Identified Basepairs and Their Conformations and Conformational Parameters

PDB Id: 406D BPC Identified: 66 Ambiguities: 0
RNA PDB Position bp bpC; LG [LW][Sanger] dCC <X ; <Y |<X - <Y| Torsion Z-Diff Buckle
dsRNA 406D 1!A:34!E C:G WC [cWW][XIX] 10.73 52.5; 54.11 1.61 -10.34 0.73 29.66
dsRNA 406D 2!A:33!E A:U WC [cWW][XX] 10.2 56.6; 59.09 2.48 -9.27 0.32 17.92
dsRNA 406D 3!A:32!E C:G WC [cWW][XIX] 10.38 57.86; 56.07 1.8 -5.88 0.34 21.64
dsRNA 406D 4!A:31!E C:G WC [cWW][XIX] 10.65 55.79; 53.98 1.81 -7.5 0.2 14.62
dsRNA 406D 5!A:30!E G:C WC [cWW][XIX] 10.72 56.03; 56.49 0.46 0.23 0.48 7.23
dsRNA 406D 6!A:29!E G:U Wb [cWW][XXVIII] 10.57 44.29; 67.01 22.72 -2.58 0.03 7.6
dsRNA 406D 7!A:28!E A:U WC [cWW][XX] 10.32 58.33; 57.89 0.44 -10.16 0.24 16.18
dsRNA 406D 8!A:27!E U:G Wb [cWW][XXVIII] 10.66 69.52; 41.73 27.79 -8.18 0.43 12.53
dsRNA 406D 9!A:26!E G:G H_1 [cWH][VI] 10.76 62.7; 45.86 16.83 5.48 0.38 16.44
dsRNA 406D 10!A:25!E G:U Wb [cWW][XXVIII] 10.6 42.1; 69.36 27.26 -7.38 0.04 8.38
dsRNA 406D 11!A:24!E U:A WC [cWW][XX] 10.19 58.29; 58.62 0.33 -8.83 0.12 11.15
dsRNA 406D 12!A:23!E U:G Wb [cWW][XXVIII] 10.52 69.12; 40.97 28.15 -1.99 0.04 8.16
dsRNA 406D 13!A:22!E C:G WC [cWW][XIX] 10.7 54.6; 54.54 0.06 -1.71 0.05 4.31
dsRNA 406D 14!A:21!E G:C WC [cWW][XIX] 10.71 54.24; 54.72 0.47 -3.77 0.21 11.77
dsRNA 406D 15!A:20!E G:C WC [cWW][XIX] 10.38 56.11; 57.81 1.7 -4.14 0.06 23.97
dsRNA 406D 16!A:19!E U:A WC [cWW][XX] 10.2 60.19; 58.16 2.03 -9.39 0.22 14.92
dsRNA 406D 17!A:18!E G:C WC [cWW][XIX] 10.92 52.07; 52.75 0.68 -11.03 0.23 11.5
dsRNA 406D 1!B:34!F C:G WC [cWW][XIX] 10.87 53.13; 51.5 1.63 -10.62 0.17 12.98
dsRNA 406D 2!B:33!F A:U WC [cWW][XX] 10.45 54.61; 57.04 2.43 -13.11 0.27 16.68
dsRNA 406D 3!B:32!F C:G WC [cWW][XIX] 10.64 53.17; 54.37 1.21 -15.59 0.07 19.48
dsRNA 406D 4!B:31!F C:G WC [cWW][XIX] 10.83 51.69; 53.6 1.91 -10.96 0.19 10.76
dsRNA 406D 5!B:30!F G:C WC [cWW][XIX] 11.01 51.65; 50.45 1.21 -4.91 0.21 15.96
dsRNA 406D 6!B:29!F G:U Wb [cWW][XXVIII] 10.35 39.45; 66.51 27.06 -11.06 0.45 10.55
dsRNA 406D 7!B:28!F A:U WC [cWW][XX] 10.78 54.05; 52.63 1.42 -15.15 0.08 24.17
dsRNA 406D 8!B:27!F U:G Wb [cWW][XXVIII] 10.62 76.0; 43.68 32.32 -7.76 0.32 13.47
dsRNA 406D 10!B:25!F G:U Wb [cWW][XXVIII] 10.54 42.63; 65.34 22.71 0.77 0.22 8.2
dsRNA 406D 11!B:24!F U:A WC [cWW][XX] 10.38 57.84; 56.88 0.96 -1.85 0.21 6.37
dsRNA 406D 12!B:23!F U:G Wb [cWW][XXVIII] 10.53 65.69; 40.32 25.37 -10.76 0.14 13.29
dsRNA 406D 13!B:22!F C:G WC [cWW][XIX] 10.51 55.6; 58.16 2.56 -6.98 0.17 14.31
dsRNA 406D 14!B:21!F G:C WC [cWW][XIX] 10.79 51.79; 51.45 0.34 -3.91 0.48 14.38
dsRNA 406D 15!B:20!F G:C WC [cWW][XIX] 10.72 52.26; 53.4 1.14 -8.67 0.26 13.33
dsRNA 406D 16!B:19!F U:A WC [cWW][XX] 9.93 60.67; 59.59 1.07 -19.25 0.22 21.52
