Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 3TRA BPC Identified: 31 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
tRNA 3TRA 1!A:71!A U:A WC [cWW][XX] 10.61 55.2; 53.3 1.89 3.28 0.77 28.41
tRNA 3TRA 2!A:70!A C:G WC [cWW][XIX] 10.79 54.27; 52.58 1.68 -3.11 0.01 4.66
tRNA 3TRA 3!A:69!A C:G WC [cWW][XIX] 10.81 50.21; 57.73 7.51 8.33 0.02 10.59
tRNA 3TRA 4!A:68!A G:C WC [cWW][XIX] 10.48 48.44; 58.31 9.87 -10.67 0.12 11.3
tRNA 3TRA 5!A:67!A U:G Wb [cWW][XXVIII] 10.42 70.18; 46.43 23.75 6.6 0.46 4.37
tRNA 3TRA 6!A:66!A G:C WC [cWW][XIX] 10.5 47.54; 56.57 9.03 -13.44 0.0 16.03
tRNA 3TRA 7!A:65!A A:U WC [cWW][XX] 10.65 54.69; 55.44 0.75 -5.53 0.22 3.9
tRNA 3TRA 8!A:14!A U:A rH_1 [tWH][XXIV] 9.6 30.48; 20.0 10.48 -175.89 0.21 10.47
tRNA 3TRA 9!A:23!A A:A rS* [tHH][-] 11.09 11.71; 8.28 3.43 161.91 0.14 10.05
tRNA 3TRA 10!A:45!A G:G pS_2 [---][-] 9.44 42.47; 105.88 63.41 -21.42 0.48 22.62
tRNA 3TRA 10!A:25!A G:U Wb [cWW][XXVIII] 10.59 42.4; 66.18 23.79 0.57 0.09 3.27
tRNA 3TRA 11!A:24!A U:A WC [cWW][XX] 10.48 55.31; 56.58 1.27 -13.07 0.22 14.52
tRNA 3TRA 12!A:23!A U:A WC [cWW][XX] 10.63 55.87; 53.04 2.83 -1.95 0.11 3.34
tRNA 3TRA 13!A:22!A U:G Wb_PSU [---][-] 10.55 82.61; 45.16 37.45 -9.44 0.22 7.31
tRNA 3TRA 14!A:21!A A:A pfS [cSW][-] 9.39 37.74; 114.98 77.24 -14.65 0.61 15.64
tRNA 3TRA 15!A:47!A A:U rWC [tWW][XXI] 11.13 27.3; 45.07 17.77 -178.41 0.27 4.17
tRNA 3TRA 17!A:54!A G:U fS_PSU [---][-] 9.36 43.28; 117.28 74.0 -129.32 0.28 32.28
tRNA 3TRA 22!A:46!A G:A rH*_1 [tHW][-] 11.91 17.9; 22.1 4.19 -169.75 0.17 9.8
tRNA 3TRA 26!A:44!A G:A WC [cWW][VIII] 12.63 45.63; 45.75 0.12 -11.13 0.11 27.17
tRNA 3TRA 27!A:43!A G:C WC [cWW][XIX] 10.8 53.18; 52.8 0.38 -12.08 0.07 14.02
tRNA 3TRA 28!A:42!A G:C WC [cWW][XIX] 10.72 51.13; 54.27 3.14 -9.91 0.28 15.08
tRNA 3TRA 29!A:41!A C:G WC [cWW][XIX] 10.58 58.1; 52.63 5.47 -10.79 0.22 9.63
tRNA 3TRA 30!A:40!A G:U Wb [cWW][XXVIII] 10.56 43.0; 68.11 25.11 -10.18 0.09 16.29
tRNA 3TRA 31!A:39!A C:G WC [cWW][XIX] 10.73 54.98; 52.55 2.43 -10.24 0.39 9.37
tRNA 3TRA 48!A:64!A C:G WC [cWW][XIX] 10.77 51.88; 55.67 3.79 -2.02 0.14 6.67
tRNA 3TRA 49!A:63!A G:C Wb [---][-] 10.26 48.33; 62.16 13.83 -3.32 0.39 11.34
tRNA 3TRA 50!A:62!A G:C WC [cWW][XIX] 10.49 46.67; 58.88 12.21 -0.84 0.18 9.93
tRNA 3TRA 51!A:61!A G:C WC [cWW][XIX] 10.62 60.56; 48.45 12.1 -3.69 0.06 11.28
tRNA 3TRA 52!A:60!A G:C WC [cWW][XIX] 10.8 53.65; 51.94 1.71 2.2 0.19 7.08
tRNA 3TRA 53!A:57!A U:A rH_1 [tWH][XXIV] 9.81 32.28; 16.5 15.78 -159.55 0.08 7.91
tRNA 3TRA 54!A:56!A U:A S_PSU(sb:O2*-N7) [---][-] 6.51 94.56; 42.62 51.94 -178.44 1.29 34.87