Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3OXJ BPC Identified: 90 Ambiguities: 1
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3OXJ 1!A:88!A G:C WC [cWW][XIX] 10.99 48.27; 55.12 6.85 7.4 0.67 6.65
Riboswitch 3OXJ 2!A:87!A G:U Wb [cWW][XXVIII] 10.79 37.22; 63.69 26.47 -5.0 0.35 13.21
Riboswitch 3OXJ 3!A:86!A C:G WC [cWW][XIX] 10.53 55.65; 52.74 2.92 -6.76 0.12 29.42
Riboswitch 3OXJ 4!A:85!A U:A WC [cWW][XX] 10.52 58.15; 57.41 0.74 -6.07 0.28 14.3
Riboswitch 3OXJ 5!A:41!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.55 99.49; 149.52 50.03 -62.13 1.05 45.04
Riboswitch 3OXJ 5!A:84!A C:G WC [cWW][XIX] 10.62 55.74; 53.37 2.37 -5.04 0.12 16.53
Riboswitch 3OXJ 6!A:40!B U:A rpS(sb:O2*-N3) [cSS][-] 5.7 142.31; 97.88 44.43 -79.95 0.41 35.54
Riboswitch 3OXJ 6!A:83!A U:A WC [cWW][XX] 9.97 62.4; 64.85 2.45 -8.58 0.24 20.52
Riboswitch 3OXJ 7!A:64!B G:A rS [tSS][-] 8.1 93.67; 48.9 44.77 179.49 0.0 42.77
Riboswitch 3OXJ 7!A:82!A G:C WC [cWW][XIX] 10.73 54.42; 54.69 0.27 1.38 0.17 8.63
Riboswitch 3OXJ 8!A:81!A G:A S [tSH][XI] 9.43 94.26; 7.08 87.18 -89.13 0.44 11.15
Riboswitch 3OXJ 8!A:33!A G:A fS(sb:O2*-N1)_1 [---][-] 9.51 102.88; 38.74 64.14 172.03 2.37 18.3
Riboswitch 3OXJ 9!A:80!A A:G S [tSH][XI] 9.42 14.31; 91.6 77.29 -107.26 0.3 24.53
Riboswitch 3OXJ 10!A:31!A G:C rpS [cSS][-] 5.51 96.37; 155.31 58.95 -40.81 1.19 47.06
Riboswitch 3OXJ 11!A:73!A A:G rS [tSS][-] 8.32 58.27; 82.58 24.31 153.73 0.93 39.69
Riboswitch 3OXJ 11!A:30!A A:C rpS(bs:O2-O2*) [cSS][-] 5.67 151.16; 104.19 46.97 -38.54 1.31 23.0
Riboswitch 3OXJ 12!A:28!A G:C WC [cWW][XIX] 10.83 56.24; 50.66 5.58 -0.82 0.12 4.98
Riboswitch 3OXJ 14!A:27!A A:U WC [cWW][XX] 10.44 53.36; 56.39 3.03 -10.55 0.38 21.45
Riboswitch 3OXJ 15!A:26!A C:G WC [cWW][XIX] 10.55 55.42; 48.35 7.08 -10.23 0.45 28.14
Riboswitch 3OXJ 16!A:25!A C:G WC [cWW][XIX] 10.58 59.29; 55.55 3.74 -5.34 0.11 10.84
Riboswitch 3OXJ 17!A:24!A G:C WC [cWW][XIX] 10.82 51.97; 55.35 3.38 -14.24 0.27 24.29
Riboswitch 3OXJ 29!A:74!A G:C WC [cWW][XIX] 10.72 55.28; 53.44 1.84 -6.06 0.19 15.32
Riboswitch 3OXJ 30!A:73!A C:G WC [cWW][XIX] 10.8 54.79; 51.66 3.13 -10.91 0.29 18.91
Riboswitch 3OXJ 31!A:72!A C:G WC [cWW][XIX] 10.85 50.55; 51.06 0.51 -4.59 0.47 13.71
Riboswitch 3OXJ 33!A:80!A A:G pfS(sb:O2*-N3) [---][-] 6.28 90.93; 138.82 47.89 -12.96 1.53 28.23
Riboswitch 3OXJ 34!A:71!A A:A S [tSH][-] 9.53 6.32; 86.82 80.5 62.83 0.46 5.68
Riboswitch 3OXJ 35!A:70!A G:C WC [cWW][XIX] 10.8 49.89; 52.55 2.65 2.97 0.05 4.25
Riboswitch 3OXJ 36!A:68!A G:C WC [cWW][XIX] 10.66 51.73; 52.79 1.06 -14.15 0.1 17.65
Riboswitch 3OXJ 37!A:67!A A:U WC [cWW][XX] 10.08 60.6; 57.97 2.62 -15.63 0.12 25.56
