Identified Basepairs and Their Conformations and Conformational Parameters
| RNA |
PDB |
Position |
bp |
bpC; LG [LW][Sanger] |
dCC |
<X ; <Y |
|<X - <Y| |
Torsion |
Z-Diff |
Buckle |
PDB Id: 405D
BPC Identified: 16
Ambiguities: 0
| dsRNA |
405D |
1!A:32!B |
G:C |
WC [cWW][XIX] |
10.52 |
47.68; 58.63 |
10.96 |
-11.52 |
0.2 |
11.36 |
| dsRNA |
405D |
2!A:31!B |
C:G |
WC [cWW][XIX] |
10.53 |
53.79; 51.29 |
2.5 |
-9.86 |
0.1 |
14.49 |
| dsRNA |
405D |
3!A:30!B |
A:U |
WC [cWW][XX] |
10.39 |
55.2; 58.2 |
3.0 |
-7.17 |
0.02 |
11.26 |
| dsRNA |
405D |
4!A:29!B |
G:C |
WC [cWW][XIX] |
10.58 |
54.15; 56.61 |
2.47 |
1.77 |
0.24 |
0.74 |
| dsRNA |
405D |
5!A:28!B |
A:U |
WC [cWW][XX] |
10.38 |
57.17; 56.32 |
0.85 |
-2.99 |
0.03 |
13.85 |
| dsRNA |
405D |
6!A:27!B |
C:A |
Wb [cWW][-] |
10.3 |
71.46; 40.7 |
30.76 |
-6.6 |
0.03 |
12.86 |
| dsRNA |
405D |
7!A:26!B |
U:A |
WC [cWW][XX] |
10.35 |
56.42; 55.87 |
0.55 |
-1.16 |
0.51 |
10.73 |
| dsRNA |
405D |
8!A:25!B |
U:A |
WC [cWW][XX] |
10.26 |
54.56; 56.04 |
1.48 |
-3.16 |
0.43 |
9.85 |
| dsRNA |
405D |
9!A:24!B |
A:U |
WC [cWW][XX] |
10.35 |
58.88; 51.96 |
6.92 |
-5.67 |
0.55 |
14.73 |
| dsRNA |
405D |
10!A:23!B |
A:U |
WC [cWW][XX] |
10.5 |
51.54; 56.86 |
5.32 |
-3.08 |
0.12 |
6.83 |
| dsRNA |
405D |
11!A:22!B |
A:C |
Wb [cWW][-] |
10.24 |
43.96; 68.91 |
24.96 |
-6.51 |
0.02 |
11.23 |
| dsRNA |
405D |
12!A:21!B |
U:A |
WC [cWW][XX] |
10.33 |
54.84; 59.13 |
4.29 |
-4.35 |
0.03 |
11.79 |
| dsRNA |
405D |
13!A:20!B |
C:G |
WC [cWW][XIX] |
10.52 |
52.12; 55.26 |
3.14 |
-6.1 |
0.24 |
16.73 |
| dsRNA |
405D |
14!A:19!B |
U:A |
WC [cWW][XX] |
10.45 |
53.26; 58.09 |
4.84 |
1.4 |
0.25 |
8.7 |
| dsRNA |
405D |
15!A:18!B |
G:C |
WC [cWW][XIX] |
10.42 |
54.5; 54.53 |
0.03 |
-14.51 |
0.35 |
15.19 |
| dsRNA |
405D |
16!A:17!B |
C:G |
WC [cWW][XIX] |
10.55 |
57.51; 50.3 |
7.2 |
-12.93 |
0.06 |
15.26 |