Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3OXM BPC Identified: 93 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
Riboswitch 3OXM 1!A:88!A G:C WC_Mo [cWW][XIX] 11.28 53.66; 55.5 1.84 3.29 0.22 5.41
Riboswitch 3OXM 2!A:87!A G:U Wb [cWW][XXVIII] 10.69 44.51; 61.55 17.04 -9.67 0.16 15.59
Riboswitch 3OXM 3!A:86!A C:G WC [cWW][XIX] 10.71 54.21; 57.45 3.24 -10.27 0.35 27.5
Riboswitch 3OXM 4!A:85!A U:A WC [cWW][XX] 10.34 56.1; 54.45 1.65 -5.99 0.34 15.85
Riboswitch 3OXM 5!A:41!B C:A rpS(ss:O2*-O2*)_1 [cSS][-] 6.17 100.58; 151.72 51.14 -59.05 0.63 37.33
Riboswitch 3OXM 5!A:84!A C:G WC [cWW][XIX] 10.56 56.26; 55.36 0.9 -2.23 0.05 15.69
Riboswitch 3OXM 6!A:40!B U:A rpS(sb:O2*-N3) [cSS][-] 5.62 141.08; 95.96 45.12 -76.03 0.5 35.11
Riboswitch 3OXM 6!A:83!A U:A WC [cWW][XX] 9.95 62.19; 62.82 0.63 -6.31 0.01 15.41
Riboswitch 3OXM 7!A:64!B G:A rS [tSS][-] 8.01 93.95; 50.22 43.73 176.61 0.36 38.99
Riboswitch 3OXM 7!A:82!A G:C WC [cWW][XIX] 10.71 53.72; 52.67 1.05 -4.06 0.02 9.05
Riboswitch 3OXM 8!A:81!A G:A S [tSH][XI] 9.33 94.33; 7.12 87.21 -97.41 0.26 11.97
Riboswitch 3OXM 8!A:33!A G:A fS(sb:O2*-N1)_1 [---][-] 9.48 103.68; 38.35 65.33 169.91 2.6 18.18
Riboswitch 3OXM 9!A:80!A A:G S [tSH][XI] 9.47 17.03; 92.93 75.9 -100.27 0.4 23.45
Riboswitch 3OXM 10!A:31!A G:C rpS [cSS][-] 5.59 94.51; 157.43 62.92 -46.43 0.69 44.2
Riboswitch 3OXM 11!A:73!A A:G rS [tSS][-] 8.23 57.11; 88.05 30.94 156.51 0.74 31.83
Riboswitch 3OXM 11!A:30!A A:C rpS(bs:O2-O2*) [cSS][-] 5.68 150.48; 99.85 50.63 -36.78 1.45 14.77
Riboswitch 3OXM 12!A:28!A G:C WC [cWW][XIX] 10.71 56.17; 51.63 4.54 -6.54 0.01 11.43
Riboswitch 3OXM 14!A:27!A A:U WC [cWW][XX] 10.69 52.04; 55.69 3.64 -10.58 0.24 19.53
Riboswitch 3OXM 15!A:26!A C:G WC [cWW][XIX] 10.57 54.0; 55.54 1.53 -8.14 0.15 23.98
Riboswitch 3OXM 16!A:25!A C:G WC [cWW][XIX] 10.54 56.71; 52.69 4.02 -8.85 0.07 16.96
Riboswitch 3OXM 17!A:24!A G:C WC [cWW][XIX] 10.73 56.82; 51.39 5.43 -6.66 0.24 17.61
Riboswitch 3OXM 29!A:74!A G:C WC [cWW][XIX] 10.69 54.65; 54.38 0.28 -5.29 0.13 10.92
Riboswitch 3OXM 30!A:73!A C:G WC [cWW][XIX] 10.7 50.5; 56.55 6.05 -10.7 0.19 18.43
Riboswitch 3OXM 31!A:72!A C:G WC [cWW][XIX] 10.8 52.63; 51.14 1.49 -3.14 0.29 8.18
Riboswitch 3OXM 33!A:80!A A:G pfS(sb:O2*-N3) [---][-] 6.28 90.21; 142.14 51.93 -7.9 1.23 24.51
Riboswitch 3OXM 34!A:71!A A:A S [tSH][-] 9.57 4.47; 86.25 81.78 72.7 0.09 8.17
Riboswitch 3OXM 35!A:70!A G:C WC [cWW][XIX] 10.63 48.7; 55.56 6.87 7.84 0.1 7.91
Riboswitch 3OXM 36!A:68!A G:C WC [cWW][XIX] 10.64 50.64; 55.66 5.02 -4.8 0.37 15.07
Riboswitch 3OXM 37!A:67!A A:U WC [cWW][XX] 10.11 56.53; 62.54 6.02 -15.32 0.22 23.48
Riboswitch 3OXM 38!A:66!A G:C WC [cWW][XIX] 10.78 52.95; 51.4 1.55 -6.93 0.36 13.71
