Identified Basepairs and Their Conformations and Conformational Parameters
RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3P4A
BPC Identified: 24
Ambiguities: 0
dsRNA |
3P4A |
101!A:216!B |
C:G |
WC [cWW][XIX] |
10.62 |
55.53; 55.19 |
0.35 |
-0.59 |
0.01 |
4.61 |
dsRNA |
3P4A |
102!A:215!B |
G:C |
WC [cWW][XIX] |
10.69 |
52.31; 55.5 |
3.19 |
-1.77 |
0.08 |
4.61 |
dsRNA |
3P4A |
103!A:214!B |
A:U |
WC [cWW][XX] |
10.45 |
57.26; 58.6 |
1.35 |
-5.11 |
0.11 |
8.0 |
dsRNA |
3P4A |
104!A:213!B |
A:U |
WC [cWW][XX] |
10.11 |
60.16; 62.77 |
2.61 |
-8.69 |
0.25 |
13.76 |
dsRNA |
3P4A |
105!A:212!B |
U:A |
WC [cWW][XX] |
10.38 |
58.37; 57.67 |
0.7 |
-8.87 |
0.23 |
12.95 |
dsRNA |
3P4A |
106!A:211!B |
U:A |
WC [cWW][XX] |
10.43 |
57.18; 57.77 |
0.59 |
-9.77 |
0.06 |
13.51 |
dsRNA |
3P4A |
107!A:210!B |
C:G |
WC [cWW][XIX] |
10.57 |
56.64; 54.44 |
2.2 |
-7.96 |
0.07 |
12.2 |
dsRNA |
3P4A |
108!A:209!B |
G:C |
WC [cWW][XIX] |
10.69 |
55.75; 55.63 |
0.11 |
-8.92 |
0.07 |
11.08 |
dsRNA |
3P4A |
301!C:416!D |
C:G |
WC [cWW][XIX] |
10.7 |
55.47; 55.17 |
0.3 |
-8.34 |
0.12 |
10.77 |
dsRNA |
3P4A |
302!C:415!D |
G:C |
WC [cWW][XIX] |
10.58 |
53.16; 57.07 |
3.91 |
-8.58 |
0.09 |
11.43 |
dsRNA |
3P4A |
303!C:414!D |
A:U |
WC [cWW][XX] |
10.38 |
56.68; 57.12 |
0.44 |
-9.23 |
0.06 |
13.77 |
dsRNA |
3P4A |
304!C:413!D |
A:U |
WC [cWW][XX] |
10.43 |
58.78; 61.54 |
2.76 |
-5.73 |
0.36 |
6.26 |
dsRNA |
3P4A |
305!C:412!D |
U:A |
WC [cWW][XX] |
10.29 |
57.47; 56.61 |
0.86 |
-5.05 |
0.01 |
8.72 |
dsRNA |
3P4A |
306!C:411!D |
U:A |
WC [cWW][XX] |
10.53 |
59.01; 59.45 |
0.44 |
-10.8 |
0.26 |
14.81 |
dsRNA |
3P4A |
307!C:410!D |
C:G |
WC [cWW][XIX] |
10.57 |
56.3; 54.25 |
2.06 |
-13.15 |
0.11 |
17.66 |
dsRNA |
3P4A |
308!C:409!D |
G:C |
WC [cWW][XIX] |
10.64 |
55.27; 55.11 |
0.16 |
-3.93 |
0.35 |
11.37 |
dsRNA |
3P4A |
501!E:616!F |
C:G |
WC [cWW][XIX] |
10.68 |
55.54; 55.06 |
0.48 |
-8.91 |
0.14 |
11.27 |
dsRNA |
3P4A |
502!E:615!F |
G:C |
WC [cWW][XIX] |
10.55 |
54.37; 56.51 |
2.14 |
-8.47 |
0.07 |
12.33 |
dsRNA |
3P4A |
503!E:614!F |
A:U |
WC [cWW][XX] |
10.44 |
56.56; 56.79 |
0.23 |
-10.13 |
0.0 |
13.28 |
dsRNA |
3P4A |
504!E:613!F |
A:U |
WC [cWW][XX] |
10.34 |
58.1; 58.77 |
0.66 |
-9.41 |
0.26 |
12.97 |
dsRNA |
3P4A |
505!E:612!F |
U:A |
WC [cWW][XX] |
10.12 |
62.26; 60.72 |
1.54 |
-8.56 |
0.2 |
14.05 |
dsRNA |
3P4A |
506!E:611!F |
U:A |
WC [cWW][XX] |
10.4 |
59.24; 56.6 |
2.64 |
-5.07 |
0.12 |
9.77 |
dsRNA |
3P4A |
507!E:610!F |
C:G |
WC [cWW][XIX] |
10.7 |
54.99; 52.44 |
2.55 |
-1.55 |
0.11 |
4.19 |
dsRNA |
3P4A |
508!E:609!F |
G:C |
WC [cWW][XIX] |
10.57 |
56.18; 56.73 |
0.55 |
-0.8 |
0.0 |
5.03 |