Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 3P4B
BPC Identified: 24
Ambiguities: 0
| dsRNA |
3P4B |
101!A:208!B |
C:G |
WC [cWW][XIX] |
10.72 |
54.83; 56.01 |
1.17 |
-6.15 |
0.33 |
10.46 |
| dsRNA |
3P4B |
102!A:207!B |
G:C |
WC [cWW][XIX] |
10.63 |
53.36; 56.85 |
3.49 |
-10.14 |
0.01 |
14.02 |
| dsRNA |
3P4B |
103!A:206!B |
A:U |
WC [cWW][XX] |
10.54 |
55.46; 56.57 |
1.11 |
-11.36 |
0.07 |
12.68 |
| dsRNA |
3P4B |
104!A:205!B |
A:U |
WC [cWW][XX] |
10.44 |
55.24; 57.39 |
2.15 |
-10.47 |
0.36 |
15.58 |
| dsRNA |
3P4B |
105!A:204!B |
U:A |
WC [cWW][XX] |
10.3 |
59.47; 59.13 |
0.35 |
-9.09 |
0.12 |
14.23 |
| dsRNA |
3P4B |
106!A:203!B |
U:A |
WC [cWW][XX] |
10.4 |
56.07; 57.18 |
1.1 |
-4.36 |
0.01 |
8.08 |
| dsRNA |
3P4B |
107!A:202!B |
C:G |
WC [cWW][XIX] |
10.66 |
55.06; 52.5 |
2.56 |
-2.09 |
0.08 |
7.33 |
| dsRNA |
3P4B |
108!A:201!B |
G:C |
WC [cWW][XIX] |
10.59 |
55.9; 55.63 |
0.27 |
-1.86 |
0.03 |
6.56 |
| dsRNA |
3P4B |
301!C:408!D |
C:G |
WC [cWW][XIX] |
10.64 |
54.0; 56.51 |
2.51 |
-1.75 |
0.05 |
6.44 |
| dsRNA |
3P4B |
302!C:407!D |
G:C |
WC [cWW][XIX] |
10.69 |
51.78; 54.83 |
3.05 |
-1.97 |
0.05 |
6.65 |
| dsRNA |
3P4B |
303!C:406!D |
A:U |
WC [cWW][XX] |
10.41 |
57.73; 56.12 |
1.61 |
-4.51 |
0.0 |
7.74 |
| dsRNA |
3P4B |
304!C:405!D |
A:U |
WC [cWW][XX] |
10.3 |
58.99; 59.62 |
0.64 |
-9.23 |
0.22 |
15.12 |
| dsRNA |
3P4B |
305!C:404!D |
U:A |
WC [cWW][XX] |
10.45 |
57.25; 55.48 |
1.77 |
-9.27 |
0.28 |
14.73 |
| dsRNA |
3P4B |
306!C:403!D |
U:A |
WC [cWW][XX] |
10.52 |
56.45; 55.14 |
1.31 |
-11.44 |
0.08 |
12.52 |
| dsRNA |
3P4B |
307!C:402!D |
C:G |
WC [cWW][XIX] |
10.63 |
57.61; 53.51 |
4.1 |
-10.34 |
0.02 |
13.25 |
| dsRNA |
3P4B |
308!C:401!D |
G:C |
WC [cWW][XIX] |
10.75 |
55.5; 53.83 |
1.67 |
-6.23 |
0.21 |
10.13 |
| dsRNA |
3P4B |
501!E:608!F |
C:G |
WC [cWW][XIX] |
10.82 |
53.79; 55.18 |
1.39 |
-8.85 |
0.33 |
11.84 |
| dsRNA |
3P4B |
502!E:607!F |
G:C |
WC [cWW][XIX] |
10.49 |
52.93; 56.67 |
3.74 |
-9.96 |
0.06 |
14.03 |
| dsRNA |
3P4B |
503!E:606!F |
A:U |
WC [cWW][XX] |
10.27 |
60.78; 61.99 |
1.2 |
-18.28 |
0.01 |
13.84 |
| dsRNA |
3P4B |
504!E:605!F |
A:U |
WC [cWW][XX] |
10.3 |
57.75; 58.76 |
1.01 |
-9.6 |
0.09 |
10.3 |
| dsRNA |
3P4B |
505!E:604!F |
U:A |
WC [cWW][XX] |
10.33 |
57.97; 56.54 |
1.43 |
-9.55 |
0.06 |
11.7 |
| dsRNA |
3P4B |
506!E:603!F |
U:A |
WC [cWW][XX] |
10.4 |
57.65; 60.36 |
2.71 |
-18.69 |
0.0 |
15.27 |
| dsRNA |
3P4B |
507!E:602!F |
C:G |
WC [cWW][XIX] |
10.56 |
56.88; 53.11 |
3.77 |
-10.33 |
0.1 |
13.85 |
| dsRNA |
3P4B |
508!E:601!F |
G:C |
WC [cWW][XIX] |
10.78 |
54.26; 54.83 |
0.57 |
-9.21 |
0.39 |
11.69 |