Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3OXE BPC Identified: 93 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3OXE 1!A:88!A G:C WC [cWW][XIX] 11.21 47.29; 55.66 8.37 0.18 0.2 3.88
Riboswitch 3OXE 2!A:87!A G:U Wb [cWW][XXVIII] 10.85 42.45; 59.83 17.38 -9.05 0.07 15.96
Riboswitch 3OXE 3!A:86!A C:G WC [cWW][XIX] 10.75 51.2; 57.7 6.51 -9.56 0.28 29.41
Riboswitch 3OXE 4!A:85!A U:A WC [cWW][XX] 10.48 55.71; 59.2 3.49 -4.59 0.15 11.74
Riboswitch 3OXE 5!A:41!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.39 100.66; 149.39 48.73 -54.68 0.64 36.18
Riboswitch 3OXE 5!A:84!A C:G WC [cWW][XIX] 10.67 56.11; 56.32 0.21 -2.72 0.16 13.46
Riboswitch 3OXE 6!A:40!B U:A rpS(sb:O2*-N3) [cSS][-] 5.69 142.31; 94.14 48.17 -73.84 0.11 37.5
Riboswitch 3OXE 6!A:83!A U:A WC [cWW][XX] 9.99 62.22; 60.57 1.65 -4.99 0.01 12.18
Riboswitch 3OXE 7!A:64!B G:A rS [tSS][-] 8.02 95.44; 49.14 46.3 179.1 0.32 36.9
Riboswitch 3OXE 7!A:82!A G:C WC [cWW][XIX] 10.7 55.91; 52.83 3.08 -1.91 0.07 7.48
Riboswitch 3OXE 8!A:81!A G:A S [tSH][XI] 9.36 98.19; 7.45 90.75 -86.28 0.37 13.27
Riboswitch 3OXE 8!A:33!A G:A fS(sb:O2*-N1)_1 [---][-] 9.54 107.92; 40.26 67.66 171.69 2.41 18.21
Riboswitch 3OXE 9!A:80!A A:G S [tSH][XI] 9.51 16.03; 91.68 75.65 -106.21 0.07 25.22
Riboswitch 3OXE 10!A:31!A G:C rpS [cSS][-] 5.71 94.06; 158.07 64.01 -48.28 0.71 44.06
Riboswitch 3OXE 11!A:73!A A:G rS [tSS][-] 8.36 56.14; 89.55 33.41 156.81 0.98 32.69
Riboswitch 3OXE 11!A:30!A A:C rpS(bs:O2-O2*) [cSS][-] 5.71 150.07; 102.83 47.23 -32.73 1.72 12.61
Riboswitch 3OXE 12!A:28!A G:C WC [cWW][XIX] 10.75 54.07; 51.75 2.32 -7.53 0.11 14.01
Riboswitch 3OXE 14!A:27!A A:U WC [cWW][XX] 10.52 53.15; 57.3 4.15 -10.36 0.2 18.26
Riboswitch 3OXE 15!A:26!A C:G WC [cWW][XIX] 10.49 56.71; 49.09 7.61 -14.09 0.67 28.71
Riboswitch 3OXE 16!A:25!A C:G WC [cWW][XIX] 10.64 55.79; 54.37 1.42 -8.19 0.29 14.8
Riboswitch 3OXE 17!A:24!A G:C WC [cWW][XIX] 10.85 57.09; 51.97 5.12 -9.72 0.19 19.4
Riboswitch 3OXE 29!A:74!A G:C WC [cWW][XIX] 10.79 52.41; 52.52 0.12 -5.69 0.13 11.54
Riboswitch 3OXE 30!A:73!A C:G WC [cWW][XIX] 10.77 52.76; 58.12 5.36 -13.34 0.18 22.09
Riboswitch 3OXE 31!A:72!A C:G WC [cWW][XIX] 10.74 54.04; 51.88 2.16 -5.74 0.2 9.33
Riboswitch 3OXE 33!A:80!A A:G pfS(sb:O2*-N3) [---][-] 6.4 91.85; 139.51 47.66 -9.22 1.4 26.87
Riboswitch 3OXE 34!A:71!A A:A S [tSH][-] 9.77 3.1; 85.04 81.93 64.62 0.01 5.71
Riboswitch 3OXE 35!A:70!A G:C WC [cWW][XIX] 10.78 48.1; 52.62 4.52 5.37 0.04 5.63
Riboswitch 3OXE 36!A:68!A G:C WC [cWW][XIX] 10.79 51.19; 54.6 3.41 -7.45 0.36 13.51
Riboswitch 3OXE 37!A:67!A A:U WC [cWW][XX] 10.01 59.88; 63.37 3.49 -18.59 0.23 27.89
Riboswitch 3OXE 38!A:66!A G:C WC [cWW][XIX] 10.85 51.96; 50.75 1.21 -5.92 0.15 11.42
