.73 -4.76 0.26 10.1
Riboswitch 3OXD 30!A:73!A C:G WC [cWW][XIX] 10.65 55.47; 54.93 0.54 -13.3 0.27 18.44
Riboswitch 3OXD 31!A:72!A C:G WC [cWW][XIX] 10.79 50.78; 52.77 1.99 -5.54 0.26 9.86
Riboswitch 3OXD 33!A:80!A !A:G pfS(sb:O2*-N3) [---][-] 6.43 90.13; 142.17 52.04 -13.55 1.61 22.17
Riboswitch 3OXD 34!A:71!A !A:!A S [tSH][-] 9.78 4.35; 89.73 85.38 11.91 0.01 6.73
Riboswitch 3OXD 35!A:70!A C:G WC [cWW][XIX] 10.8 49.17; 53.86 4.69 4.77 0.07 6.08
Riboswitch 3OXD 36!A:68!A G:C WC [cWW][XIX] 10.87 47.71; 52.21 4.51 -7.31 0.16 11.01
Riboswitch 3OXD 37!A:67!A !A:U WC [cWW][XX] 10.18 60.55; 56.78 3.77 -12.69 0.05 16.95
Riboswitch 3OXD 38!A:66!A G:C WC [cWW][XIX] 10.62 55.9; 56.22 0.32 -7.29 0.66 16.24
Riboswitch 3OXD 39!A:64!A C:!A rH_1 [rWH][XXV] 11.03 28.7; 12.79 15.92 -106.43 0.73 20.28
Riboswitch 3OXD 40!A:84!B !A:G fS(sb:O2*-N6) [---][-] 8.51 37.51; 101.9 64.39 175.97 1.81 42.79
Riboswitch 3OXD 40!A:6!B !A:U rpS(sb:O2*-N3) [cSS][-] 5.38 97.79; 142.71 44.93 -73.82 0.33 40.18
Riboswitch 3OXD 40!A:62!A !A:G S(bp:N1-O2P)_1 [---][-] 9.12 19.42; 78.51 59.09 133.73 1.57 19.39
Riboswitch 3OXD 41!A:84!B !A:G rS [tSS][-] 7.99 59.13; 87.67 28.55 173.52 0.24 32.42
Riboswitch 3OXD 41!A:5!B !A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.51 147.48; 100.61 46.87 -54.29 0.61 36.63
Riboswitch 3OXD 41!A:62!A !A:G S [tSH][XI] 9.53 5.8; 98.53 92.72 -22.95 0.38 14.92
Riboswitch 3OXD 42!A:61!A G:U Wb [cWW][XXVIII] 10.77 43.88; 58.4 14.52 -5.57 0.49 16.49
Riboswitch 3OXD 43!A:60!A C:G WC [cWW][XIX] 10.89 48.53; 53.08 4.55 -10.36 0.68 22.14
Riboswitch 3OXD 44!A:59!A U:!A WC [cWW][XX] 11.29 45.46; 42.49 2.97 -5.65 0.1 8.54
Riboswitch 3OXD 45!A:58!A C:G WC [cWW][XIX] 10.93 51.64; 43.46 8.18 -13.93 0.25 18.75
Riboswitch 3OXD 46!A:57!A U:!A WC [cWW][XX] 10.52 55.37; 52.77 2.61 -8.0 0.08 12.49
Riboswitch 3OXD 47!A:56!A G:C WC [cWW][XIX] 10.54 56.74; 56.41 0.33 -8.0 0.06 20.46
Riboswitch 3OXD 48!A:55!A C:G WC [cWW][XIX] 10.46 57.02; 51.76 5.25 -6.21 0.15 12.28
Riboswitch 3OXD 49!A:54!A G:C WC [cWW][XIX] 10.7 56.44; 55.0 1.45 -3.82 0.24 8.23
Riboswitch 3OXD 50!A:53!A G:!A S [tSH][XI] 9.53 94.49; 14.43 80.07 -105.87 0.7 18.59
Riboswitch 3OXD 50!A:52!A G:!A S(sb:O2*-N7) [---][-] 7.56 84.58; 34.23 50.35 -169.17 2.4 32.07
Riboswitch 3OXD 63!A:83!B !A:!A rpS(sb:O2*-N3) [cSS][-] 5.62 96.84; 132.17 35.33 -78.93 0.29 48.0
Riboswitch 3OXD 64!A:7!B !A:G rS [tSS][-] 8.07 49.87; 94.01 44.14 176.85 0.33 38.81
Riboswitch 3OXD 83!A:63!B !A:!A rpS(sb:O2*-N3) [cSS][-] 5.69 134.28; 96.72 37.57 -77.52 0.63 48.53
Riboswitch 3OXD 84!A:41!B G:!A rS [tSS][-] 7.92 89.43; 58.58 30.85 173.78 0.2 36.92
Riboswitch 3OXD 85!A:42!B !A:G rS(ss:O2*-O2*)_1 [---][-] 4.97 148.84; 118.43 30.41 -113.87 2.21 67.13
Riboswitch 3OXD 1!B:88!B G:C WC [cWW][XIX] 10.97 53.1; 47.48 5.62 4.35 0.01 11.95
Riboswitch 3OXD 2!B:87!B G:U Wb [cWW][XXVIII] 10.48 42.35; 67.78 25.43 -7.77 0.03 12.64
Riboswitch 3OXD 3!B:86!B C:G WC [cWW][XIX] 10.68 51.98; 56.46 4.48 -9.69 0.39 25.99