Riboswitch 3OXJ 38!A:66!A G:C WC [cWW][XIX] 10.75 52.76; 49.71 3.05 -1.73 0.58 18.72
Riboswitch 3OXJ 39!A:64!A C:A rH_1 [rWH][XXV] 10.78 29.2; 13.2 16.0 -98.24 0.98 25.74
Riboswitch 3OXJ 40!A:6!B A:U rpS(sb:O2*-N3) [cSS][-] 5.61 95.79; 139.9 44.11 -71.6 0.08 41.71
Riboswitch 3OXJ 40!A:62!A A:G S(sb:O2*-N6)_2 [---][-] 8.96 21.39; 87.44 66.06 126.42 2.22 13.38
Riboswitch 3OXJ 41!A:84!B A:G rS [tSS][-] 7.95 55.75; 91.97 36.22 175.49 0.2 33.96
Riboswitch 3OXJ 41!A:5!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.65 142.37; 101.69 40.67 -50.48 1.13 40.18
Riboswitch 3OXJ 42!A:61!A G:U Wb [cWW][XXVIII] 10.19 44.78; 71.53 26.75 -8.73 0.34 19.43
Riboswitch 3OXJ 43!A:60!A C:G WC [cWW][XIX] 10.5 49.8; 61.66 11.86 -9.88 0.69 24.01
Riboswitch 3OXJ 44!A:59!A U:A WC [cWW][XX] 10.75 49.18; 54.16 4.98 1.14 0.04 7.24
Riboswitch 3OXJ 45!A:58!A C:G WC [cWW][XIX] 10.96 51.58; 49.82 1.76 1.94 0.45 3.66
Riboswitch 3OXJ 46!A:57!A U:A WC [cWW][XX] 10.4 55.8; 56.44 0.64 -5.73 0.15 10.67
Riboswitch 3OXJ 47!A:56!A G:C WC [cWW][XIX] 10.8 54.3; 53.33 0.97 -5.23 0.05 18.36
Riboswitch 3OXJ 48!A:55!A C:G WC [cWW][XIX] 10.66 59.06; 50.36 8.7 -6.26 0.29 13.62
Riboswitch 3OXJ 49!A:54!A G:C WC [cWW][XIX] 10.63 56.44; 55.59 0.85 -2.49 0.25 7.2
Riboswitch 3OXJ 50!A:53!A G:A S [tSH][XI] 9.65 94.01; 12.1 81.91 -106.95 0.61 17.95
Riboswitch 3OXJ 50!A:52!A G:A S(sb:O2*-N7) [---][-] 7.64 85.28; 33.53 51.75 -165.53 2.2 32.9
Riboswitch 3OXJ 63!A:83!B A:A rpS(sb:O2*-N3) [cSS][-] 5.69 96.74; 133.42 36.69 -77.24 0.01 46.06
Riboswitch 3OXJ 64!A:7!B A:G rS [tSS][-] 8.09 52.24; 94.21 41.97 176.29 0.1 38.34
Riboswitch 3OXJ 69!A:70!A U:C pS [cSH][-] 7.06 138.49; 39.98 98.5 11.15 0.42 9.02
Riboswitch 3OXJ 83!A:63!B A:A rpS(sb:O2*-N3) [cSS][-] 5.68 134.67; 98.98 35.69 -85.43 0.25 50.86
Riboswitch 3OXJ 84!A:41!B G:A rS [tSS][-] 7.8 89.56; 62.93 26.63 173.61 0.24 40.34
Riboswitch 3OXJ 1!B:88!B G:C WC [cWW][XIX] 11.03 48.52; 49.48 0.96 0.69 0.49 5.26
Riboswitch 3OXJ 2!B:87!B G:U Wb [cWW][XXVIII] 10.44 42.42; 71.17 28.75 -6.2 0.09 9.56
Riboswitch 3OXJ 3!B:86!B C:G WC [cWW][XIX] 10.8 48.27; 57.65 9.37 -5.11 0.5 19.11
Riboswitch 3OXJ 4!B:85!B U:A WC [cWW][XX] 10.65 52.1; 55.52 3.41 -2.13 0.06 11.52
Riboswitch 3OXJ 5!B:84!B C:G WC [cWW][XIX] 10.58 56.35; 55.03 1.32 -3.37 0.11 11.62
Riboswitch 3OXJ 6!B:83!B U:A WC [cWW][XX] 9.96 60.6; 59.75 0.85 -5.08 0.29 11.33
Riboswitch 3OXJ 7!B:82!B G:C WC [cWW][XIX] 10.62 54.36; 54.15 0.21 -3.87 0.14 15.18
Riboswitch 3OXJ 8!B:81!B G:A S [tSH][XI] 9.36 94.97; 7.57 87.41 -99.4 0.05 13.27
Riboswitch 3OXJ 8!B:33!B G:A fS(sb:O2*-N1)_1 [---][-] 9.57 101.91; 40.44 61.47 165.81 1.68 21.25