dsRNA 406D 17!B:18!F G:C WC [cWW][XIX] 10.63 54.29; 54.18 0.11 -18.07 0.14 24.38
dsRNA 406D 1!C:34!G C:G WC [cWW][XIX] 10.89 49.68; 50.73 1.05 -19.66 0.24 22.15
dsRNA 406D 2!C:33!G A:U WC [cWW][XX] 10.48 56.47; 55.14 1.32 -13.32 0.17 23.64
dsRNA 406D 3!C:32!G C:G WC [cWW][XIX] 10.72 55.34; 53.38 1.96 -2.47 0.09 5.66
dsRNA 406D 4!C:31!G C:G WC [cWW][XIX] 10.67 53.84; 54.24 0.41 -6.2 0.14 16.48
dsRNA 406D 5!C:30!G G:C WC [cWW][XIX] 10.91 51.21; 51.85 0.64 -9.51 0.0 12.87
dsRNA 406D 6!C:29!G G:U Wb [cWW][XXVIII] 10.39 39.76; 68.49 28.74 -15.88 0.79 21.16
dsRNA 406D 7!C:28!G A:U WC [cWW][XX] 10.44 56.43; 55.81 0.62 -9.67 0.46 16.87
dsRNA 406D 8!C:27!G U:G Wb [cWW][XXVIII] 10.48 69.12; 41.59 27.53 0.77 0.19 3.79
dsRNA 406D 10!C:25!G G:U Wb [cWW][XXVIII] 10.44 42.39; 71.29 28.9 -11.74 0.52 15.48
dsRNA 406D 11!C:24!G U:A WC [cWW][XX] 10.25 57.69; 58.81 1.11 -12.03 0.29 13.49
dsRNA 406D 12!C:23!G U:G Wb [cWW][XXVIII] 10.69 70.87; 41.21 29.66 -5.31 0.05 12.67
dsRNA 406D 13!C:22!G C:G WC [cWW][XIX] 10.74 57.02; 54.72 2.3 0.22 0.16 3.49
dsRNA 406D 14!C:21!G G:C WC [cWW][XIX] 10.7 53.4; 54.33 0.93 -3.08 0.28 9.82
dsRNA 406D 15!C:20!G G:C WC [cWW][XIX] 10.49 56.17; 56.52 0.36 -8.92 0.31 17.22
dsRNA 406D 16!C:19!G U:A WC [cWW][XX] 10.04 60.94; 59.69 1.25 -10.42 0.03 14.81
dsRNA 406D 17!C:18!G G:C WC [cWW][XIX] 10.83 54.47; 53.87 0.6 -4.79 0.02 6.38
dsRNA 406D 1!D:34!H C:G WC [cWW][XIX] 11.01 49.0; 48.84 0.16 -2.22 0.28 9.83
dsRNA 406D 2!D:33!H A:U WC [cWW][XX] 10.32 57.73; 57.49 0.24 -8.78 0.28 10.6
dsRNA 406D 3!D:32!H C:G WC [cWW][XIX] 10.58 56.65; 55.25 1.4 -6.49 0.12 15.09
dsRNA 406D 4!D:31!H C:G WC [cWW][XIX] 10.73 55.43; 56.54 1.11 -0.33 0.04 5.78
dsRNA 406D 5!D:30!H G:C WC [cWW][XIX] 10.76 53.07; 54.31 1.24 -1.63 0.44 10.89
dsRNA 406D 6!D:29!H G:U Wb [cWW][XXVIII] 10.22 47.99; 64.86 16.86 -7.23 0.14 6.91
dsRNA 406D 7!D:28!H A:U WC [cWW][XX] 10.66 56.35; 53.92 2.43 -12.12 0.27 16.63
dsRNA 406D 8!D:27!H U:G Wb [cWW][XXVIII] 10.29 70.71; 34.84 35.87 -12.98 1.17 5.9
dsRNA 406D 9!D:26!H G:G H_2 [---][-] 9.68 59.04; 56.33 2.71 -1.34 0.85 26.78
dsRNA 406D 10!D:25!H G:U WC_mo [---][-] 11.35 42.49; 55.15 12.65 -5.96 0.56 11.87
dsRNA 406D 11!D:24!H U:A WC [cWW][XX] 10.26 58.19; 57.5 0.68 -7.67 0.2 10.4
dsRNA 406D 12!D:23!H U:G Wb [cWW][XXVIII] 10.19 68.35; 43.42 24.93 -9.02 0.07 17.29
dsRNA 406D 13!D:22!H C:G WC [cWW][XIX] 10.75 53.21; 57.17 3.96 -3.3 0.3 9.34
dsRNA 406D 14!D:21!H G:C WC [cWW][XIX] 10.79 54.66; 52.03 2.63 -6.9 0.49 8.5
dsRNA 406D 15!D:20!H G:C WC [cWW][XIX] 10.64 56.67; 54.34 2.33 -6.54 0.19 14.5
dsRNA 406D 16!D:19!H U:A WC [cWW][XX] 10.47 56.6; 56.02 0.57 -5.44 0.32 26.38
dsRNA 406D 17!D:18!H G:C WC [cWW][XIX] 10.81 49.73; 53.32 3.59 -18.09 0.23 23.22