Riboswitch 3OXM 39!A:64!A C:A rH_1 [rWH][XXV] 11.13 25.79; 11.32 14.48 -102.19 0.68 17.98
Riboswitch 3OXM 40!A:6!B A:U rpS(sb:O2*-N3) [cSS][-] 5.7 92.26; 139.65 47.39 -73.42 0.0 42.61
Riboswitch 3OXM 40!A:62!A A:G S(bp:N1-O2P)_1 [---][-] 8.96 23.06; 75.1 52.04 135.78 2.4 10.05
Riboswitch 3OXM 41!A:84!B A:G rS [tSS][-] 8.1 55.59; 91.76 36.17 173.47 0.29 28.89
Riboswitch 3OXM 41!A:5!B A:C rpS(ss:O2*-O2*)_1 [cSS][-] 6.72 141.58; 100.88 40.69 -50.5 0.77 37.64
Riboswitch 3OXM 41!A:62!A A:G S [tSH][XI] 9.47 3.43; 96.01 92.58 -14.15 0.18 15.84
Riboswitch 3OXM 42!A:85!B G:A rS(ss:O2*-O2*)_1 [---][-] 4.95 113.24; 147.97 34.73 -130.26 1.6 55.44
Riboswitch 3OXM 42!A:61!A G:U Wb [cWW][XXVIII] 10.88 36.41; 64.21 27.8 -1.72 0.69 20.38
Riboswitch 3OXM 43!A:60!A C:G WC [cWW][XIX] 10.65 51.9; 50.85 1.05 -7.86 0.71 20.78
Riboswitch 3OXM 44!A:59!A U:A WC [cWW][XX] 10.91 45.31; 49.66 4.35 -3.69 0.28 11.19
Riboswitch 3OXM 45!A:58!A C:G WC [cWW][XIX] 11.14 48.23; 41.51 6.72 -9.57 0.26 14.87
Riboswitch 3OXM 46!A:57!A U:A WC [cWW][XX] 10.46 56.68; 53.88 2.8 -10.43 0.14 12.34
Riboswitch 3OXM 47!A:56!A G:C WC [cWW][XIX] 10.6 53.17; 55.79 2.62 -5.74 0.02 15.4
Riboswitch 3OXM 48!A:55!A C:G WC [cWW][XIX] 10.56 55.73; 56.39 0.66 -5.69 0.25 13.9
Riboswitch 3OXM 49!A:54!A G:C WC [cWW][XIX] 10.61 53.99; 56.27 2.29 -3.89 0.06 6.1
Riboswitch 3OXM 50!A:53!A G:A S [tSH][XI] 9.5 94.08; 16.78 77.3 -101.81 0.89 19.5
Riboswitch 3OXM 50!A:52!A G:A S(sb:O2*-N7) [---][-] 7.58 86.31; 35.91 50.41 -164.75 2.31 34.68
Riboswitch 3OXM 63!A:83!B A:A rpS(sb:O2*-N3) [cSS][-] 5.73 99.16; 132.0 32.84 -77.16 0.05 46.74
Riboswitch 3OXM 64!A:7!B A:G rS [tSS][-] 8.13 51.36; 93.4 42.04 177.09 0.19 38.2
Riboswitch 3OXM 69!A:71!A U:A pS [cSH][-] 8.62 116.49; 22.11 94.37 46.24 2.22 13.93
Riboswitch 3OXM 69!A:70!A U:C pS [cSH][-] 6.97 140.59; 37.4 103.19 11.52 1.02 7.95
Riboswitch 3OXM 83!A:63!B A:A rpS(sb:O2*-N3) [cSS][-] 5.65 136.43; 100.11 36.32 -77.97 0.49 47.27
Riboswitch 3OXM 84!A:41!B G:A rS [tSS][-] 7.78 89.13; 61.64 27.49 175.54 0.13 34.24
Riboswitch 3OXM 1!B:88!B G:C WC [cWW][XIX] 10.86 48.84; 50.64 1.8 3.71 0.48 8.6
Riboswitch 3OXM 2!B:87!B G:U Wb [cWW][XXVIII] 10.57 39.52; 64.03 24.51 -9.69 0.02 14.75
Riboswitch 3OXM 3!B:86!B C:G WC [cWW][XIX] 10.66 50.86; 54.79 3.93 -10.64 0.44 24.76
Riboswitch 3OXM 4!B:85!B U:A WC [cWW][XX] 10.56 53.48; 54.74 1.26 -6.64 0.24 10.39
Riboswitch 3OXM 5!B:84!B C:G WC [cWW][XIX] 10.69 55.14; 54.43 0.71 -6.29 0.08 14.87
Riboswitch 3OXM 6!B:83!B U:A WC [cWW][XX] 9.99 59.62; 59.46 0.15 -8.63 0.02 12.57
Riboswitch 3OXM 7!B:82!B G:C WC [cWW][XIX] 10.62 52.86; 54.57 1.71 -3.66 0.15 11.27
Riboswitch 3OXM 8!B:81!B G:A S [tSH][XI] 9.37 91.24; 9.26 81.98 -111.86 0.22 11.78