Riboswitch 3OXJ 9!B:80!B A:G S [tSH][XI] 9.37 16.13; 91.01 74.89 -104.73 0.6 21.84
Riboswitch 3OXJ 10!B:31!B G:C rpS [cSS][-] 5.51 97.13; 154.71 57.58 -43.33 1.14 47.12
Riboswitch 3OXJ 11!B:73!B A:G rS [tSS][-] 8.32 57.98; 84.62 26.64 156.64 0.89 35.15
Riboswitch 3OXJ 11!B:30!B A:C rpS(bs:O2-O2*) [cSS][-] 5.56 153.83; 103.04 50.79 -38.46 1.79 15.43
Riboswitch 3OXJ 12!B:28!B G:C WC [cWW][XIX] 10.65 54.55; 58.07 3.52 -4.39 0.5 11.75
Riboswitch 3OXJ 14!B:27!B A:U WC [cWW][XX] 10.93 51.23; 48.74 2.49 -11.01 0.03 18.57
Riboswitch 3OXJ 15!B:26!B C:G WC [cWW][XIX] 10.7 55.62; 47.96 7.66 -15.29 0.53 25.66
Riboswitch 3OXJ 16!B:25!B C:G WC [cWW][XIX] 10.7 53.94; 50.59 3.36 -5.59 0.27 12.34
Riboswitch 3OXJ 17!B:24!B G:C WC [cWW][XIX] 10.68 55.35; 51.36 3.99 -5.89 0.33 13.83
Riboswitch 3OXJ 29!B:74!B G:C WC [cWW][XIX] 10.83 54.57; 52.23 2.34 -5.55 0.07 9.92
Riboswitch 3OXJ 30!B:73!B C:G WC [cWW][XIX] 10.84 54.34; 54.62 0.28 -13.97 0.27 22.66
Riboswitch 3OXJ 31!B:72!B C:G WC [cWW][XIX] 10.68 51.91; 54.21 2.31 -7.51 0.33 15.35
Riboswitch 3OXJ 33!B:80!B A:G pfS(sb:O2*-N3) [---][-] 6.21 91.53; 141.26 49.72 -4.62 2.06 19.01
Riboswitch 3OXJ 34!B:71!B A:A S [tSH][-] 9.77 5.87; 84.43 78.56 81.43 0.12 8.14
Riboswitch 3OXJ 35!B:70!B G:C WC [cWW][XIX] 10.73 49.75; 53.72 3.97 7.43 0.06 7.23
Riboswitch 3OXJ 36!B:68!B G:C WC [cWW][XIX] 10.78 51.52; 53.3 1.77 -10.73 0.36 18.31
Riboswitch 3OXJ 37!B:67!B A:U WC [cWW][XX] 9.84 63.13; 62.02 1.11 -17.57 0.08 27.29
Riboswitch 3OXJ 38!B:66!B G:C WC [cWW][XIX] 10.84 53.61; 47.95 5.66 -3.72 0.69 16.75
Riboswitch 3OXJ 39!B:64!B C:A rH_1 [rWH][XXV] 11.12 23.41; 12.31 11.1 -112.06 0.79 19.0
Riboswitch 3OXJ 40!B:62!B* A:G S [tSH][XI]; S(bp:N1-O2P)_1 [---][-] 9.14 17.8; 76.93 59.13 128.43 1.69 19.0
Riboswitch 3OXJ 41!B:62!B A:G S [tSH][XI] 9.53 6.86; 99.92 93.06 -25.44 0.44 12.87
Riboswitch 3OXJ 42!B:61!B G:U Wb [cWW][XXVIII] 10.51 46.07; 65.26 19.19 -3.59 0.31 11.45
Riboswitch 3OXJ 43!B:60!B C:G WC [cWW][XIX] 10.55 54.24; 49.93 4.31 -11.21 0.49 24.9
Riboswitch 3OXJ 44!B:59!B U:A WC [cWW][XX] 10.42 57.76; 51.24 6.52 -4.79 0.17 9.12
Riboswitch 3OXJ 45!B:58!B C:G WC [cWW][XIX] 10.79 59.61; 52.29 7.33 -11.88 0.04 15.13
Riboswitch 3OXJ 46!B:57!B U:A WC [cWW][XX] 10.64 51.1; 54.65 3.55 -8.5 0.32 8.97
Riboswitch 3OXJ 47!B:56!B G:C WC [cWW][XIX] 10.22 53.11; 66.06 12.95 -13.28 0.33 21.18
Riboswitch 3OXJ 48!B:55!B C:G WC [cWW][XIX] 10.88 48.93; 54.89 5.96 -4.18 0.07 7.54
Riboswitch 3OXJ 49!B:54!B G:C WC [cWW][XIX] 10.75 56.44; 51.19 5.26 3.22 0.58 6.41
Riboswitch 3OXJ 69!B:71!B U:A pS [cSH][-] 8.76 114.93; 22.13 92.79 43.33 1.98 10.27
Riboswitch 3OXJ 69!B:70!B U:C pS [cSH][-] 7.05 138.69; 38.39 100.3 8.69 0.9 7.19