Riboswitch 3OXE 39!A:64!A C:A rH_1 [rWH][XXV] 10.99 28.3; 11.53 16.77 -99.8 0.51 18.78
Riboswitch 3OXE 40!A:84!B A:G fS(sb:O2*-N6) [---][-] 8.6 32.65; 105.02 72.37 177.49 0.79 45.0
Riboswitch 3OXE 40!A:6!B A:U rpS(sb:O2*-N3) [cSS][-] 5.74 92.01; 139.29 47.28 -73.28 0.08 40.97
Riboswitch 3OXE 40!A:62!A A:G S(bp:N1-O2P)_1 [---][-] 9.05 23.05; 77.02 53.98 137.2 2.42 11.19
Riboswitch 3OXE 41!A:84!B A:G rS [tSS][-] 8.13 57.69; 89.77 32.08 174.81 0.28 33.61
Riboswitch 3OXE 41!A:5!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.52 145.3; 101.56 43.74 -52.62 1.14 40.65
Riboswitch 3OXE 41!A:62!A A:G S [tSH][XI] 9.5 6.58; 98.37 91.79 -4.35 0.32 12.31
Riboswitch 3OXE 42!A:61!A G:U Wb [cWW][XXVIII] 10.4 44.18; 70.48 26.3 -5.2 0.5 17.34
Riboswitch 3OXE 43!A:60!A C:G WC [cWW][XIX] 10.74 50.34; 52.45 2.12 -8.01 0.76 20.47
Riboswitch 3OXE 44!A:59!A U:A WC [cWW][XX] 10.65 49.58; 53.36 3.78 -5.8 0.14 10.06
Riboswitch 3OXE 45!A:58!A C:G WC [cWW][XIX] 10.75 52.74; 47.07 5.67 -10.89 0.25 15.66
Riboswitch 3OXE 46!A:57!A U:A WC [cWW][XX] 10.35 55.91; 55.98 0.07 -8.39 0.08 11.62
Riboswitch 3OXE 47!A:56!A G:C WC [cWW][XIX] 10.58 55.01; 56.99 1.98 -7.6 0.11 19.13
Riboswitch 3OXE 48!A:55!A C:G WC [cWW][XIX] 10.49 57.28; 56.04 1.24 -6.27 0.28 16.02
Riboswitch 3OXE 49!A:54!A G:C WC [cWW][XIX] 10.6 56.07; 56.08 0.01 -2.91 0.08 6.26
Riboswitch 3OXE 50!A:53!A G:A S [tSH][XI] 9.47 99.21; 14.7 84.51 -107.52 0.38 20.07
Riboswitch 3OXE 50!A:52!A G:A S(sb:O2*-N7) [---][-] 7.49 88.26; 38.17 50.09 -172.77 2.38 33.57
Riboswitch 3OXE 63!A:83!B A:A rpS(sb:O2*-N3) [cSS][-] 5.72 99.18; 132.36 33.19 -81.19 0.17 47.35
Riboswitch 3OXE 64!A:7!B A:G rS [tSS][-] 8.15 51.36; 94.34 42.98 177.95 0.15 36.51
Riboswitch 3OXE 69!A:70!A U:C pS [cSH][-] 6.97 138.12; 39.24 98.88 15.99 0.48 12.65
Riboswitch 3OXE 83!A:63!B A:A rpS(sb:O2*-N3) [cSS][-] 5.73 134.41; 98.42 36.0 -76.33 0.44 46.94
Riboswitch 3OXE 84!A:41!B G:A rS [tSS][-] 7.84 91.41; 59.87 31.54 174.51 0.3 31.55
Riboswitch 3OXE 84!A:40!B G:A fS(sb:O2*-N6) [---][-] 8.55 106.94; 35.21 71.73 -179.93 1.65 42.52
Riboswitch 3OXE 1!B:88!B G:C WC [cWW][XIX] 10.88 48.81; 51.28 2.47 1.63 0.3 10.16
Riboswitch 3OXE 2!B:87!B G:U Wb [cWW][XXVIII] 10.23 43.63; 73.92 30.28 -7.92 0.01 12.68
Riboswitch 3OXE 3!B:86!B C:G WC [cWW][XIX] 10.77 48.64; 55.76 7.12 -8.85 0.58 22.41
Riboswitch 3OXE 4!B:85!B U:A WC [cWW][XX] 10.56 52.76; 56.67 3.91 -6.67 0.25 12.65
Riboswitch 3OXE 5!B:84!B C:G WC [cWW][XIX] 10.75 55.87; 54.12 1.75 -4.89 0.04 12.5
Riboswitch 3OXE 6!B:83!B U:A WC [cWW][XX] 10.02 60.83; 60.21 0.62 -8.03 0.13 15.81
Riboswitch 3OXE 7!B:82!B G:C WC [cWW][XIX] 10.63 54.63; 54.19 0.44 -3.77 0.06 10.09
Riboswitch 3OXE 8!B:81!B G:A S [tSH][XI] 9.47 95.96; 7.01 88.95 -101.68 0.11 10.7