Riboswitch 3OXM 9!B:80!B A:G S [tSH][XI] 9.33 16.6; 92.14 75.55 -96.19 0.25 25.25
Riboswitch 3OXM 10!B:31!B G:C rpS [cSS][-] 5.44 95.48; 156.74 61.26 -47.2 0.5 41.37
Riboswitch 3OXM 11!B:73!B A:G rS [tSS][-] 8.35 57.66; 85.47 27.81 153.42 1.1 38.31
Riboswitch 3OXM 11!B:30!B A:C rpS(bs:O2-O2*) [cSS][-] 5.48 150.75; 103.89 46.86 -36.29 1.76 17.43
Riboswitch 3OXM 12!B:28!B G:C WC [cWW][XIX] 10.49 54.41; 57.67 3.26 -3.29 0.42 10.0
Riboswitch 3OXM 14!B:27!B A:U WC [cWW][XX] 10.82 51.62; 49.2 2.42 -10.38 0.18 17.27
Riboswitch 3OXM 15!B:26!B C:G WC [cWW][XIX] 10.49 57.11; 53.17 3.94 -14.92 0.57 25.88
Riboswitch 3OXM 16!B:25!B C:G WC [cWW][XIX] 10.66 55.09; 52.81 2.28 -7.71 0.08 13.71
Riboswitch 3OXM 17!B:24!B G:C WC [cWW][XIX] 10.64 57.36; 52.47 4.9 -7.9 0.32 18.71
Riboswitch 3OXM 18!B:24!B U:C Wb* [---][-] 8.73 41.31; 77.83 36.53 -21.26 2.71 8.91
Riboswitch 3OXM 29!B:74!B G:C WC [cWW][XIX] 10.72 51.47; 55.06 3.58 -7.55 0.09 12.37
Riboswitch 3OXM 30!B:73!B C:G WC [cWW][XIX] 10.64 53.07; 55.21 2.14 -14.63 0.22 23.72
Riboswitch 3OXM 31!B:72!B C:G WC [cWW][XIX] 10.66 53.54; 51.52 2.02 -6.36 0.23 10.84
Riboswitch 3OXM 33!B:80!B A:G pfS(sb:O2*-N3) [---][-] 6.19 92.25; 141.85 49.61 -7.12 2.07 21.75
Riboswitch 3OXM 34!B:71!B A:A S [tSH][-] 9.66 4.33; 84.75 80.41 42.82 0.15 3.95
Riboswitch 3OXM 35!B:70!B G:C WC [cWW][XIX] 10.75 48.83; 52.36 3.54 6.93 0.01 6.8
Riboswitch 3OXM 36!B:68!B G:C WC [cWW][XIX] 10.64 53.0; 54.1 1.1 -10.02 0.38 17.48
Riboswitch 3OXM 37!B:67!B A:U WC [cWW][XX] 10.04 61.39; 62.65 1.26 -16.92 0.14 24.67
Riboswitch 3OXM 38!B:66!B G:C WC [cWW][XIX] 10.67 54.78; 50.72 4.06 -8.15 0.54 17.88
Riboswitch 3OXM 39!B:64!B C:A rH_1 [rWH][XXV] 11.02 25.41; 11.66 13.75 -112.04 0.18 15.6
Riboswitch 3OXM 40!B:62!B A:G S(bp:N1-O2P)_1 [---][-] 8.96 20.55; 81.45 60.91 138.86 1.41 17.54
Riboswitch 3OXM 41!B:62!B A:G S [tSH][XI] 9.53 7.12; 103.23 96.11 -29.01 0.05 12.71
Riboswitch 3OXM 42!B:61!B G:U Wb [cWW][XXVIII] 10.42 42.42; 68.04 25.61 0.64 0.26 9.83
Riboswitch 3OXM 43!B:60!B C:G WC [cWW][XIX] 10.65 55.81; 52.92 2.89 -7.04 0.38 20.19
Riboswitch 3OXM 44!B:59!B U:A WC [cWW][XX] 10.67 54.98; 48.75 6.23 -5.54 0.21 11.82
Riboswitch 3OXM 45!B:58!B C:G WC [cWW][XIX] 10.88 54.75; 57.44 2.69 -12.64 0.13 15.85
Riboswitch 3OXM 46!B:57!B U:A WC [cWW][XX] 10.69 57.25; 55.75 1.51 -8.93 0.07 11.61
Riboswitch 3OXM 47!B:56!B G:C WC [cWW][XIX] 10.75 53.74; 55.23 1.5 -4.55 0.2 8.25
Riboswitch 3OXM 48!B:55!B C:G WC [cWW][XIX] 10.72 50.5; 57.06 6.57 -4.75 0.15 9.37
Riboswitch 3OXM 49!B:54!B G:C WC [cWW][XIX] 10.73 52.33; 52.53 0.2 2.63 0.38 3.9
Riboswitch 3OXM 69!B:71!B U:A pS [cSH][-] 8.7 115.08; 23.26 91.82 46.96 2.03 10.15
Riboswitch 3OXM 69!B:70!B U:C pS [cSH][-] 6.96 139.59; 39.55 100.04 8.09 0.65 8.1