Riboswitch 3OXD 4!B:85!B U:!A WC [cWW][XX] 10.61 53.03; 54.39 1.36 -2.94 0.12 8.32
Riboswitch 3OXD 5!B:84!B C:G WC [cWW][XIX] 10.78 55.61; 52.24 3.37 -2.65 0.09 13.06
Riboswitch 3OXD 6!B:83!B U:!A WC [cWW][XX] 9.95 61.56; 60.12 1.44 -8.89 0.19 14.93
Riboswitch 3OXD 7!B:82!B G:C WC [cWW][XIX] 10.6 53.15; 55.29 2.14 -4.73 0.05 13.01
Riboswitch 3OXD 8!B:81!B G:!A S [tSH][XI] 9.54 92.5; 9.68 82.82 -125.21 0.02 12.13
Riboswitch 3OXD 9!B:80!B !A:G S [tSH][XI] 9.43 13.1; 92.33 79.24 -103.53 0.64 17.41
Riboswitch 3OXD 10!B:31!B G:C rpS [cSS][-] 5.35 96.08; 156.39 60.31 -39.06 0.9 46.15
Riboswitch 3OXD 11!B:73!B !A:G rS [tSS][-] 8.31 58.31; 84.08 25.77 152.89 0.99 37.75
Riboswitch 3OXD 11!B:30!B !A:C rpS(bs:O2-O2*) [cSS][-] 5.45 151.89; 102.11 49.78 -37.18 2.29 17.41
Riboswitch 3OXD 12!B:28!B G:C WC [cWW][XIX] 10.55 54.75; 56.96 2.21 -4.21 0.18 12.86
Riboswitch 3OXD 14!B:27!B !A:U WC [cWW][XX] 10.77 49.06; 51.43 2.36 -12.06 0.09 19.89
Riboswitch 3OXD 15!B:26!B C:G WC [cWW][XIX] 10.62 54.7; 54.11 0.59 -12.98 0.2 25.86
Riboswitch 3OXD 16!B:25!B C:G WC [cWW][XIX] 10.75 54.67; 52.47 2.19 -5.94 0.32 13.19
Riboswitch 3OXD 17!B:24!B G:C WC [cWW][XIX] 10.7 55.4; 51.02 4.38 -6.3 0.47 17.37
Riboswitch 3OXD 18!B:24!B U:C Wb* [---][-] 8.84 40.09; 75.46 35.37 -24.46 2.67 3.83
Riboswitch 3OXD 29!B:74!B G:C WC [cWW][XIX] 10.8 53.24; 51.9 1.34 -6.85 0.13 12.15
Riboswitch 3OXD 30!B:73!B C:G WC [cWW][XIX] 10.66 51.87; 54.19 2.32 -13.27 0.32 26.88
Riboswitch 3OXD 31!B:72!B C:G WC [cWW][XIX] 10.88 52.54; 53.32 0.79 -5.92 0.32 11.14
Riboswitch 3OXD 33!B:80!B !A:G pfS(sb:O2*-N3) [---][-] 6.39 91.79; 141.06 49.27 -9.54 2.0 15.64
Riboswitch 3OXD 34!B:71!B !A:!A S [tSH][-] 9.6 5.4; 88.37 82.97 -0.59 0.23 6.53
Riboswitch 3OXD 35!B:70!B C:G WC [cWW][XIX] 10.69 53.97; 53.88 0.08 4.38 0.33 3.31
Riboswitch 3OXD 36!B:68!B G:C WC [cWW][XIX] 10.84 53.45; 51.9 1.55 -8.38 0.02 14.37
Riboswitch 3OXD 37!B:67!B !A:U WC [cWW][XX] 10.19 60.56; 59.83 0.73 -9.6 0.1 20.77
Riboswitch 3OXD 38!B:66!B G:C WC [cWW][XIX] 10.61 52.64; 56.31 3.67 -6.03 0.6 15.82
Riboswitch 3OXD 39!B:64!B C:!A rH_1 [rWH][XXV] 10.9 26.92; 12.17 14.74 -99.96 0.66 20.49
Riboswitch 3OXD 40!B:62!B !A:G S(bp:N1-O2P)_1 [---][-] 9.29 20.65; 74.04 53.39 127.17 2.05 15.94
Riboswitch 3OXD 41!B:62!B !A:G S [tSH][XI] 9.57 4.96; 97.46 92.5 -12.37 0.47 15.58
Riboswitch 3OXD 42!B:61!B G:U Wb [cWW][XXVIII] 10.55 41.64; 68.8 27.16 -1.85 0.38 11.63
Riboswitch 3OXD 43!B:60!B C:G WC [cWW][XIX] 10.61 54.08; 52.62 1.46 -8.42 0.5 17.46
Riboswitch 3OXD 44!B:59!B U:!A WC [cWW][XX] 10.75 48.46; 56.36 7.9 -5.98 0.03 14.29
Riboswitch 3OXD 45!B:58!B C:G WC [cWW][XIX] 11.4 47.51; 47.5 0.01 -10.29 0.25 15.16
Riboswitch 3OXD 46!B:57!B U:!A WC [cWW][XX] 10.91 53.25; 54.05 0.81 -13.72 0.34 14.91
Riboswitch 3OXD 47!B:56!B G:C WC [cWW][XIX] 10.83 55.86; 52.41 3.45 -7.49 0.14 11.61
Riboswitch 3OXD 48!B:55!B C:G WC [cWW][XIX] 10.72 52.16; 53.45 1.29 -7.36 0.0 10.8
Riboswitch 3OXD 49!B:54!B G:C WC [cWW][XIX] 10.75 51.46; 52.5 1.04 2.26 0.42 2.65