Riboswitch 3OXE 8!B:33!B G:A fS(sb:O2*-N1)_1 [---][-] 9.49 103.67; 41.35 62.32 168.14 2.26 17.48
Riboswitch 3OXE 9!B:80!B A:G S [tSH][XI] 9.35 17.15; 94.61 77.46 -96.06 0.74 22.29
Riboswitch 3OXE 10!B:31!B G:C rpS [cSS][-] 5.44 96.54; 156.52 59.98 -48.52 0.37 38.84
Riboswitch 3OXE 11!B:73!B A:G rS [tSS][-] 8.25 58.45; 85.23 26.78 152.77 1.08 37.64
Riboswitch 3OXE 11!B:30!B A:C rpS(bs:O2-O2*) [cSS][-] 5.7 148.34; 104.28 44.06 -42.84 2.02 15.57
Riboswitch 3OXE 12!B:28!B G:C WC [cWW][XIX] 10.54 53.17; 57.35 4.18 -4.57 0.26 10.12
Riboswitch 3OXE 14!B:27!B A:U WC [cWW][XX] 10.77 52.61; 51.67 0.94 -11.64 0.33 18.38
Riboswitch 3OXE 15!B:26!B C:G WC [cWW][XIX] 10.48 56.49; 54.75 1.73 -13.6 0.58 23.35
Riboswitch 3OXE 16!B:25!B C:G WC [cWW][XIX] 10.71 55.4; 52.79 2.61 -7.94 0.25 15.65
Riboswitch 3OXE 17!B:24!B G:C WC [cWW][XIX] 10.72 59.04; 52.34 6.7 -9.0 0.34 18.25
Riboswitch 3OXE 18!B:24!B U:C Wb* [---][-] 8.85 42.32; 76.99 34.67 -20.4 2.7 8.4
Riboswitch 3OXE 29!B:74!B G:C WC [cWW][XIX] 10.74 52.08; 52.54 0.46 -4.65 0.02 12.53
Riboswitch 3OXE 30!B:73!B C:G WC [cWW][XIX] 10.61 54.07; 53.2 0.88 -13.42 0.19 24.35
Riboswitch 3OXE 31!B:72!B C:G WC [cWW][XIX] 10.75 53.57; 53.03 0.55 -8.43 0.25 12.28
Riboswitch 3OXE 33!B:80!B A:G pfS(sb:O2*-N3) [---][-] 6.17 94.01; 144.46 50.45 -4.84 1.64 20.68
Riboswitch 3OXE 34!B:71!B A:A S [tSH][-] 9.53 3.22; 86.05 82.83 29.87 0.27 5.04
Riboswitch 3OXE 35!B:70!B G:C WC [cWW][XIX] 10.76 49.34; 52.12 2.78 8.15 0.19 6.3
Riboswitch 3OXE 36!B:68!B G:C WC [cWW][XIX] 10.72 52.87; 55.38 2.51 -10.18 0.44 17.54
Riboswitch 3OXE 37!B:67!B A:U WC [cWW][XX] 9.9 65.03; 63.91 1.11 -21.0 0.03 30.18
Riboswitch 3OXE 38!B:66!B G:C WC [cWW][XIX] 10.68 55.19; 48.92 6.27 -8.52 0.55 19.82
Riboswitch 3OXE 39!B:64!B C:A rH_1 [rWH][XXV] 11.19 23.89; 11.34 12.55 -109.69 0.28 15.97
Riboswitch 3OXE 40!B:62!B A:G S(bp:N1-O2P)_1 [---][-] 8.83 22.12; 82.35 60.23 140.28 1.71 19.6
Riboswitch 3OXE 41!B:62!B A:G S [tSH][XI] 9.5 5.86; 104.31 98.45 -33.55 0.41 13.07
Riboswitch 3OXE 42!B:61!B G:U Wb [cWW][XXVIII] 10.47 38.2; 68.16 29.96 1.61 0.08 10.18
Riboswitch 3OXE 43!B:60!B C:G WC [cWW][XIX] 10.7 53.66; 52.32 1.33 -6.05 0.28 16.8
Riboswitch 3OXE 44!B:59!B U:A WC [cWW][XX] 10.91 52.68; 49.86 2.82 -2.49 0.0 9.64
Riboswitch 3OXE 45!B:58!B C:G WC [cWW][XIX] 10.9 58.29; 57.57 0.72 -11.22 0.09 13.87
Riboswitch 3OXE 46!B:57!B U:A WC [cWW][XX] 10.6 54.34; 56.9 2.55 -8.21 0.17 10.89
Riboswitch 3OXE 47!B:56!B G:C WC [cWW][XIX] 10.76 57.44; 55.89 1.55 -5.98 0.16 11.29
Riboswitch 3OXE 48!B:55!B C:G WC [cWW][XIX] 10.65 54.37; 55.63 1.25 -5.48 0.06 8.44
Riboswitch 3OXE 49!B:54!B G:C WC [cWW][XIX] 10.68 54.41; 52.03 2.38 4.92 0.36 2.54
Riboswitch 3OXE 69!B:71!B U:A pS [cSH][-] 8.76 117.16; 21.15 96.01 47.74 1.86 13.42